Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00165 * 2 1 4 4 H 1.08987 * 110.89065 * 297.50975 * 3 2 1 5 5 C 1.55155 * 111.00344 * 173.58092 * 3 2 1 6 6 C 1.54318 * 102.94455 * 206.42751 * 5 3 2 7 7 N 1.47018 * 107.27074 * 22.19663 * 6 5 3 8 8 C 1.34779 * 125.65077 * 181.09637 * 7 6 5 9 9 O 1.21280 * 120.00509 * 179.97438 * 8 7 6 10 10 C 1.50703 * 119.99784 * 359.95693 * 8 7 6 11 11 S 1.80998 * 109.47180 * 180.02562 * 10 8 7 12 12 C 1.76203 * 100.00214 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99798 * 359.97438 * 12 11 10 14 14 C 1.38798 * 120.00149 * 180.02562 * 12 11 10 15 15 N 1.31625 * 120.00137 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99866 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47078 * 90.00331 * 16 14 12 18 18 H 1.48502 * 109.46753 * 210.00529 * 16 14 12 19 19 H 1.48500 * 109.47083 * 330.00323 * 16 14 12 20 20 C 1.47417 * 108.70510 * 1.05931 * 7 6 5 21 21 C 1.46900 * 110.99921 * 236.04825 * 2 1 3 22 22 H 1.08996 * 110.54025 * 177.54874 * 21 2 1 23 23 C 1.54629 * 110.48627 * 300.16445 * 21 2 1 24 24 C 1.54653 * 101.68615 * 93.66544 * 23 21 2 25 25 N 1.46766 * 105.38472 * 25.76799 * 24 23 21 26 26 C 1.46501 * 124.35296 * 162.85380 * 25 24 23 27 27 C 1.34429 * 111.29655 * 342.58729 * 25 24 23 28 28 O 1.21280 * 124.94186 * 180.69290 * 27 25 24 29 29 H 1.08992 * 109.47316 * 189.54853 * 1 2 3 30 30 H 1.09002 * 109.47108 * 309.55624 * 1 2 3 31 31 H 1.09004 * 109.46843 * 69.55089 * 1 2 3 32 32 H 1.09000 * 110.72477 * 324.79638 * 5 3 2 33 33 H 1.09007 * 110.71955 * 88.06487 * 5 3 2 34 34 H 1.08997 * 109.88521 * 262.77630 * 6 5 3 35 35 H 1.09004 * 110.01313 * 141.68286 * 6 5 3 36 36 H 1.09005 * 109.46996 * 299.99805 * 10 8 7 37 37 H 1.08999 * 109.47236 * 60.00285 * 10 8 7 38 38 H 0.96998 * 120.00312 * 179.97438 * 15 14 12 39 39 H 1.09003 * 110.37245 * 217.03430 * 20 7 6 40 40 H 1.08997 * 110.46081 * 94.75430 * 20 7 6 41 41 H 1.09005 * 110.96762 * 212.00069 * 23 21 2 42 42 H 1.08997 * 110.97219 * 335.72048 * 23 21 2 43 43 H 1.09001 * 110.39908 * 266.74291 * 24 23 21 44 44 H 1.08997 * 110.18226 * 144.68002 * 24 23 21 45 45 H 1.08999 * 109.46725 * 179.72346 * 26 25 24 46 46 H 1.08997 * 109.46976 * 299.72493 * 26 25 24 47 47 H 1.08998 * 109.46892 * 59.72728 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.6957 1.9028 -0.9031 5 6 3.5386 1.3747 0.1619 6 6 3.8153 2.7480 0.8092 7 7 2.5706 3.1826 1.4598 8 6 2.3935 4.3442 2.1201 9 8 1.3184 4.5999 2.6197 10 6 3.5315 5.3250 2.2378 11 16 2.9844 6.7744 3.1739 12 6 4.4670 7.7264 3.1580 13 1 5.3473 7.3466 2.6608 14 6 4.5038 8.9640 3.7854 15 7 5.6115 9.6750 3.7740 16 14 2.9814 9.6205 4.6460 17 1 2.9852 9.1793 6.0638 18 1 2.9820 11.1045 4.5893 19 1 1.7667 9.0998 3.9688 20 6 1.5480 2.1379 1.2697 21 6 1.9954 -0.7659 -1.1376 22 1 3.0845 -0.7250 -1.1550 23 6 1.5099 -2.2326 -1.0736 24 6 0.2400 -2.1809 -1.9548 25 7 0.4511 -1.0585 -2.8765 26 6 -0.3066 -0.8503 -4.1130 27 6 1.4252 -0.2427 -2.4375 28 8 1.7931 0.7661 -3.0012 29 1 -0.3633 -1.0133 0.1705 30 1 -0.3633 0.6545 0.7923 31 1 -0.3633 0.3591 -0.9630 32 1 3.8591 0.5667 0.8196 33 1 4.0284 1.3003 -0.8090 34 1 4.1040 3.4675 0.0431 35 1 4.6092 2.6577 1.5507 36 1 4.3663 4.8525 2.7555 37 1 3.8494 5.6340 1.2421 38 1 5.6371 10.5400 4.2121 39 1 0.5683 2.5897 1.1144 40 1 1.5239 1.4675 2.1288 41 1 2.2543 -2.9087 -1.4944 42 1 1.2614 -2.5171 -0.0512 43 1 -0.6422 -2.0031 -1.3398 44 1 0.1309 -3.1112 -2.5122 45 1 0.0445 0.0561 -4.6060 46 1 -0.1622 -1.7036 -4.7756 47 1 -1.3659 -0.7486 -3.8771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188974138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = -68.059036 kcal Electronic energy + Delta-G solvation = -27891.127975 eV Core-core repulsion = 24006.708321 eV Total energy + Delta-G solvation = -3884.419654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17685 -41.01945 -38.96129 -37.75088 -36.47411 -34.68910 -33.16840 -31.99668 -31.04511 -29.05108 -28.77083 -27.86333 -27.73981 -25.76051 -23.88408 -22.53578 -21.83402 -20.78805 -20.16510 -19.64837 -18.46049 -18.09701 -17.70905 -17.40830 -17.13755 -16.86074 -16.50487 -16.14084 -15.75322 -15.61887 -15.08012 -14.97833 -14.91034 -14.66927 -14.49824 -14.19290 -13.94308 -13.90223 -13.70075 -13.46929 -13.45068 -13.35476 -13.21854 -13.07815 -13.02211 -12.69382 -12.55608 -12.21204 -11.98480 -11.91955 -11.88341 -11.75020 -11.37524 -11.18350 -11.09087 -10.57177 -9.79925 -9.74016 -9.49683 -9.03254 -8.52768 -6.24516 0.92448 1.30285 1.34837 1.43909 1.45481 1.51608 1.95809 2.03292 2.24007 2.63747 2.73279 2.85110 3.21191 3.34413 3.49936 3.58642 3.72829 3.99254 4.01283 4.12019 4.14530 4.20565 4.26488 4.30867 4.37160 4.39183 4.41519 4.49165 4.56048 4.61814 4.73548 4.75300 4.79361 4.80232 4.90336 4.91620 5.05464 5.14554 5.17902 5.22187 5.48454 5.69591 5.77218 5.79908 6.03920 6.09968 6.27963 6.91910 6.98255 7.04535 8.59615 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028431 B = 0.002116 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.619344 B =13230.873787 C =13342.862653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.489 5.489 3 C 0.070 3.930 4 H 0.043 0.957 5 C -0.108 4.108 6 C 0.092 3.908 7 N -0.615 5.615 8 C 0.548 3.452 9 O -0.563 6.563 10 C -0.102 4.102 11 S -0.174 6.174 12 C -0.529 4.529 13 H 0.062 0.938 14 C 0.046 3.954 15 N -0.915 5.915 16 Si 0.915 3.085 17 H -0.260 1.260 18 H -0.258 1.258 19 H -0.239 1.239 20 C 0.121 3.879 21 C 0.051 3.949 22 H 0.124 0.876 23 C -0.115 4.115 24 C 0.089 3.911 25 N -0.621 5.621 26 C 0.087 3.913 27 C 0.474 3.526 28 O -0.580 6.580 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.014 0.986 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.278 0.722 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 -34.228 -13.547 38.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.213 5.213 3 C -0.039 4.039 4 H 0.061 0.939 5 C -0.145 4.145 6 C -0.030 4.030 7 N -0.350 5.350 8 C 0.336 3.664 9 O -0.442 6.442 10 C -0.253 4.253 11 S 0.053 5.947 12 C -0.676 4.676 13 H 0.081 0.919 14 C -0.160 4.160 15 N -0.553 5.553 16 Si 0.736 3.264 17 H -0.185 1.185 18 H -0.182 1.182 19 H -0.163 1.163 20 C -0.002 4.002 21 C -0.061 4.061 22 H 0.142 0.858 23 C -0.153 4.153 24 C -0.032 4.032 25 N -0.355 5.355 26 C -0.055 4.055 27 C 0.260 3.740 28 O -0.459 6.459 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.139 0.861 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.477 -33.341 -12.675 37.470 hybrid contribution 0.712 1.371 -1.263 1.995 sum -10.764 -31.970 -13.938 36.500 Atomic orbital electron populations 1.22786 0.86379 1.04771 1.00072 1.62452 1.08752 1.11588 1.38495 1.22705 0.96688 0.89011 0.95534 0.93934 1.22663 0.93283 0.96191 1.02410 1.22344 0.86248 0.96986 0.97432 1.48307 1.15158 1.17308 1.54237 1.19668 0.88385 0.80989 0.77319 1.90677 1.28374 1.76542 1.48561 1.23194 1.00231 0.96854 1.04979 1.84688 1.20096 1.17543 1.72411 1.22427 0.97349 1.06536 1.41304 0.91928 1.25563 0.99194 0.95722 0.95499 1.70009 1.28180 1.13510 1.43607 0.85864 0.80887 0.79208 0.80396 1.18469 1.18184 1.16287 1.22165 0.91094 0.88698 0.98217 1.22810 1.02280 0.96355 0.84679 0.85815 1.22803 0.97081 0.92314 1.03054 1.22619 0.99412 0.89383 0.91784 1.48500 1.36021 1.27039 1.23915 1.21671 0.96165 1.02556 0.85119 1.22522 0.80446 0.82985 0.88052 1.90714 1.64472 1.27097 1.63625 0.87210 0.91219 0.96749 0.87106 0.89009 0.91105 0.89082 0.86791 0.87439 0.91301 0.92508 0.89241 0.87222 0.86123 0.89553 0.87617 0.92623 0.89668 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 7.98 127.69 1.02 1.11 16 2 N -0.49 -6.73 4.65 -863.73 -4.02 -10.75 16 3 C 0.07 1.39 2.43 46.31 0.11 1.50 16 4 H 0.04 1.13 6.76 -2.39 -0.02 1.12 16 5 C -0.11 -1.74 5.39 31.78 0.17 -1.57 16 6 C 0.09 1.97 6.49 86.73 0.56 2.54 16 7 N -0.62 -17.94 3.33 -811.81 -2.70 -20.64 16 8 C 0.55 21.24 7.87 87.66 0.69 21.93 16 9 O -0.56 -26.16 16.12 -3.03 -0.05 -26.20 16 10 C -0.10 -4.17 5.35 71.24 0.38 -3.79 16 11 S -0.17 -9.17 18.55 -56.49 -1.05 -10.22 16 12 C -0.53 -31.58 10.04 67.95 0.68 -30.89 16 13 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 14 C 0.05 2.74 5.50 84.86 0.47 3.21 16 15 N -0.92 -56.53 13.97 21.65 0.30 -56.23 16 16 Si 0.91 45.93 27.74 68.60 1.90 47.84 16 17 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 20 C 0.12 2.97 5.31 86.86 0.46 3.43 16 21 C 0.05 0.58 3.01 44.91 0.14 0.71 16 22 H 0.12 1.33 7.00 -2.39 -0.02 1.31 16 23 C -0.11 -0.34 6.26 31.71 0.20 -0.15 16 24 C 0.09 0.31 6.45 86.89 0.56 0.88 16 25 N -0.62 -7.40 2.95 -842.54 -2.49 -9.89 16 26 C 0.09 0.88 11.14 127.77 1.42 2.31 16 27 C 0.47 8.76 5.63 87.90 0.49 9.25 16 28 O -0.58 -16.78 16.20 -3.03 -0.05 -16.83 16 29 H 0.11 0.69 5.67 -2.39 -0.01 0.68 16 30 H 0.07 1.02 6.69 -2.39 -0.02 1.01 16 31 H 0.01 0.23 6.47 -2.39 -0.02 0.22 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.40 7.97 -2.38 -0.02 1.38 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.11 4.27 8.14 -2.39 -0.02 4.25 16 37 H 0.11 4.16 8.14 -2.40 -0.02 4.14 16 38 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.06 1.60 7.69 -2.39 -0.02 1.58 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 42 H 0.12 0.07 7.77 -2.39 -0.02 0.05 16 43 H 0.09 0.17 6.25 -2.39 -0.01 0.15 16 44 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.05 0.88 7.53 -2.39 -0.02 0.86 16 46 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -84.23 380.86 0.14 -84.09 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.93 Total: 8.37 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 7.36 Total: 10.47 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -8.90 Total: -97.51 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.10 Total: -43.03 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.90 Total: 47.84 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.05 Total: -10.22 kcal Total: -84.23 0.14 -84.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188974138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.027 kcal (2) G-P(sol) polarization free energy of solvation -84.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds