Wall clock time and date at job start Sat Apr 11 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46906 * 111.00225 * 2 1 4 4 H 1.09001 * 110.88529 * 67.82825 * 3 2 1 5 5 C 1.55154 * 111.00269 * 303.95304 * 3 2 1 6 6 C 1.54325 * 102.94325 * 206.38065 * 5 3 2 7 7 N 1.47025 * 107.26890 * 22.19621 * 6 5 3 8 8 C 1.34771 * 125.64876 * 181.02467 * 7 6 5 9 9 O 1.21280 * 120.00323 * 180.02562 * 8 7 6 10 10 C 1.50702 * 120.00110 * 0.02562 * 8 7 6 11 11 S 1.80994 * 109.47402 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00118 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99846 * 359.97438 * 12 11 10 14 14 C 1.38803 * 119.99717 * 180.28027 * 12 11 10 15 15 N 1.31628 * 120.00079 * 359.71895 * 14 12 11 16 16 Si 1.86803 * 119.99838 * 179.72530 * 14 12 11 17 17 H 1.48505 * 109.47027 * 59.99113 * 16 14 12 18 18 H 1.48499 * 109.47216 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46973 * 299.99937 * 16 14 12 20 20 C 1.47424 * 108.70349 * 1.28288 * 7 6 5 21 21 C 1.46901 * 110.99956 * 123.94755 * 2 1 3 22 22 H 1.09003 * 110.43714 * 182.85888 * 21 2 1 23 23 C 1.54637 * 110.48124 * 60.18259 * 21 2 1 24 24 C 1.54475 * 101.76631 * 266.11934 * 23 21 2 25 25 N 1.46772 * 105.47274 * 334.58473 * 24 23 21 26 26 C 1.46495 * 124.35114 * 196.99593 * 25 24 23 27 27 C 1.34418 * 111.29718 * 17.01737 * 25 24 23 28 28 O 1.21283 * 124.93768 * 179.62918 * 27 25 24 29 29 H 1.09007 * 109.47019 * 53.18684 * 1 2 3 30 30 H 1.09002 * 109.47129 * 173.18530 * 1 2 3 31 31 H 1.09002 * 109.47471 * 293.18753 * 1 2 3 32 32 H 1.09009 * 110.72250 * 88.02060 * 5 3 2 33 33 H 1.08999 * 110.71988 * 324.74567 * 5 3 2 34 34 H 1.09000 * 109.88558 * 262.77574 * 6 5 3 35 35 H 1.09004 * 109.87964 * 141.60745 * 6 5 3 36 36 H 1.09001 * 109.46921 * 60.00268 * 10 8 7 37 37 H 1.08995 * 109.46868 * 300.00581 * 10 8 7 38 38 H 0.97002 * 119.99802 * 180.02562 * 15 14 12 39 39 H 1.08998 * 110.37018 * 94.48281 * 20 7 6 40 40 H 1.08997 * 110.37052 * 216.81276 * 20 7 6 41 41 H 1.08995 * 110.96797 * 24.24164 * 23 21 2 42 42 H 1.09000 * 110.96786 * 147.99562 * 23 21 2 43 43 H 1.08997 * 110.24540 * 215.59140 * 24 23 21 44 44 H 1.08994 * 110.24703 * 93.58229 * 24 23 21 45 45 H 1.08997 * 109.47563 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.47213 * 300.00390 * 26 25 24 47 47 H 1.09000 * 109.47250 * 59.99924 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.7760 1.8720 0.9431 5 6 1.4395 2.1806 -1.2015 6 6 2.5358 3.2398 -1.4418 7 7 3.7811 2.7191 -0.8589 8 6 4.9682 3.3570 -0.8439 9 8 5.9337 2.8296 -0.3335 10 6 5.0960 4.7257 -1.4614 11 16 6.7993 5.3113 -1.2838 12 6 6.6657 6.8837 -2.0674 13 1 5.7186 7.2054 -2.4746 14 6 7.7793 7.7062 -2.1671 15 7 8.9338 7.3139 -1.6714 16 14 7.6395 9.3701 -3.0048 17 1 6.6411 10.2031 -2.2874 18 1 8.9598 10.0493 -2.9799 19 1 7.2062 9.1807 -4.4125 20 6 3.5177 1.3810 -0.2990 21 6 1.9954 -0.7659 1.1377 22 1 3.0842 -0.7179 1.1576 23 6 1.5168 -2.2347 1.0690 24 6 0.2482 -2.1942 1.9494 25 7 0.4469 -1.0693 2.8710 26 6 -0.3159 -0.8671 4.1052 27 6 1.4186 -0.2482 2.4368 28 8 1.7806 0.7606 3.0044 29 1 -0.3633 0.6158 -0.8228 30 1 -0.3633 -1.0204 -0.1219 31 1 -0.3634 0.4046 0.9446 32 1 0.4939 2.6565 -0.9416 33 1 1.3229 1.5409 -2.0763 34 1 2.2610 4.1751 -0.9543 35 1 2.6667 3.4016 -2.5118 36 1 4.4196 5.4162 -0.9575 37 1 4.8389 4.6724 -2.5193 38 1 9.7120 7.8890 -1.7407 39 1 3.7685 0.6092 -1.0265 40 1 4.0852 1.2359 0.6202 41 1 1.2723 -2.5178 0.0452 42 1 2.2630 -2.9082 1.4906 43 1 0.1462 -3.1251 2.5071 44 1 -0.6340 -2.0247 1.3322 45 1 0.0295 0.0398 4.6015 46 1 -1.3749 -0.7701 3.8661 47 1 -0.1696 -1.7210 4.7668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188974141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:23 Heat of formation + Delta-G solvation = -39.680034 kcal Electronic energy + Delta-G solvation = -27908.290337 eV Core-core repulsion = 24025.101288 eV Total energy + Delta-G solvation = -3883.189049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49828 -39.66998 -37.76542 -36.92333 -35.56088 -32.46432 -32.38318 -30.64874 -29.83290 -28.43698 -27.77373 -27.14679 -25.46058 -24.63178 -23.27108 -21.87357 -20.86439 -19.52498 -19.21037 -17.74411 -17.63907 -17.09261 -16.56895 -16.49548 -16.01310 -15.22533 -14.97978 -14.77000 -14.69141 -14.41568 -14.16110 -13.96327 -13.70320 -13.50009 -13.42661 -13.28551 -13.05313 -12.79998 -12.72665 -12.57989 -12.44134 -12.31087 -11.98310 -11.73539 -11.63455 -11.28023 -11.13067 -11.04761 -11.00305 -10.98235 -10.73302 -10.59998 -9.78187 -9.34018 -9.17866 -9.01707 -8.74821 -8.41538 -8.18233 -6.45060 -6.17040 -3.87364 2.10502 2.54907 2.89541 3.14403 3.26311 3.26754 3.31559 3.43693 3.71989 3.90285 3.95368 4.17012 4.24980 4.38615 4.48372 4.52871 4.80154 4.81415 4.86272 4.91196 4.93214 5.00574 5.10120 5.16836 5.17765 5.21721 5.27009 5.29700 5.36007 5.40681 5.52973 5.55955 5.57728 5.67887 5.80407 5.85496 5.88118 6.00582 6.01502 6.20178 6.41674 6.43601 6.61168 6.63134 7.63435 7.74833 7.74990 8.39455 8.63720 9.27812 10.90359 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026767 B = 0.002118 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.810144 B =13217.023062 C =13438.843091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.499 5.499 3 C 0.058 3.942 4 H 0.075 0.925 5 C -0.122 4.122 6 C 0.105 3.895 7 N -0.625 5.625 8 C 0.549 3.451 9 O -0.515 6.515 10 C -0.146 4.146 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.121 3.879 21 C 0.049 3.951 22 H 0.121 0.879 23 C -0.126 4.126 24 C 0.096 3.904 25 N -0.624 5.624 26 C 0.092 3.908 27 C 0.487 3.513 28 O -0.519 6.519 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.060 0.940 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.112 -21.939 4.580 33.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.224 5.224 3 C -0.051 4.051 4 H 0.093 0.907 5 C -0.160 4.160 6 C -0.019 4.019 7 N -0.363 5.363 8 C 0.338 3.662 9 O -0.389 6.389 10 C -0.296 4.296 11 S 0.166 5.834 12 C -0.683 4.683 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.002 4.002 21 C -0.063 4.063 22 H 0.139 0.861 23 C -0.164 4.164 24 C -0.027 4.027 25 N -0.360 5.360 26 C -0.050 4.050 27 C 0.272 3.728 28 O -0.393 6.393 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.081 -22.291 5.320 32.526 hybrid contribution -1.714 2.029 -0.275 2.670 sum -24.795 -20.262 5.045 32.416 Atomic orbital electron populations 1.22681 0.86914 1.02944 1.01188 1.62351 1.08242 1.13555 1.38213 1.23030 0.95254 0.87816 0.98969 0.90706 1.22725 0.97831 0.97010 0.98457 1.21965 0.83691 0.97209 0.99063 1.48383 1.09463 1.18375 1.60035 1.20009 0.80677 0.86655 0.78886 1.90707 1.36417 1.67388 1.44382 1.23497 1.07970 0.95132 1.03020 1.85401 1.01128 1.19670 1.77190 1.22821 0.98862 1.03036 1.43566 0.90997 1.24993 0.94484 0.98704 0.95428 1.70013 1.00143 1.37228 1.42914 0.86225 0.77507 0.82071 0.79693 1.19959 1.20828 1.19944 1.22060 0.93415 0.85337 0.99413 1.22700 1.02215 0.94658 0.86728 0.86108 1.22705 0.96956 0.94863 1.01922 1.22287 0.98905 0.89616 0.91879 1.48274 1.37383 1.26565 1.23740 1.21566 0.95424 1.02875 0.85172 1.21964 0.79923 0.83505 0.87378 1.90772 1.62366 1.24718 1.61470 0.90373 0.90401 0.95290 0.90296 0.89342 0.91264 0.90924 0.89327 0.89279 0.92156 0.90634 0.90545 0.87710 0.89042 0.90196 0.90699 0.89949 0.92119 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 7.97 60.06 0.48 0.54 16 2 N -0.50 -4.13 4.65 -224.20 -1.04 -5.17 16 3 C 0.06 0.63 2.54 -65.44 -0.17 0.46 16 4 H 0.08 1.00 6.53 -51.93 -0.34 0.67 16 5 C -0.12 -1.09 5.05 -24.90 -0.13 -1.22 16 6 C 0.10 1.23 6.48 -3.06 -0.02 1.21 16 7 N -0.62 -9.92 3.32 -170.38 -0.57 -10.48 16 8 C 0.55 11.37 7.87 -10.99 -0.09 11.29 16 9 O -0.51 -12.67 16.12 5.56 0.09 -12.58 16 10 C -0.15 -3.14 5.35 36.01 0.19 -2.95 16 11 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 12 C -0.53 -15.59 9.50 30.94 0.29 -15.30 16 13 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 14 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 15 N -0.87 -26.68 13.22 55.49 0.73 -25.95 16 16 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.12 1.66 5.65 -2.41 -0.01 1.65 16 21 C 0.05 0.41 3.05 -67.72 -0.21 0.20 16 22 H 0.12 1.13 7.14 -51.93 -0.37 0.76 16 23 C -0.13 -0.57 6.24 -25.10 -0.16 -0.73 16 24 C 0.10 0.39 6.47 -3.12 -0.02 0.37 16 25 N -0.62 -4.61 3.01 -180.30 -0.54 -5.15 16 26 C 0.09 0.55 11.14 59.84 0.67 1.21 16 27 C 0.49 5.21 5.63 -10.86 -0.06 5.15 16 28 O -0.52 -8.00 16.09 5.56 0.09 -7.91 16 29 H 0.08 0.44 6.67 -51.93 -0.35 0.10 16 30 H 0.08 0.33 5.44 -51.93 -0.28 0.05 16 31 H 0.03 0.22 6.66 -51.93 -0.35 -0.12 16 32 H 0.08 0.58 7.97 -51.92 -0.41 0.17 16 33 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 37 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.20 7.79 -51.93 -0.40 0.79 16 41 H 0.10 0.36 7.79 -51.93 -0.40 -0.04 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 0.22 6.22 -51.93 -0.32 -0.10 16 45 H 0.08 0.65 7.53 -51.93 -0.39 0.26 16 46 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -38.23 383.54 -9.41 -47.63 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.39 Total: -2.93 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 0.68 Total: 3.92 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -1.42 Total: -46.76 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.18 Total: -20.50 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.23 -9.41 -47.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188974141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.953 kcal (2) G-P(sol) polarization free energy of solvation -38.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds