Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99923 * 2 1 4 4 C 1.38972 * 120.00345 * 179.97438 * 2 1 3 5 5 C 1.39711 * 120.03125 * 10.00084 * 4 2 1 6 6 N 1.31895 * 120.08885 * 179.97438 * 5 4 2 7 7 C 1.32227 * 120.17023 * 359.72145 * 6 5 4 8 8 C 1.39208 * 120.06358 * 0.52770 * 7 6 5 9 9 C 1.48119 * 120.04552 * 179.75549 * 8 7 6 10 10 O 1.21522 * 119.99814 * 5.03772 * 9 8 7 11 11 N 1.34779 * 120.00090 * 184.77096 * 9 8 7 12 12 C 1.46501 * 119.99851 * 175.52674 * 11 9 8 13 13 C 1.50701 * 109.47254 * 85.00344 * 12 11 9 14 14 H 1.08006 * 119.99840 * 4.99753 * 13 12 11 15 15 C 1.37874 * 120.00087 * 184.99951 * 13 12 11 16 16 N 1.31521 * 119.99861 * 184.99809 * 15 13 12 17 17 Si 1.86798 * 119.99908 * 4.99676 * 15 13 12 18 18 H 1.48500 * 109.47021 * 94.99680 * 17 15 13 19 19 H 1.48503 * 109.47025 * 214.99303 * 17 15 13 20 20 H 1.48491 * 109.47287 * 334.99130 * 17 15 13 21 21 C 1.46495 * 119.99756 * 355.51989 * 11 9 8 22 22 C 1.50704 * 109.47099 * 95.47377 * 21 11 9 23 23 C 1.38671 * 120.41347 * 274.90613 * 22 21 11 24 24 C 1.38634 * 118.41739 * 179.78171 * 23 22 21 25 25 C 1.38225 * 119.16010 * 0.50736 * 24 23 22 26 26 N 1.31852 * 120.76312 * 359.73093 * 25 24 23 27 27 C 1.31887 * 121.72839 * 359.97438 * 26 25 24 28 28 N 1.32306 * 120.03526 * 189.96751 * 4 2 1 29 29 H 1.08999 * 109.47911 * 270.00201 * 1 2 3 30 30 H 1.09000 * 109.46864 * 30.00965 * 1 2 3 31 31 H 1.09004 * 109.46764 * 150.00032 * 1 2 3 32 32 H 1.08995 * 109.46724 * 185.01932 * 3 2 1 33 33 H 1.09001 * 109.46809 * 305.02059 * 3 2 1 34 34 H 1.09001 * 109.46603 * 65.01901 * 3 2 1 35 35 H 1.08006 * 119.95276 * 359.94182 * 5 4 2 36 36 H 1.07995 * 119.97068 * 180.25838 * 7 6 5 37 37 H 1.08997 * 109.46775 * 205.00140 * 12 11 9 38 38 H 1.09000 * 109.47127 * 325.00264 * 12 11 9 39 39 H 0.96997 * 119.99790 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.46966 * 215.47094 * 21 11 9 41 41 H 1.08999 * 109.47647 * 335.47219 * 21 11 9 42 42 H 1.08001 * 120.79259 * 0.02562 * 23 22 21 43 43 H 1.08000 * 120.41693 * 180.21491 * 24 23 22 44 44 H 1.07998 * 119.61907 * 179.74520 * 25 24 23 45 45 H 1.07999 * 119.61773 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1599 -1.2035 0.0005 5 6 1.4780 -2.4048 -0.2090 6 7 2.1365 -3.5476 -0.2092 7 6 3.4446 -3.5608 -0.0168 8 6 4.1300 -2.3683 0.1978 9 6 5.5946 -2.3841 0.4187 10 8 6.2124 -3.4261 0.3221 11 7 6.2428 -1.2419 0.7216 12 6 7.6733 -1.2729 1.0362 13 6 8.4701 -1.2163 -0.2416 14 1 7.9656 -1.0814 -1.1871 15 6 9.8430 -1.3368 -0.2039 16 7 10.5466 -1.1894 -1.3053 17 14 10.7039 -1.7093 1.4115 18 1 10.9268 -3.1729 1.5276 19 1 12.0107 -1.0050 1.4500 20 1 9.8586 -1.2462 2.5411 21 6 5.5169 0.0304 0.7360 22 6 5.0769 0.3418 2.1433 23 6 3.8927 -0.1810 2.6405 24 6 3.5300 0.1285 3.9422 25 6 4.3496 0.9508 4.6924 26 7 5.4665 1.4341 4.1849 27 6 5.8458 1.1561 2.9528 28 7 3.4680 -1.2128 0.1988 29 1 -0.3635 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3633 -0.8900 -0.5139 32 1 3.2657 1.0715 -0.0899 33 1 1.8684 1.8783 -0.8416 34 1 2.0032 1.8004 0.9316 35 1 0.4101 -2.3976 -0.3705 36 1 3.9812 -4.4980 -0.0217 37 1 7.9265 -0.4161 1.6605 38 1 7.9080 -2.1937 1.5703 39 1 11.5125 -1.2738 -1.2786 40 1 6.1698 0.8253 0.3752 41 1 4.6423 -0.0428 0.0897 42 1 3.2697 -0.8174 2.0295 43 1 2.6161 -0.2640 4.3633 44 1 4.0721 1.2000 5.7059 45 1 6.7676 1.5702 2.5718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190721816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = 113.186664 kcal Electronic energy + Delta-G solvation = -30709.948283 eV Core-core repulsion = 26730.236831 eV Total energy + Delta-G solvation = -3979.711451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58546 -39.99186 -38.85640 -37.18010 -35.63656 -34.28000 -32.79265 -32.11969 -31.29680 -30.97543 -28.91072 -28.28294 -26.21924 -25.91196 -24.90989 -23.54169 -22.84422 -22.03625 -21.73681 -19.54545 -18.05751 -17.39597 -17.26223 -16.91500 -16.69366 -16.16425 -16.11507 -15.80411 -15.28165 -15.25170 -14.70460 -14.60207 -14.21452 -13.96662 -13.56473 -13.43476 -13.17196 -13.02981 -12.94300 -12.85242 -12.79817 -12.50871 -12.36770 -11.97577 -11.80674 -11.47453 -11.27043 -11.04557 -10.74198 -10.51585 -10.24172 -10.11219 -9.92122 -9.64013 -9.56832 -9.32664 -8.89899 -8.67033 -8.57097 -8.00033 -7.78890 -6.09220 -4.07791 0.47203 1.08130 1.20785 1.41950 2.43817 3.07800 3.30209 3.36803 3.39648 3.48221 3.85062 3.93206 4.15978 4.16753 4.31240 4.40456 4.56932 4.67986 4.87868 4.93174 4.95096 5.02726 5.07471 5.11360 5.16634 5.21799 5.25131 5.27568 5.30039 5.32326 5.56058 5.64332 5.81049 5.96806 6.07399 6.20553 6.30224 6.43326 6.52042 6.61774 6.81906 6.85140 6.89399 7.20341 7.27955 7.57172 7.65337 8.07020 8.09519 8.42463 8.72914 8.95061 9.51145 11.03905 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010960 B = 0.004655 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.167281 B = 6013.479752 C = 7442.482018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.606 5.606 3 C 0.086 3.914 4 C 0.343 3.657 5 C 0.007 3.993 6 N -0.402 5.402 7 C 0.039 3.961 8 C 0.098 3.902 9 C 0.560 3.440 10 O -0.514 6.514 11 N -0.562 5.562 12 C 0.219 3.781 13 C -0.527 4.527 14 H 0.076 0.924 15 C 0.076 3.924 16 N -0.894 5.894 17 Si 0.873 3.127 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.112 3.888 22 C -0.133 4.133 23 C -0.063 4.063 24 C -0.184 4.184 25 C 0.090 3.910 26 N -0.488 5.488 27 C 0.109 3.891 28 N -0.469 5.469 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.168 0.832 36 H 0.181 0.819 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.083 0.917 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.124 0.876 44 H 0.148 0.852 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.515 5.509 5.713 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.321 5.321 3 C -0.057 4.057 4 C 0.105 3.895 5 C -0.163 4.163 6 N -0.114 5.114 7 C -0.121 4.121 8 C -0.043 4.043 9 C 0.343 3.657 10 O -0.389 6.389 11 N -0.290 5.290 12 C 0.099 3.901 13 C -0.566 4.566 14 H 0.094 0.906 15 C -0.127 4.127 16 N -0.532 5.532 17 Si 0.700 3.300 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.011 4.011 22 C -0.136 4.136 23 C -0.090 4.090 24 C -0.204 4.204 25 C -0.068 4.068 26 N -0.196 5.196 27 C -0.048 4.048 28 N -0.197 5.197 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.185 0.815 36 H 0.198 0.802 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.142 0.858 44 H 0.166 0.834 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.470 5.613 6.103 23.951 hybrid contribution 0.022 -0.549 0.350 0.651 sum -22.448 5.063 6.453 23.900 Atomic orbital electron populations 1.21766 0.77933 1.03352 1.01920 1.46140 1.05230 1.02558 1.78197 1.21855 0.98854 0.83881 1.01064 1.19646 0.89795 0.87790 0.92319 1.23403 1.01627 0.87381 1.03887 1.68389 1.08398 1.27572 1.07060 1.23413 0.89867 0.99381 0.99441 1.22393 0.96138 0.89471 0.96273 1.17612 0.84065 0.84773 0.79211 1.90810 1.66269 1.31022 1.50828 1.47829 1.10840 1.05284 1.65085 1.19773 0.75461 0.97438 0.97456 1.21234 0.91462 1.50718 0.93147 0.90568 1.24816 0.97176 0.94423 0.96258 1.69897 1.06661 1.49432 1.27257 0.86898 0.79443 0.79230 0.84434 1.19952 1.21004 1.19009 1.21563 0.99927 0.86727 0.92923 1.21377 0.95237 0.97997 0.98985 1.21983 0.95793 0.96584 0.94627 1.22112 1.01550 1.01031 0.95658 1.22659 0.90461 0.94050 0.99600 1.67696 1.15705 1.22631 1.13590 1.22870 0.98526 0.94453 0.88980 1.68357 1.06081 1.27477 1.17750 0.92577 0.90537 0.90911 0.89056 0.92195 0.92635 0.81531 0.80241 0.94943 0.94849 0.92535 0.89842 0.83601 0.84604 0.85753 0.83427 0.82630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.43 59.85 0.62 1.04 16 2 N -0.61 -4.93 3.39 -189.51 -0.64 -5.57 16 3 C 0.09 0.69 10.68 59.85 0.64 1.33 16 4 C 0.34 3.76 6.44 -154.91 -1.00 2.76 16 5 C 0.01 0.07 10.47 -16.97 -0.18 -0.11 16 6 N -0.40 -5.27 10.48 -12.54 -0.13 -5.40 16 7 C 0.04 0.58 10.76 -17.02 -0.18 0.39 16 8 C 0.10 1.58 6.36 -82.87 -0.53 1.06 16 9 C 0.56 11.56 7.61 -12.20 -0.09 11.46 16 10 O -0.51 -12.40 16.06 5.35 0.09 -12.32 16 11 N -0.56 -11.59 2.45 -177.45 -0.44 -12.02 16 12 C 0.22 5.29 4.08 -5.19 -0.02 5.27 16 13 C -0.53 -14.93 9.89 -34.44 -0.34 -15.27 16 14 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 16 N -0.89 -27.36 13.96 55.43 0.77 -26.59 16 17 Si 0.87 21.70 27.42 -169.99 -4.66 17.04 16 18 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.29 6.65 56.52 0.38 -5.91 16 21 C 0.11 1.84 5.13 -5.19 -0.03 1.81 16 22 C -0.13 -1.99 5.47 -104.48 -0.57 -2.56 16 23 C -0.06 -0.86 9.38 -39.28 -0.37 -1.23 16 24 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 25 C 0.09 1.14 11.18 -17.55 -0.20 0.95 16 26 N -0.49 -7.46 10.36 -13.26 -0.14 -7.59 16 27 C 0.11 1.68 10.84 -17.55 -0.19 1.49 16 28 N -0.47 -6.37 2.48 -8.81 -0.02 -6.39 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 31 H 0.07 0.25 5.87 -51.93 -0.30 -0.05 16 32 H 0.09 0.91 5.16 -51.93 -0.27 0.65 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.17 1.16 5.98 -52.48 -0.31 0.85 16 36 H 0.18 2.64 7.64 -52.49 -0.40 2.24 16 37 H 0.03 0.75 7.66 -51.93 -0.40 0.35 16 38 H 0.03 0.86 6.64 -51.93 -0.35 0.52 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 41 H 0.15 2.20 2.61 -79.86 -0.21 1.99 16 42 H 0.14 1.83 4.02 -52.49 -0.21 1.62 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -34.81 368.43 -7.95 -42.76 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.41 Total: 2.66 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -2.93 Total: 7.88 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.59 Total: -63.57 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.66 Total: 17.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.81 -7.95 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190721816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.945 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds