Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99923 * 2 1 4 4 C 1.38972 * 120.00345 * 179.97438 * 2 1 3 5 5 C 1.39711 * 120.03125 * 10.00084 * 4 2 1 6 6 N 1.31895 * 120.08885 * 179.97438 * 5 4 2 7 7 C 1.32227 * 120.17023 * 359.72145 * 6 5 4 8 8 C 1.39208 * 120.06358 * 0.52770 * 7 6 5 9 9 C 1.48119 * 120.04552 * 179.75549 * 8 7 6 10 10 O 1.21522 * 119.99814 * 5.03772 * 9 8 7 11 11 N 1.34779 * 120.00090 * 184.77096 * 9 8 7 12 12 C 1.46501 * 119.99851 * 175.52674 * 11 9 8 13 13 C 1.50701 * 109.47254 * 85.00344 * 12 11 9 14 14 H 1.08006 * 119.99840 * 4.99753 * 13 12 11 15 15 C 1.37874 * 120.00087 * 184.99951 * 13 12 11 16 16 N 1.31521 * 119.99861 * 184.99809 * 15 13 12 17 17 Si 1.86798 * 119.99908 * 4.99676 * 15 13 12 18 18 H 1.48500 * 109.47021 * 94.99680 * 17 15 13 19 19 H 1.48503 * 109.47025 * 214.99303 * 17 15 13 20 20 H 1.48491 * 109.47287 * 334.99130 * 17 15 13 21 21 C 1.46495 * 119.99756 * 355.51989 * 11 9 8 22 22 C 1.50704 * 109.47099 * 95.47377 * 21 11 9 23 23 C 1.38671 * 120.41347 * 274.90613 * 22 21 11 24 24 C 1.38634 * 118.41739 * 179.78171 * 23 22 21 25 25 C 1.38225 * 119.16010 * 0.50736 * 24 23 22 26 26 N 1.31852 * 120.76312 * 359.73093 * 25 24 23 27 27 C 1.31887 * 121.72839 * 359.97438 * 26 25 24 28 28 N 1.32306 * 120.03526 * 189.96751 * 4 2 1 29 29 H 1.08999 * 109.47911 * 270.00201 * 1 2 3 30 30 H 1.09000 * 109.46864 * 30.00965 * 1 2 3 31 31 H 1.09004 * 109.46764 * 150.00032 * 1 2 3 32 32 H 1.08995 * 109.46724 * 185.01932 * 3 2 1 33 33 H 1.09001 * 109.46809 * 305.02059 * 3 2 1 34 34 H 1.09001 * 109.46603 * 65.01901 * 3 2 1 35 35 H 1.08006 * 119.95276 * 359.94182 * 5 4 2 36 36 H 1.07995 * 119.97068 * 180.25838 * 7 6 5 37 37 H 1.08997 * 109.46775 * 205.00140 * 12 11 9 38 38 H 1.09000 * 109.47127 * 325.00264 * 12 11 9 39 39 H 0.96997 * 119.99790 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.46966 * 215.47094 * 21 11 9 41 41 H 1.08999 * 109.47647 * 335.47219 * 21 11 9 42 42 H 1.08001 * 120.79259 * 0.02562 * 23 22 21 43 43 H 1.08000 * 120.41693 * 180.21491 * 24 23 22 44 44 H 1.07998 * 119.61907 * 179.74520 * 25 24 23 45 45 H 1.07999 * 119.61773 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1599 -1.2035 0.0005 5 6 1.4780 -2.4048 -0.2090 6 7 2.1365 -3.5476 -0.2092 7 6 3.4446 -3.5608 -0.0168 8 6 4.1300 -2.3683 0.1978 9 6 5.5946 -2.3841 0.4187 10 8 6.2124 -3.4261 0.3221 11 7 6.2428 -1.2419 0.7216 12 6 7.6733 -1.2729 1.0362 13 6 8.4701 -1.2163 -0.2416 14 1 7.9656 -1.0814 -1.1871 15 6 9.8430 -1.3368 -0.2039 16 7 10.5466 -1.1894 -1.3053 17 14 10.7039 -1.7093 1.4115 18 1 10.9268 -3.1729 1.5276 19 1 12.0107 -1.0050 1.4500 20 1 9.8586 -1.2462 2.5411 21 6 5.5169 0.0304 0.7360 22 6 5.0769 0.3418 2.1433 23 6 3.8927 -0.1810 2.6405 24 6 3.5300 0.1285 3.9422 25 6 4.3496 0.9508 4.6924 26 7 5.4665 1.4341 4.1849 27 6 5.8458 1.1561 2.9528 28 7 3.4680 -1.2128 0.1988 29 1 -0.3635 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3633 -0.8900 -0.5139 32 1 3.2657 1.0715 -0.0899 33 1 1.8684 1.8783 -0.8416 34 1 2.0032 1.8004 0.9316 35 1 0.4101 -2.3976 -0.3705 36 1 3.9812 -4.4980 -0.0217 37 1 7.9265 -0.4161 1.6605 38 1 7.9080 -2.1937 1.5703 39 1 11.5125 -1.2738 -1.2786 40 1 6.1698 0.8253 0.3752 41 1 4.6423 -0.0428 0.0897 42 1 3.2697 -0.8174 2.0295 43 1 2.6161 -0.2640 4.3633 44 1 4.0721 1.2000 5.7059 45 1 6.7676 1.5702 2.5718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190721816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 89.932981 kcal Electronic energy + Delta-G solvation = -30710.956638 eV Core-core repulsion = 26730.236831 eV Total energy + Delta-G solvation = -3980.719807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.65574 -41.09036 -40.32890 -37.98209 -37.13203 -35.53248 -34.65756 -33.42457 -32.51460 -31.99527 -30.26937 -29.36156 -27.43156 -26.76478 -26.21341 -24.78394 -24.16417 -23.20817 -22.90056 -20.92965 -19.19659 -19.12436 -18.45382 -18.21000 -17.81733 -17.34157 -17.15890 -16.90946 -16.73180 -16.47575 -15.99443 -15.60646 -15.38061 -15.21108 -14.86526 -14.70010 -14.43135 -14.34574 -14.11856 -14.03041 -13.89123 -13.70042 -13.27786 -13.15169 -13.02092 -12.70136 -12.61665 -12.53580 -12.23455 -12.09240 -11.81029 -11.77705 -11.41589 -11.10922 -10.82784 -10.73090 -10.48340 -10.03688 -9.82525 -9.50721 -8.71867 -8.35374 -6.39207 -0.62295 0.09921 0.13648 0.35013 1.30330 1.33990 1.42839 1.66771 1.74811 2.06307 2.28828 2.70741 2.80864 2.99403 3.09528 3.24130 3.33092 3.54589 3.68924 3.91866 3.96504 4.01772 4.12969 4.16238 4.24489 4.34276 4.46267 4.54843 4.59362 4.68632 4.72382 4.80029 4.82110 4.84315 4.92211 5.00592 5.11777 5.13749 5.22819 5.33673 5.42694 5.61983 5.65971 5.78915 6.04527 6.19993 6.35291 6.44796 6.61335 6.71200 7.02138 7.09553 7.26150 8.81541 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010960 B = 0.004655 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.167281 B = 6013.479752 C = 7442.482018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.595 5.595 3 C 0.083 3.917 4 C 0.346 3.654 5 C 0.036 3.964 6 N -0.410 5.410 7 C 0.029 3.971 8 C 0.078 3.922 9 C 0.554 3.446 10 O -0.566 6.566 11 N -0.570 5.570 12 C 0.230 3.770 13 C -0.531 4.531 14 H 0.032 0.968 15 C 0.019 3.981 16 N -0.940 5.940 17 Si 0.941 3.059 18 H -0.276 1.276 19 H -0.271 1.271 20 H -0.247 1.247 21 C 0.115 3.885 22 C -0.140 4.140 23 C -0.063 4.063 24 C -0.173 4.173 25 C 0.089 3.911 26 N -0.509 5.509 27 C 0.092 3.908 28 N -0.480 5.480 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.213 0.787 36 H 0.169 0.831 37 H 0.047 0.953 38 H 0.017 0.983 39 H 0.269 0.731 40 H 0.071 0.929 41 H 0.164 0.836 42 H 0.140 0.860 43 H 0.159 0.841 44 H 0.181 0.819 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.635 6.585 7.812 29.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.309 5.309 3 C -0.060 4.060 4 C 0.104 3.896 5 C -0.137 4.137 6 N -0.123 5.123 7 C -0.128 4.128 8 C -0.059 4.059 9 C 0.340 3.660 10 O -0.445 6.445 11 N -0.298 5.298 12 C 0.108 3.892 13 C -0.570 4.570 14 H 0.050 0.950 15 C -0.179 4.179 16 N -0.580 5.580 17 Si 0.764 3.236 18 H -0.202 1.202 19 H -0.196 1.196 20 H -0.170 1.170 21 C -0.007 4.007 22 C -0.143 4.143 23 C -0.090 4.090 24 C -0.193 4.193 25 C -0.068 4.068 26 N -0.218 5.218 27 C -0.064 4.064 28 N -0.209 5.209 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.230 0.770 36 H 0.186 0.814 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.179 0.821 42 H 0.157 0.843 43 H 0.177 0.823 44 H 0.198 0.802 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -26.612 6.727 8.208 28.650 hybrid contribution 0.970 -0.738 -0.379 1.277 sum -25.642 5.989 7.829 27.471 Atomic orbital electron populations 1.22128 0.75103 1.05195 1.03400 1.46481 1.06745 1.01442 1.76185 1.21905 0.97585 0.84005 1.02491 1.19909 0.88876 0.89347 0.91457 1.24177 1.03285 0.86180 1.00050 1.68469 1.07217 1.28804 1.07774 1.23193 0.90746 0.98518 1.00362 1.21523 0.93589 0.90929 0.99888 1.18268 0.86154 0.83831 0.77774 1.90752 1.68100 1.32621 1.52987 1.47875 1.09695 1.07097 1.65090 1.19396 0.77612 0.96919 0.95243 1.21409 0.92068 1.50287 0.93188 0.95000 1.25711 0.97961 0.94106 1.00151 1.70034 1.07218 1.50895 1.29809 0.85819 0.78743 0.78825 0.80225 1.20154 1.19579 1.17020 1.21727 0.99762 0.84399 0.94843 1.21134 0.96254 0.98986 0.97934 1.22070 0.95155 0.96222 0.95524 1.22446 1.02369 0.99873 0.94598 1.23260 0.89435 0.93172 1.00920 1.67707 1.17159 1.23586 1.13337 1.22824 0.98744 0.95277 0.89579 1.68055 1.07625 1.26262 1.18920 0.91163 0.88593 0.89293 0.91520 0.90163 0.91616 0.77048 0.81402 0.93556 0.96451 0.92187 0.91018 0.82055 0.84305 0.82349 0.80155 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 10.43 127.77 1.33 1.62 16 2 N -0.60 -7.27 3.39 -753.48 -2.55 -9.82 16 3 C 0.08 1.08 10.68 127.77 1.36 2.44 16 4 C 0.35 6.58 6.44 133.24 0.86 7.44 16 5 C 0.04 0.61 10.47 85.04 0.89 1.51 16 6 N -0.41 -10.02 10.48 -193.58 -2.03 -12.05 16 7 C 0.03 0.89 10.76 84.87 0.91 1.80 16 8 C 0.08 2.61 6.36 41.80 0.27 2.88 16 9 C 0.55 24.28 7.61 86.87 0.66 24.94 16 10 O -0.57 -29.34 16.06 -3.78 -0.06 -29.41 16 11 N -0.57 -24.82 2.45 -833.61 -2.05 -26.87 16 12 C 0.23 11.66 4.08 85.63 0.35 12.01 16 13 C -0.53 -31.90 9.89 25.60 0.25 -31.64 16 14 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 15 C 0.02 1.16 5.47 84.65 0.46 1.62 16 16 N -0.94 -59.99 13.96 21.45 0.30 -59.69 16 17 Si 0.94 45.98 27.42 68.60 1.88 47.86 16 18 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.25 -11.21 6.65 99.48 0.66 -10.54 16 21 C 0.11 3.93 5.13 85.64 0.44 4.37 16 22 C -0.14 -4.19 5.47 -19.77 -0.11 -4.30 16 23 C -0.06 -1.60 9.38 22.47 0.21 -1.39 16 24 C -0.17 -3.59 10.11 22.36 0.23 -3.37 16 25 C 0.09 2.01 11.18 84.69 0.95 2.96 16 26 N -0.51 -14.88 10.36 -195.85 -2.03 -16.90 16 27 C 0.09 2.85 10.84 84.67 0.92 3.77 16 28 N -0.48 -12.70 2.48 -181.80 -0.45 -13.15 16 29 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.10 0.06 8.07 -2.39 -0.02 0.04 16 31 H 0.09 0.06 5.87 -2.38 -0.01 0.04 16 32 H 0.07 1.25 5.16 -2.39 -0.01 1.23 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.21 1.66 5.98 -2.91 -0.02 1.64 16 36 H 0.17 5.33 7.64 -2.91 -0.02 5.30 16 37 H 0.05 2.20 7.66 -2.39 -0.02 2.19 16 38 H 0.02 0.94 6.64 -2.39 -0.02 0.92 16 39 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 40 H 0.07 2.53 8.03 -2.38 -0.02 2.51 16 41 H 0.16 5.02 2.61 -57.53 -0.15 4.87 16 42 H 0.14 3.46 4.02 -2.91 -0.01 3.45 16 43 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 44 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 45 H 0.15 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -81.85 368.43 3.85 -78.00 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.85 Total: 15.36 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 9.98 Total: 26.66 kcal Atomic # 7 Polarization: -129.67 SS G_CDS: -8.81 Total: -138.48 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.06 Total: -29.41 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -81.85 3.85 -78.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190721816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.932 kcal (2) G-P(sol) polarization free energy of solvation -81.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds