Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46764 * 124.35282 * 2 1 4 4 C 1.54484 * 105.47181 * 196.99816 * 3 2 1 5 5 C 1.54624 * 101.76286 * 334.58202 * 4 3 2 6 6 H 1.09000 * 110.48926 * 266.12016 * 5 4 3 7 7 N 1.46906 * 110.48026 * 143.48053 * 5 4 3 8 8 C 1.46265 * 110.99700 * 178.76917 * 7 5 4 9 9 C 1.47545 * 114.37223 * 148.55133 * 8 7 5 10 10 C 1.54945 * 109.73315 * 62.22440 * 9 8 7 11 11 N 1.44682 * 109.51842 * 290.51558 * 10 9 8 12 12 C 1.34770 * 118.55182 * 269.10035 * 11 10 9 13 13 O 1.21282 * 120.00148 * 180.02562 * 12 11 10 14 14 C 1.50699 * 119.99978 * 0.02562 * 12 11 10 15 15 S 1.80996 * 109.47318 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00179 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00215 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00119 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00021 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99698 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46767 * 90.00151 * 20 18 16 22 22 H 1.48498 * 109.46656 * 209.99605 * 20 18 16 23 23 H 1.48496 * 109.47001 * 329.99798 * 20 18 16 24 24 C 1.47783 * 122.90045 * 89.08115 * 11 10 9 25 25 C 1.44760 * 111.00282 * 55.28336 * 7 5 4 26 26 C 1.34424 * 124.34411 * 179.97438 * 2 1 3 27 27 O 1.21279 * 124.94294 * 359.34446 * 26 2 1 28 28 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46709 * 299.99882 * 1 2 3 30 30 H 1.08997 * 109.47129 * 59.99665 * 1 2 3 31 31 H 1.09002 * 110.24057 * 315.99681 * 3 2 1 32 32 H 1.08999 * 110.24100 * 77.90950 * 3 2 1 33 33 H 1.09000 * 110.96838 * 92.70823 * 4 3 2 34 34 H 1.09000 * 110.96325 * 216.42866 * 4 3 2 35 35 H 1.08995 * 108.50778 * 269.81962 * 8 7 5 36 36 H 1.09003 * 108.50211 * 27.44699 * 8 7 5 37 37 H 1.09006 * 109.42218 * 182.30213 * 9 8 7 38 38 H 1.08999 * 109.43034 * 302.13500 * 9 8 7 39 39 H 1.08995 * 109.46348 * 50.53324 * 10 9 8 40 40 H 1.09002 * 109.46157 * 170.50946 * 10 9 8 41 41 H 1.09004 * 109.47242 * 299.99984 * 14 12 11 42 42 H 1.08995 * 109.47554 * 59.99494 * 14 12 11 43 43 H 0.97000 * 120.00190 * 180.02562 * 19 18 16 44 44 H 1.09011 * 109.06249 * 78.64409 * 24 11 10 45 45 H 1.08996 * 109.06340 * 197.63791 * 24 11 10 46 46 H 1.09003 * 109.43316 * 337.91799 * 25 7 5 47 47 H 1.08993 * 109.43758 * 97.78866 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7012 0.7484 -0.4353 5 6 3.6897 -0.7379 -0.0093 6 1 4.1191 -0.8530 0.9859 7 7 4.4216 -1.5577 -0.9843 8 6 4.4427 -2.9624 -0.5772 9 6 4.4616 -3.9211 -1.6985 10 6 5.7518 -3.7240 -2.5336 11 7 5.6841 -2.4614 -3.2370 12 6 5.1578 -2.4426 -4.4775 13 8 5.0887 -1.3988 -5.0912 14 6 4.6551 -3.7186 -5.1022 15 16 4.0122 -3.3676 -6.7574 16 6 3.5082 -4.9857 -7.2393 17 1 3.6435 -5.8172 -6.5636 18 6 2.9363 -5.1917 -8.4872 19 7 2.5594 -6.4004 -8.8471 20 14 2.7016 -3.7533 -9.6559 21 1 3.9086 -3.6064 -10.5085 22 1 1.5161 -4.0019 -10.5148 23 1 2.4938 -2.5086 -8.8733 24 6 6.1663 -1.1915 -2.6551 25 6 5.7682 -1.0609 -1.1729 26 6 2.2234 -1.1099 0.0005 27 8 1.7945 -2.2442 0.0124 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8987 1.9381 -0.7105 32 1 2.3292 1.6439 1.0000 33 1 3.8274 0.8444 -1.5137 34 1 4.4754 1.3013 0.0968 35 1 5.3269 -3.1313 0.0373 36 1 3.5587 -3.1601 0.0291 37 1 4.4352 -4.9379 -1.3066 38 1 3.5905 -3.7550 -2.3323 39 1 6.6170 -3.7246 -1.8708 40 1 5.8457 -4.5364 -3.2542 41 1 5.4736 -4.4349 -5.1743 42 1 3.8599 -4.1366 -4.4851 43 1 2.1600 -6.5444 -9.7192 44 1 7.2527 -1.1523 -2.7366 45 1 5.7375 -0.3589 -3.2127 46 1 5.8130 -0.0130 -0.8763 47 1 6.4579 -1.6406 -0.5595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194919676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = -36.928228 kcal Electronic energy + Delta-G solvation = -28783.145833 eV Core-core repulsion = 24900.076112 eV Total energy + Delta-G solvation = -3883.069721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.12232 -39.77343 -37.82625 -36.71046 -35.16455 -32.96739 -32.36812 -32.15800 -29.76801 -28.24973 -27.09476 -26.51197 -25.57469 -25.34756 -22.76552 -21.54467 -20.93119 -19.69669 -18.88658 -17.57731 -17.36076 -17.06322 -16.61360 -16.27842 -15.86839 -15.35801 -15.26337 -14.93154 -14.64389 -14.21899 -14.09343 -13.93936 -13.87434 -13.53718 -13.22687 -13.14041 -12.82882 -12.75594 -12.68929 -12.56970 -12.29395 -12.22339 -11.84122 -11.68558 -11.53415 -11.31329 -11.18903 -11.00033 -10.93437 -10.75537 -10.48871 -9.78867 -9.75383 -9.28690 -9.03485 -8.93493 -8.59685 -8.40678 -8.35137 -6.82505 -6.22122 -3.92430 2.27647 2.70148 2.84073 3.11829 3.30058 3.38050 3.56080 3.58100 3.73487 3.89868 4.11619 4.39584 4.51326 4.58445 4.70467 4.75580 4.83419 4.87004 4.94883 4.99391 5.01338 5.09649 5.16807 5.17315 5.27302 5.29366 5.32839 5.37948 5.43652 5.47081 5.51184 5.63255 5.69568 5.81701 5.94159 5.96777 6.00307 6.11656 6.19855 6.36874 6.66917 6.79271 6.89041 6.93801 7.63841 7.93236 8.01186 8.49060 8.62749 9.24473 10.87279 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.003184 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.214456 B = 8790.817867 C = 9470.440170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.623 5.623 3 C 0.106 3.894 4 C -0.130 4.130 5 C 0.054 3.946 6 H 0.078 0.922 7 N -0.511 5.511 8 C 0.047 3.953 9 C -0.134 4.134 10 C 0.112 3.888 11 N -0.600 5.600 12 C 0.533 3.467 13 O -0.524 6.524 14 C -0.119 4.119 15 S -0.146 6.146 16 C -0.518 4.518 17 H 0.087 0.913 18 C 0.095 3.905 19 N -0.882 5.882 20 Si 0.856 3.144 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.235 1.235 24 C 0.124 3.876 25 C 0.042 3.958 26 C 0.529 3.471 27 O -0.516 6.516 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.031 0.969 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 15.176 24.742 29.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.359 5.359 3 C -0.018 4.018 4 C -0.168 4.168 5 C -0.058 4.058 6 H 0.096 0.904 7 N -0.236 5.236 8 C -0.080 4.080 9 C -0.174 4.174 10 C -0.013 4.013 11 N -0.335 5.335 12 C 0.321 3.679 13 O -0.400 6.400 14 C -0.270 4.270 15 S 0.080 5.920 16 C -0.666 4.666 17 H 0.105 0.895 18 C -0.113 4.113 19 N -0.519 5.519 20 Si 0.681 3.319 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.159 1.159 24 C 0.001 3.999 25 C -0.088 4.088 26 C 0.316 3.684 27 O -0.391 6.391 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.049 0.951 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.876 16.021 23.291 28.533 hybrid contribution 0.226 -0.920 0.901 1.307 sum 4.103 15.101 24.191 28.811 Atomic orbital electron populations 1.21577 0.77729 1.04004 1.01477 1.48044 1.06649 1.07235 1.73930 1.22062 0.90359 0.87587 1.01774 1.22811 0.96452 0.93356 1.04192 1.22285 0.93098 0.94351 0.96068 0.90430 1.60782 1.15324 1.02537 1.44995 1.21234 1.02295 0.86774 0.97651 1.21397 0.99408 0.98499 0.98049 1.21616 0.97458 0.85949 0.96268 1.47472 1.62643 1.07774 1.15566 1.20258 0.76304 0.90545 0.80831 1.90652 1.54931 1.32787 1.61611 1.23336 1.03798 0.97909 1.01948 1.84730 1.79214 1.15967 1.12048 1.22329 1.46715 0.92175 1.05334 0.89450 1.24708 0.93642 0.95888 0.97080 1.69943 1.40080 1.20553 1.21333 0.86735 0.78737 0.84307 0.82085 1.19260 1.20035 1.15924 1.21789 0.97705 0.87570 0.92826 1.22501 0.88580 1.00712 0.96965 1.20571 0.88662 0.84428 0.74784 1.90674 1.78006 1.20825 1.49615 0.89779 0.92162 0.91798 0.89963 0.91039 0.88277 0.89086 0.95057 0.88858 0.90140 0.90384 0.91181 0.89833 0.88817 0.88536 0.92033 0.92046 0.89034 0.89924 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.14 59.85 0.67 1.42 16 2 N -0.62 -5.93 3.33 -180.28 -0.60 -6.53 16 3 C 0.11 0.63 7.35 -3.12 -0.02 0.61 16 4 C -0.13 -0.83 5.18 -25.10 -0.13 -0.96 16 5 C 0.05 0.49 2.56 -67.72 -0.17 0.31 16 6 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 7 N -0.51 -5.55 4.00 -231.60 -0.93 -6.48 16 8 C 0.05 0.53 4.65 -6.80 -0.03 0.50 16 9 C -0.13 -1.64 5.95 -28.34 -0.17 -1.81 16 10 C 0.11 1.31 5.23 -3.99 -0.02 1.29 16 11 N -0.60 -8.61 2.53 -172.21 -0.44 -9.05 16 12 C 0.53 10.22 7.65 -10.99 -0.08 10.14 16 13 O -0.52 -11.81 15.14 5.56 0.08 -11.73 16 14 C -0.12 -2.49 4.62 36.01 0.17 -2.32 16 15 S -0.15 -3.86 18.55 -107.50 -1.99 -5.86 16 16 C -0.52 -15.39 10.04 30.94 0.31 -15.08 16 17 H 0.09 2.71 8.03 -52.49 -0.42 2.28 16 18 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 19 N -0.88 -27.24 13.97 55.49 0.78 -26.46 16 20 Si 0.86 22.37 27.74 -169.99 -4.72 17.66 16 21 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.24 -6.16 6.74 56.52 0.38 -5.78 16 24 C 0.12 1.44 6.46 -2.80 -0.02 1.42 16 25 C 0.04 0.36 5.17 -4.44 -0.02 0.34 16 26 C 0.53 6.43 7.56 -10.86 -0.08 6.34 16 27 O -0.52 -8.19 14.76 5.56 0.08 -8.11 16 28 H 0.08 0.82 7.53 -51.93 -0.39 0.42 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.81 7.95 -51.93 -0.41 0.40 16 34 H 0.09 0.32 7.86 -51.93 -0.41 -0.09 16 35 H 0.03 0.29 7.18 -51.93 -0.37 -0.08 16 36 H 0.09 1.21 5.16 -51.93 -0.27 0.94 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.22 7.42 -51.93 -0.39 0.84 16 39 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 40 H 0.08 1.01 6.18 -51.93 -0.32 0.69 16 41 H 0.09 1.81 7.30 -51.91 -0.38 1.43 16 42 H 0.10 1.96 7.26 -51.92 -0.38 1.58 16 43 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 45 H 0.09 1.24 6.97 -51.93 -0.36 0.88 16 46 H 0.08 0.52 6.05 -51.93 -0.31 0.21 16 47 H 0.05 0.36 7.14 -51.93 -0.37 -0.01 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -37.82 375.46 -9.10 -46.92 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.32 Total: -1.01 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 0.29 Total: 4.98 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -1.19 Total: -48.52 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.17 Total: -19.83 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.72 Total: 17.66 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -1.99 Total: -5.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.82 -9.10 -46.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194919676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.991 kcal (2) G-P(sol) polarization free energy of solvation -37.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds