Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46764 * 124.35282 * 2 1 4 4 C 1.54484 * 105.47181 * 196.99816 * 3 2 1 5 5 C 1.54624 * 101.76286 * 334.58202 * 4 3 2 6 6 H 1.09000 * 110.48926 * 266.12016 * 5 4 3 7 7 N 1.46906 * 110.48026 * 143.48053 * 5 4 3 8 8 C 1.46265 * 110.99700 * 178.76917 * 7 5 4 9 9 C 1.47545 * 114.37223 * 148.55133 * 8 7 5 10 10 C 1.54945 * 109.73315 * 62.22440 * 9 8 7 11 11 N 1.44682 * 109.51842 * 290.51558 * 10 9 8 12 12 C 1.34770 * 118.55182 * 269.10035 * 11 10 9 13 13 O 1.21282 * 120.00148 * 180.02562 * 12 11 10 14 14 C 1.50699 * 119.99978 * 0.02562 * 12 11 10 15 15 S 1.80996 * 109.47318 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00179 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00215 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00119 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00021 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99698 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46767 * 90.00151 * 20 18 16 22 22 H 1.48498 * 109.46656 * 209.99605 * 20 18 16 23 23 H 1.48496 * 109.47001 * 329.99798 * 20 18 16 24 24 C 1.47783 * 122.90045 * 89.08115 * 11 10 9 25 25 C 1.44760 * 111.00282 * 55.28336 * 7 5 4 26 26 C 1.34424 * 124.34411 * 179.97438 * 2 1 3 27 27 O 1.21279 * 124.94294 * 359.34446 * 26 2 1 28 28 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46709 * 299.99882 * 1 2 3 30 30 H 1.08997 * 109.47129 * 59.99665 * 1 2 3 31 31 H 1.09002 * 110.24057 * 315.99681 * 3 2 1 32 32 H 1.08999 * 110.24100 * 77.90950 * 3 2 1 33 33 H 1.09000 * 110.96838 * 92.70823 * 4 3 2 34 34 H 1.09000 * 110.96325 * 216.42866 * 4 3 2 35 35 H 1.08995 * 108.50778 * 269.81962 * 8 7 5 36 36 H 1.09003 * 108.50211 * 27.44699 * 8 7 5 37 37 H 1.09006 * 109.42218 * 182.30213 * 9 8 7 38 38 H 1.08999 * 109.43034 * 302.13500 * 9 8 7 39 39 H 1.08995 * 109.46348 * 50.53324 * 10 9 8 40 40 H 1.09002 * 109.46157 * 170.50946 * 10 9 8 41 41 H 1.09004 * 109.47242 * 299.99984 * 14 12 11 42 42 H 1.08995 * 109.47554 * 59.99494 * 14 12 11 43 43 H 0.97000 * 120.00190 * 180.02562 * 19 18 16 44 44 H 1.09011 * 109.06249 * 78.64409 * 24 11 10 45 45 H 1.08996 * 109.06340 * 197.63791 * 24 11 10 46 46 H 1.09003 * 109.43316 * 337.91799 * 25 7 5 47 47 H 1.08993 * 109.43758 * 97.78866 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7012 0.7484 -0.4353 5 6 3.6897 -0.7379 -0.0093 6 1 4.1191 -0.8530 0.9859 7 7 4.4216 -1.5577 -0.9843 8 6 4.4427 -2.9624 -0.5772 9 6 4.4616 -3.9211 -1.6985 10 6 5.7518 -3.7240 -2.5336 11 7 5.6841 -2.4614 -3.2370 12 6 5.1578 -2.4426 -4.4775 13 8 5.0887 -1.3988 -5.0912 14 6 4.6551 -3.7186 -5.1022 15 16 4.0122 -3.3676 -6.7574 16 6 3.5082 -4.9857 -7.2393 17 1 3.6435 -5.8172 -6.5636 18 6 2.9363 -5.1917 -8.4872 19 7 2.5594 -6.4004 -8.8471 20 14 2.7016 -3.7533 -9.6559 21 1 3.9086 -3.6064 -10.5085 22 1 1.5161 -4.0019 -10.5148 23 1 2.4938 -2.5086 -8.8733 24 6 6.1663 -1.1915 -2.6551 25 6 5.7682 -1.0609 -1.1729 26 6 2.2234 -1.1099 0.0005 27 8 1.7945 -2.2442 0.0124 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8987 1.9381 -0.7105 32 1 2.3292 1.6439 1.0000 33 1 3.8274 0.8444 -1.5137 34 1 4.4754 1.3013 0.0968 35 1 5.3269 -3.1313 0.0373 36 1 3.5587 -3.1601 0.0291 37 1 4.4352 -4.9379 -1.3066 38 1 3.5905 -3.7550 -2.3323 39 1 6.6170 -3.7246 -1.8708 40 1 5.8457 -4.5364 -3.2542 41 1 5.4736 -4.4349 -5.1743 42 1 3.8599 -4.1366 -4.4851 43 1 2.1600 -6.5444 -9.7192 44 1 7.2527 -1.1523 -2.7366 45 1 5.7375 -0.3589 -3.2127 46 1 5.8130 -0.0130 -0.8763 47 1 6.4579 -1.6406 -0.5595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194919676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = -64.961975 kcal Electronic energy + Delta-G solvation = -28784.361467 eV Core-core repulsion = 24900.076112 eV Total energy + Delta-G solvation = -3884.285356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.91473 -40.98042 -38.90362 -37.55301 -36.26821 -34.68882 -33.91643 -32.92700 -31.10694 -29.24318 -27.93729 -27.77778 -27.35876 -26.21367 -23.67428 -22.40841 -21.74194 -20.47332 -20.34624 -19.43897 -18.32788 -17.96437 -17.65992 -17.35784 -17.09819 -16.85037 -16.42338 -16.09295 -15.94752 -15.56050 -15.18108 -14.93584 -14.82591 -14.69413 -14.66050 -14.28658 -14.02895 -13.70915 -13.63766 -13.38372 -13.35149 -13.25288 -13.11693 -13.01064 -12.85578 -12.61717 -12.44794 -12.38873 -11.98154 -11.88044 -11.78982 -11.64455 -11.18177 -10.84356 -10.62491 -10.53986 -9.73893 -9.57752 -9.29980 -9.00904 -8.52936 -6.23839 0.97838 1.29564 1.43930 1.45686 1.53882 1.61228 2.04632 2.17252 2.24596 2.67959 2.84979 2.89053 3.25694 3.56458 3.62843 3.89314 3.98333 4.01786 4.03591 4.07428 4.17173 4.24427 4.32779 4.38304 4.41326 4.44242 4.55725 4.59810 4.63336 4.67934 4.73937 4.81097 4.83889 4.87842 4.93218 5.00871 5.11272 5.17003 5.33700 5.54583 5.68036 5.69374 6.01267 6.09204 6.09938 6.22647 6.33358 6.91892 7.11661 7.18571 8.59883 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.003184 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.214456 B = 8790.817867 C = 9470.440170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.627 5.627 3 C 0.102 3.898 4 C -0.121 4.121 5 C 0.058 3.942 6 H 0.101 0.899 7 N -0.540 5.540 8 C 0.051 3.949 9 C -0.130 4.130 10 C 0.108 3.892 11 N -0.584 5.584 12 C 0.531 3.469 13 O -0.565 6.565 14 C -0.105 4.105 15 S -0.175 6.175 16 C -0.530 4.530 17 H 0.058 0.942 18 C 0.046 3.954 19 N -0.917 5.917 20 Si 0.916 3.084 21 H -0.259 1.259 22 H -0.257 1.257 23 H -0.239 1.239 24 C 0.117 3.883 25 C 0.050 3.950 26 C 0.508 3.492 27 O -0.571 6.571 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.032 0.968 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.277 0.723 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.113 0.887 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.617 17.756 26.878 32.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.361 5.361 3 C -0.020 4.020 4 C -0.159 4.159 5 C -0.053 4.053 6 H 0.119 0.881 7 N -0.265 5.265 8 C -0.076 4.076 9 C -0.169 4.169 10 C -0.015 4.015 11 N -0.316 5.316 12 C 0.318 3.682 13 O -0.444 6.444 14 C -0.256 4.256 15 S 0.052 5.948 16 C -0.677 4.677 17 H 0.077 0.923 18 C -0.159 4.159 19 N -0.555 5.555 20 Si 0.738 3.262 21 H -0.183 1.183 22 H -0.181 1.181 23 H -0.163 1.163 24 C -0.005 4.005 25 C -0.079 4.079 26 C 0.295 3.705 27 O -0.450 6.450 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.051 0.949 39 H 0.129 0.871 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.131 0.869 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.894 18.628 25.477 32.107 hybrid contribution -0.401 -1.753 0.398 1.842 sum 5.493 16.876 25.876 31.377 Atomic orbital electron populations 1.21658 0.77549 1.02844 1.03186 1.48340 1.07307 1.08003 1.72472 1.22360 0.89568 0.86250 1.03853 1.22868 0.97851 0.91756 1.03432 1.22353 0.90672 0.95384 0.96877 0.88141 1.60646 1.16891 1.02569 1.46418 1.21127 1.02531 0.87070 0.96882 1.21356 0.97627 0.99994 0.97898 1.21837 0.98696 0.84501 0.96491 1.47523 1.60341 1.09960 1.13803 1.19934 0.76861 0.88959 0.82441 1.90631 1.57167 1.33506 1.63127 1.23300 1.04097 0.99794 0.98363 1.84589 1.79827 1.14046 1.16342 1.22450 1.46977 0.93034 1.05258 0.92348 1.25582 0.93242 0.98482 0.98641 1.70018 1.40818 1.22413 1.22296 0.85847 0.79580 0.80747 0.80069 1.18297 1.18126 1.16334 1.22115 0.98916 0.84961 0.94472 1.22506 0.87711 1.02945 0.94705 1.21350 0.90603 0.84234 0.74281 1.90638 1.79207 1.22945 1.52195 0.92400 0.89349 0.91114 0.89059 0.87968 0.90297 0.85030 0.92174 0.91058 0.88744 0.94907 0.87127 0.90415 0.87318 0.88596 0.91311 0.89528 0.91354 0.86940 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.42 11.14 127.77 1.42 2.85 16 2 N -0.63 -11.35 3.33 -842.88 -2.81 -14.16 16 3 C 0.10 0.92 7.35 86.83 0.64 1.55 16 4 C -0.12 -1.12 5.18 31.65 0.16 -0.95 16 5 C 0.06 0.92 2.56 44.91 0.11 1.03 16 6 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 7 N -0.54 -10.59 4.00 -886.65 -3.55 -14.14 16 8 C 0.05 1.06 4.65 84.72 0.39 1.46 16 9 C -0.13 -3.11 5.95 29.55 0.18 -2.93 16 10 C 0.11 2.33 5.23 87.38 0.46 2.79 16 11 N -0.58 -15.91 2.53 -817.15 -2.07 -17.99 16 12 C 0.53 20.43 7.65 87.66 0.67 21.10 16 13 O -0.57 -25.74 15.14 -3.04 -0.05 -25.78 16 14 C -0.10 -4.46 4.62 71.24 0.33 -4.13 16 15 S -0.17 -9.44 18.55 -56.49 -1.05 -10.48 16 16 C -0.53 -32.47 10.04 67.96 0.68 -31.79 16 17 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 18 C 0.05 2.79 5.50 84.86 0.47 3.26 16 19 N -0.92 -57.69 13.97 21.65 0.30 -57.39 16 20 Si 0.92 46.65 27.74 68.60 1.90 48.56 16 21 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.24 -12.28 6.74 99.48 0.67 -11.61 16 24 C 0.12 2.40 6.46 86.48 0.56 2.95 16 25 C 0.05 0.65 5.17 87.05 0.45 1.10 16 26 C 0.51 12.28 7.56 87.90 0.66 12.95 16 27 O -0.57 -19.15 14.76 -3.02 -0.04 -19.19 16 28 H 0.06 1.22 7.53 -2.39 -0.02 1.20 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.08 1.10 7.95 -2.39 -0.02 1.08 16 34 H 0.13 0.17 7.86 -2.39 -0.02 0.15 16 35 H 0.06 0.90 7.18 -2.39 -0.02 0.88 16 36 H 0.07 1.86 5.16 -2.39 -0.01 1.85 16 37 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.03 1.08 7.42 -2.39 -0.02 1.06 16 39 H 0.11 1.59 8.09 -2.39 -0.02 1.57 16 40 H 0.08 1.79 6.18 -2.39 -0.01 1.78 16 41 H 0.11 4.25 7.30 -2.39 -0.02 4.24 16 42 H 0.10 4.07 7.26 -2.40 -0.02 4.06 16 43 H 0.28 16.06 8.31 -92.71 -0.77 15.29 16 44 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.07 1.76 6.97 -2.39 -0.02 1.74 16 46 H 0.11 0.84 6.05 -2.39 -0.01 0.83 16 47 H 0.07 0.66 7.14 -2.39 -0.02 0.64 16 Total: -1.00 -87.77 375.46 0.76 -87.01 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.93 Total: 12.31 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 7.19 Total: 11.25 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -8.13 Total: -103.67 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -0.09 Total: -44.97 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.90 Total: 48.56 kcal Atomic # 16 Polarization: -9.44 SS G_CDS: -1.05 Total: -10.48 kcal Total: -87.77 0.76 -87.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194919676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.047 kcal (2) G-P(sol) polarization free energy of solvation -87.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds