Wall clock time and date at job start Sat Apr 11 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34946 * 126.03587 * 2 1 4 4 C 1.35319 * 107.74495 * 180.13858 * 3 2 1 5 5 C 1.50708 * 126.04012 * 179.87071 * 4 3 2 6 6 H 1.09000 * 109.33144 * 19.38327 * 5 4 3 7 7 C 1.55040 * 109.33278 * 259.71619 * 5 4 3 8 8 S 1.79477 * 109.76474 * 167.22036 * 7 5 4 9 9 O 1.42105 * 108.00034 * 333.18199 * 8 7 5 10 10 O 1.42095 * 107.92436 * 203.69306 * 8 7 5 11 11 C 1.82313 * 105.44145 * 88.45550 * 8 7 5 12 12 C 1.54461 * 110.35516 * 319.41507 * 11 8 7 13 13 C 1.51875 * 108.98801 * 320.98971 * 12 11 8 14 14 N 1.39173 * 109.33361 * 138.88955 * 5 4 3 15 15 C 1.46906 * 111.00204 * 313.41798 * 14 5 4 16 16 C 1.52995 * 109.47250 * 163.91581 * 15 14 5 17 17 C 1.52998 * 109.47254 * 185.30546 * 16 15 14 18 18 C 1.50698 * 109.47275 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99874 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99925 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00260 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99796 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46866 * 90.00574 * 22 20 18 24 24 H 1.48502 * 109.47280 * 210.00059 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00484 * 22 20 18 26 26 C 1.39865 * 107.92274 * 359.60694 * 4 3 2 27 27 N 1.30838 * 108.19991 * 0.23967 * 26 4 3 28 28 H 1.08993 * 109.47782 * 270.31589 * 1 2 3 29 29 H 1.09007 * 109.46958 * 30.32190 * 1 2 3 30 30 H 1.09008 * 109.47138 * 150.31308 * 1 2 3 31 31 H 1.08003 * 126.13153 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.42091 * 47.12857 * 7 5 4 33 33 H 1.08993 * 109.42048 * 287.30783 * 7 5 4 34 34 H 1.09004 * 109.32126 * 199.14472 * 11 8 7 35 35 H 1.09002 * 109.32685 * 79.68863 * 11 8 7 36 36 H 1.08994 * 109.57162 * 80.87296 * 12 11 8 37 37 H 1.09000 * 109.56862 * 201.11040 * 12 11 8 38 38 H 1.08997 * 110.43804 * 224.94646 * 13 12 11 39 39 H 1.09000 * 110.43309 * 347.49608 * 13 12 11 40 40 H 1.09001 * 109.46920 * 283.91912 * 15 14 5 41 41 H 1.09000 * 109.46469 * 43.91043 * 15 14 5 42 42 H 1.08999 * 109.46776 * 305.30392 * 16 15 14 43 43 H 1.08997 * 109.47211 * 65.30031 * 16 15 14 44 44 H 1.09003 * 109.46974 * 300.00146 * 17 16 15 45 45 H 1.08997 * 109.47433 * 59.99620 * 17 16 15 46 46 H 0.96998 * 120.00321 * 180.02562 * 21 20 18 47 47 H 1.07995 * 125.90170 * 180.21561 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5436 0.6666 -0.0031 5 6 4.7680 1.5453 -0.0070 6 1 4.4963 2.5442 0.3344 7 6 5.3334 1.6314 -1.4481 8 16 6.5476 2.9495 -1.5459 9 8 6.2301 3.9137 -0.5514 10 8 6.6299 3.3685 -2.9012 11 6 8.1377 2.1791 -1.0966 12 6 7.9450 1.1951 0.0783 13 6 6.9522 1.7889 1.0624 14 7 5.7215 1.0108 0.8543 15 6 5.1174 0.6317 2.1386 16 6 6.0683 -0.2982 2.8948 17 6 5.3861 -0.7982 4.1697 18 6 6.3225 -1.7147 4.9142 19 1 7.3057 -1.9202 4.5176 20 6 5.9239 -2.2907 6.1018 21 7 4.7264 -2.0408 6.5846 22 14 7.0844 -3.4272 7.0243 23 1 7.9055 -2.6325 7.9728 24 1 6.2956 -4.4353 7.7771 25 1 7.9748 -4.1172 6.0567 26 6 3.5347 -0.7320 0.0040 27 7 2.2891 -1.1327 0.0060 28 1 -0.3634 0.0057 1.0275 29 1 -0.3633 0.8871 -0.5189 30 1 -0.3634 -0.8928 -0.5090 31 1 1.9281 2.1194 -0.0004 32 1 4.5204 1.8351 -2.1448 33 1 5.8049 0.6842 -1.7095 34 1 8.8449 2.9555 -0.8046 35 1 8.5333 1.6399 -1.9574 36 1 7.5625 0.2467 -0.2987 37 1 8.9000 1.0310 0.5775 38 1 7.3125 1.6712 2.0843 39 1 6.7768 2.8410 0.8379 40 1 4.9357 1.5271 2.7330 41 1 4.1733 0.1176 1.9583 42 1 6.3245 -1.1482 2.2624 43 1 6.9757 0.2456 3.1576 44 1 5.1298 0.0518 4.8020 45 1 4.4787 -1.3420 3.9069 46 1 4.4462 -2.4457 7.4203 47 1 4.4054 -1.3709 0.0070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197808990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:42 Heat of formation + Delta-G solvation = 34.033383 kcal Electronic energy + Delta-G solvation = -29025.051145 eV Core-core repulsion = 25145.058550 eV Total energy + Delta-G solvation = -3879.992595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45863 -39.18780 -37.00575 -36.19439 -34.37614 -34.15496 -32.87636 -32.25013 -30.36892 -29.51475 -27.46223 -26.43194 -25.90217 -23.24512 -22.56638 -21.53198 -20.88181 -20.00337 -19.70608 -18.81458 -17.41082 -16.93658 -16.56647 -16.24072 -15.89602 -15.70202 -15.30162 -14.91851 -14.43745 -14.31274 -14.23283 -14.10539 -13.80741 -13.53857 -13.02721 -12.99375 -12.76530 -12.64867 -12.44549 -12.29658 -12.23668 -12.17994 -11.99872 -11.63419 -11.30778 -11.19804 -11.01515 -10.83531 -10.79191 -10.52993 -10.49182 -10.42300 -10.31779 -9.60044 -9.34295 -9.31475 -9.03529 -8.32410 -8.30788 -8.01772 -5.96919 -3.98822 -0.15872 1.88443 2.51963 2.63452 2.81028 3.33194 3.39585 3.42604 3.45267 3.75948 3.90760 4.39878 4.44607 4.47287 4.49234 4.72156 4.77490 4.81942 4.99500 5.02374 5.07723 5.24644 5.27890 5.30346 5.35002 5.39164 5.51665 5.59776 5.69794 5.81632 5.83780 5.95623 6.05440 6.08377 6.19544 6.40909 6.68020 6.73623 6.82197 6.96247 7.17241 7.32171 7.56924 7.72266 7.76375 7.87879 8.04055 8.46808 9.08692 9.65077 11.14511 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009798 B = 0.003808 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.077002 B = 7351.607080 C = 9660.977173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.057 3.943 4 C -0.226 4.226 5 C 0.214 3.786 6 H 0.057 0.943 7 C -0.609 4.609 8 S 2.415 3.585 9 O -0.942 6.942 10 O -0.957 6.957 11 C -0.601 4.601 12 C -0.099 4.099 13 C -0.002 4.002 14 N -0.568 5.568 15 C 0.060 3.940 16 C -0.104 4.104 17 C 0.023 3.977 18 C -0.516 4.516 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.082 3.918 27 N -0.296 5.296 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.172 0.828 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.031 0.969 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.012 0.988 45 H 0.014 0.986 46 H 0.259 0.741 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 9.008 -18.492 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.090 4.090 4 C -0.239 4.239 5 C 0.101 3.899 6 H 0.075 0.925 7 C -0.740 4.740 8 S 2.601 3.399 9 O -0.939 6.939 10 O -0.954 6.954 11 C -0.731 4.731 12 C -0.138 4.138 13 C -0.129 4.129 14 N -0.292 5.292 15 C -0.066 4.066 16 C -0.142 4.142 17 C -0.015 4.015 18 C -0.555 4.555 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.718 3.282 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.105 4.105 27 N -0.117 5.117 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.189 0.811 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.033 0.967 46 H 0.069 0.931 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.111 8.468 -18.823 20.874 hybrid contribution 1.004 -0.049 1.098 1.489 sum -2.107 8.419 -17.725 19.736 Atomic orbital electron populations 1.21821 0.74370 1.04137 1.03493 1.48418 1.06566 1.03838 1.57275 1.22241 0.90811 0.93474 1.02459 1.19655 0.92863 0.94197 1.17183 1.17929 0.88381 0.95975 0.87592 0.92526 1.30702 1.16743 1.20253 1.06339 1.07976 0.79071 0.78119 0.74784 1.93502 1.83333 1.56920 1.60117 1.93546 1.86541 1.80071 1.35210 1.30644 1.21008 1.12262 1.09221 1.21744 1.01241 0.97897 0.92955 1.23060 0.89345 0.97833 1.02611 1.58078 1.07786 1.47961 1.15387 1.22409 0.99210 0.98567 0.86396 1.21692 0.97336 0.97412 0.97753 1.19044 0.95816 0.95783 0.90829 1.21236 1.00718 1.27519 1.06014 0.92725 1.25017 0.95104 0.96778 0.97563 1.69965 1.18438 1.44537 1.20625 0.86631 0.80901 0.80713 0.79954 1.20751 1.21314 1.19875 1.23789 0.94988 0.94283 0.97403 1.77455 1.01784 1.07879 1.24540 0.90668 0.89740 0.89395 0.81093 0.84280 0.83852 0.85024 0.85242 0.88326 0.89799 0.87718 0.89139 0.95099 0.89939 0.92550 0.93528 0.96988 0.96738 0.93110 0.79561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 11.47 59.84 0.69 1.49 16 2 N -0.38 -4.58 4.01 -68.16 -0.27 -4.86 16 3 C 0.06 0.64 11.40 -17.22 -0.20 0.44 16 4 C -0.23 -2.79 3.41 -105.05 -0.36 -3.15 16 5 C 0.21 2.45 2.02 -71.75 -0.14 2.31 16 6 H 0.06 0.68 7.20 -51.93 -0.37 0.31 16 7 C -0.61 -5.38 5.22 38.24 0.20 -5.18 16 8 S 2.42 23.62 4.92 -107.50 -0.53 23.09 16 9 O -0.94 -12.06 14.12 -57.91 -0.82 -12.87 16 10 O -0.96 -12.35 18.06 -57.91 -1.05 -13.39 16 11 C -0.60 -4.48 6.54 37.92 0.25 -4.23 16 12 C -0.10 -0.89 5.69 -26.54 -0.15 -1.04 16 13 C 0.00 -0.02 5.27 -4.30 -0.02 -0.04 16 14 N -0.57 -7.13 3.04 -232.94 -0.71 -7.84 16 15 C 0.06 0.97 4.41 -3.82 -0.02 0.96 16 16 C -0.10 -2.01 5.00 -26.73 -0.13 -2.15 16 17 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 22 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.08 1.15 9.98 -17.37 -0.17 0.97 16 27 N -0.30 -4.45 12.58 30.62 0.39 -4.06 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 31 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.14 1.07 8.09 -51.79 -0.42 0.65 16 33 H 0.14 1.00 7.73 -51.79 -0.40 0.60 16 34 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.84 7.31 -51.93 -0.38 0.46 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.32 5.96 -51.93 -0.31 1.01 16 39 H 0.09 1.05 4.21 -51.88 -0.22 0.84 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 1.43 4.88 -51.93 -0.25 1.18 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.87 6.47 -51.93 -0.34 0.54 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -37.22 376.27 -9.52 -46.75 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.30 Total: -0.35 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -0.61 Total: -22.44 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.14 Total: -43.06 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.86 Total: -26.27 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 23.62 SS G_CDS: -0.53 Total: 23.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.22 -9.52 -46.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197808990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.779 kcal (2) G-P(sol) polarization free energy of solvation -37.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds