Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34946 * 126.03587 * 2 1 4 4 C 1.35319 * 107.74495 * 180.13858 * 3 2 1 5 5 C 1.50708 * 126.04012 * 179.87071 * 4 3 2 6 6 H 1.09000 * 109.33144 * 19.38327 * 5 4 3 7 7 C 1.55040 * 109.33278 * 259.71619 * 5 4 3 8 8 S 1.79477 * 109.76474 * 167.22036 * 7 5 4 9 9 O 1.42105 * 108.00034 * 333.18199 * 8 7 5 10 10 O 1.42095 * 107.92436 * 203.69306 * 8 7 5 11 11 C 1.82313 * 105.44145 * 88.45550 * 8 7 5 12 12 C 1.54461 * 110.35516 * 319.41507 * 11 8 7 13 13 C 1.51875 * 108.98801 * 320.98971 * 12 11 8 14 14 N 1.39173 * 109.33361 * 138.88955 * 5 4 3 15 15 C 1.46906 * 111.00204 * 313.41798 * 14 5 4 16 16 C 1.52995 * 109.47250 * 163.91581 * 15 14 5 17 17 C 1.52998 * 109.47254 * 185.30546 * 16 15 14 18 18 C 1.50698 * 109.47275 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99874 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99925 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00260 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99796 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46866 * 90.00574 * 22 20 18 24 24 H 1.48502 * 109.47280 * 210.00059 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00484 * 22 20 18 26 26 C 1.39865 * 107.92274 * 359.60694 * 4 3 2 27 27 N 1.30838 * 108.19991 * 0.23967 * 26 4 3 28 28 H 1.08993 * 109.47782 * 270.31589 * 1 2 3 29 29 H 1.09007 * 109.46958 * 30.32190 * 1 2 3 30 30 H 1.09008 * 109.47138 * 150.31308 * 1 2 3 31 31 H 1.08003 * 126.13153 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.42091 * 47.12857 * 7 5 4 33 33 H 1.08993 * 109.42048 * 287.30783 * 7 5 4 34 34 H 1.09004 * 109.32126 * 199.14472 * 11 8 7 35 35 H 1.09002 * 109.32685 * 79.68863 * 11 8 7 36 36 H 1.08994 * 109.57162 * 80.87296 * 12 11 8 37 37 H 1.09000 * 109.56862 * 201.11040 * 12 11 8 38 38 H 1.08997 * 110.43804 * 224.94646 * 13 12 11 39 39 H 1.09000 * 110.43309 * 347.49608 * 13 12 11 40 40 H 1.09001 * 109.46920 * 283.91912 * 15 14 5 41 41 H 1.09000 * 109.46469 * 43.91043 * 15 14 5 42 42 H 1.08999 * 109.46776 * 305.30392 * 16 15 14 43 43 H 1.08997 * 109.47211 * 65.30031 * 16 15 14 44 44 H 1.09003 * 109.46974 * 300.00146 * 17 16 15 45 45 H 1.08997 * 109.47433 * 59.99620 * 17 16 15 46 46 H 0.96998 * 120.00321 * 180.02562 * 21 20 18 47 47 H 1.07995 * 125.90170 * 180.21561 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5436 0.6666 -0.0031 5 6 4.7680 1.5453 -0.0070 6 1 4.4963 2.5442 0.3344 7 6 5.3334 1.6314 -1.4481 8 16 6.5476 2.9495 -1.5459 9 8 6.2301 3.9137 -0.5514 10 8 6.6299 3.3685 -2.9012 11 6 8.1377 2.1791 -1.0966 12 6 7.9450 1.1951 0.0783 13 6 6.9522 1.7889 1.0624 14 7 5.7215 1.0108 0.8543 15 6 5.1174 0.6317 2.1386 16 6 6.0683 -0.2982 2.8948 17 6 5.3861 -0.7982 4.1697 18 6 6.3225 -1.7147 4.9142 19 1 7.3057 -1.9202 4.5176 20 6 5.9239 -2.2907 6.1018 21 7 4.7264 -2.0408 6.5846 22 14 7.0844 -3.4272 7.0243 23 1 7.9055 -2.6325 7.9728 24 1 6.2956 -4.4353 7.7771 25 1 7.9748 -4.1172 6.0567 26 6 3.5347 -0.7320 0.0040 27 7 2.2891 -1.1327 0.0060 28 1 -0.3634 0.0057 1.0275 29 1 -0.3633 0.8871 -0.5189 30 1 -0.3634 -0.8928 -0.5090 31 1 1.9281 2.1194 -0.0004 32 1 4.5204 1.8351 -2.1448 33 1 5.8049 0.6842 -1.7095 34 1 8.8449 2.9555 -0.8046 35 1 8.5333 1.6399 -1.9574 36 1 7.5625 0.2467 -0.2987 37 1 8.9000 1.0310 0.5775 38 1 7.3125 1.6712 2.0843 39 1 6.7768 2.8410 0.8379 40 1 4.9357 1.5271 2.7330 41 1 4.1733 0.1176 1.9583 42 1 6.3245 -1.1482 2.2624 43 1 6.9757 0.2456 3.1576 44 1 5.1298 0.0518 4.8020 45 1 4.4787 -1.3420 3.9069 46 1 4.4462 -2.4457 7.4203 47 1 4.4054 -1.3709 0.0070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197808990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = 7.083053 kcal Electronic energy + Delta-G solvation = -29026.219799 eV Core-core repulsion = 25145.058550 eV Total energy + Delta-G solvation = -3881.161249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.40293 -40.17259 -37.90520 -37.06293 -35.95842 -35.14742 -34.07400 -33.61097 -31.71497 -30.46320 -28.45155 -27.80118 -26.90745 -24.75604 -23.61045 -22.57675 -21.82275 -21.54955 -20.70757 -19.59945 -18.54003 -18.18667 -17.71122 -17.36419 -16.75188 -16.66401 -16.51992 -16.15594 -15.87168 -15.64679 -15.17295 -14.96148 -14.61702 -14.47354 -14.30091 -13.93792 -13.77949 -13.67613 -13.49620 -13.44620 -13.25745 -13.18008 -12.99619 -12.98006 -12.81751 -12.54463 -12.44728 -12.19454 -11.92509 -11.85141 -11.67681 -11.42831 -11.37098 -11.26327 -11.05176 -11.02035 -10.51171 -10.31963 -9.24999 -9.08274 -8.16516 -6.26994 -0.90142 0.97358 1.41554 1.42875 1.53846 1.73079 1.80623 1.93779 2.43040 2.68356 2.87056 3.04995 3.17177 3.57577 3.68560 3.82693 3.98102 4.04293 4.07094 4.23563 4.32608 4.37059 4.40366 4.43923 4.46032 4.50776 4.64227 4.69986 4.75721 4.83818 4.85526 4.94629 4.99826 5.05269 5.15941 5.17950 5.26235 5.37236 5.47039 5.58819 5.70511 5.83471 5.92268 6.11330 6.15414 6.31014 6.55526 6.79424 6.91400 7.42386 8.95524 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009798 B = 0.003808 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.077002 B = 7351.607080 C = 9660.977173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.382 5.382 3 C 0.059 3.941 4 C -0.239 4.239 5 C 0.211 3.789 6 H 0.052 0.948 7 C -0.600 4.600 8 S 2.419 3.581 9 O -0.978 6.978 10 O -0.990 6.990 11 C -0.582 4.582 12 C -0.098 4.098 13 C -0.011 4.011 14 N -0.556 5.556 15 C 0.075 3.925 16 C -0.087 4.087 17 C 0.028 3.972 18 C -0.535 4.535 19 H 0.064 0.936 20 C -0.003 4.003 21 N -0.937 5.937 22 Si 0.963 3.037 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.260 1.260 26 C 0.071 3.929 27 N -0.340 5.340 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.205 0.795 32 H 0.153 0.847 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.018 0.982 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.055 0.945 44 H -0.017 1.017 45 H -0.018 1.018 46 H 0.261 0.739 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 8.973 -19.797 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.163 5.163 3 C -0.088 4.088 4 C -0.252 4.252 5 C 0.099 3.901 6 H 0.069 0.931 7 C -0.731 4.731 8 S 2.609 3.391 9 O -0.975 6.975 10 O -0.987 6.987 11 C -0.714 4.714 12 C -0.137 4.137 13 C -0.137 4.137 14 N -0.280 5.280 15 C -0.052 4.052 16 C -0.125 4.125 17 C -0.010 4.010 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.200 4.200 21 N -0.578 5.578 22 Si 0.787 3.213 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.184 1.184 26 C -0.115 4.115 27 N -0.161 5.161 28 H 0.094 0.906 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.222 0.778 32 H 0.171 0.829 33 H 0.184 0.816 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.036 0.964 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.001 0.999 45 H 0.001 0.999 46 H 0.070 0.930 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.530 8.460 -20.160 21.916 hybrid contribution 0.441 -0.022 1.531 1.593 sum -1.089 8.438 -18.629 20.480 Atomic orbital electron populations 1.22158 0.72236 1.06047 1.04168 1.48754 1.07859 1.03317 1.56412 1.22815 0.90507 0.94662 1.00822 1.19788 0.93765 0.93636 1.17984 1.17951 0.88069 0.95319 0.88783 0.93065 1.30593 1.17077 1.20881 1.04574 1.07688 0.79936 0.78085 0.73438 1.93456 1.84322 1.59025 1.60674 1.93506 1.87289 1.81138 1.36763 1.30487 1.18801 1.12394 1.09746 1.21716 1.00905 0.98291 0.92783 1.23199 0.89418 0.98101 1.02970 1.58071 1.08040 1.48610 1.13319 1.22036 0.98064 0.97194 0.87907 1.21425 0.97598 0.98177 0.95261 1.18937 0.94811 0.94149 0.93086 1.21708 1.01368 1.27752 1.06473 0.91812 1.25986 0.96777 0.98523 0.98710 1.70113 1.20549 1.45892 1.21205 0.85482 0.78692 0.78445 0.78639 1.19802 1.21160 1.18438 1.23867 0.94842 0.95148 0.97656 1.77359 1.02659 1.09910 1.26190 0.90583 0.86231 0.89149 0.77836 0.82947 0.81634 0.83484 0.82221 0.87492 0.88501 0.88957 0.89069 0.96381 0.91133 0.92067 0.92591 0.99855 0.99925 0.93017 0.79710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 11.47 127.77 1.47 2.82 16 2 N -0.38 -9.02 4.01 -369.57 -1.48 -10.50 16 3 C 0.06 1.27 11.40 83.54 0.95 2.22 16 4 C -0.24 -5.76 3.41 -20.14 -0.07 -5.83 16 5 C 0.21 4.61 2.02 46.26 0.09 4.71 16 6 H 0.05 1.20 7.20 -2.39 -0.02 1.18 16 7 C -0.60 -9.37 5.22 72.68 0.38 -8.99 16 8 S 2.42 42.89 4.92 -56.49 -0.28 42.61 16 9 O -0.98 -24.19 14.12 -127.30 -1.80 -25.99 16 10 O -0.99 -24.02 18.06 -127.30 -2.30 -26.32 16 11 C -0.58 -6.65 6.54 72.48 0.47 -6.17 16 12 C -0.10 -1.45 5.69 30.72 0.17 -1.27 16 13 C -0.01 -0.23 5.27 85.90 0.45 0.22 16 14 N -0.56 -13.47 3.04 -890.88 -2.71 -16.19 16 15 C 0.07 2.47 4.41 86.30 0.38 2.85 16 16 C -0.09 -3.39 5.00 30.59 0.15 -3.24 16 17 C 0.03 1.47 4.97 29.85 0.15 1.62 16 18 C -0.53 -30.28 9.11 25.60 0.23 -30.05 16 19 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 20 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 21 N -0.94 -57.91 13.29 21.45 0.28 -57.62 16 22 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 26 C 0.07 1.99 9.98 85.23 0.85 2.84 16 27 N -0.34 -10.37 12.58 -57.03 -0.72 -11.09 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.15 2.02 8.09 -2.48 -0.02 2.00 16 33 H 0.17 1.84 7.73 -2.48 -0.02 1.82 16 34 H 0.15 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.11 1.45 7.31 -2.39 -0.02 1.44 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 2.24 5.96 -2.39 -0.01 2.23 16 39 H 0.09 2.02 4.21 -2.42 -0.01 2.01 16 40 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 2.53 4.88 -2.39 -0.01 2.52 16 42 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.06 2.08 6.47 -2.39 -0.02 2.06 16 44 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 45 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 46 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 47 H 0.19 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -82.84 376.27 0.14 -82.70 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.96 Total: 14.01 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 6.15 Total: -37.97 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -4.63 Total: -95.40 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -4.10 Total: -52.31 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 42.89 SS G_CDS: -0.28 Total: 42.61 kcal Total: -82.84 0.14 -82.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197808990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.781 kcal (2) G-P(sol) polarization free energy of solvation -82.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds