Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46759 * 124.35159 * 2 1 4 4 C 1.54481 * 105.47539 * 197.04074 * 3 2 1 5 5 C 1.54630 * 101.76396 * 334.58561 * 4 3 2 6 6 H 1.09002 * 110.60150 * 266.06450 * 5 4 3 7 7 N 1.46901 * 110.48572 * 143.47336 * 5 4 3 8 8 C 1.46905 * 110.99870 * 158.77178 * 7 5 4 9 9 C 1.53039 * 109.45969 * 275.03075 * 8 7 5 10 10 C 1.53200 * 109.31115 * 178.60240 * 9 8 7 11 11 N 1.46923 * 108.76283 * 54.65170 * 10 9 8 12 12 C 1.34779 * 120.62616 * 126.36217 * 11 10 9 13 13 O 1.21283 * 120.00051 * 180.02562 * 12 11 10 14 14 C 1.50696 * 120.00087 * 0.02562 * 12 11 10 15 15 S 1.81005 * 109.47124 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00071 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00222 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99806 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00395 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99539 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46969 * 90.00285 * 20 18 16 22 22 H 1.48506 * 109.47103 * 209.99989 * 20 18 16 23 23 H 1.48496 * 109.47487 * 330.00485 * 20 18 16 24 24 C 1.46926 * 118.74465 * 306.38305 * 11 10 9 25 25 C 1.53036 * 109.45804 * 154.97348 * 8 7 5 26 26 C 1.34422 * 124.34541 * 180.02562 * 2 1 3 27 27 O 1.21283 * 124.94506 * 359.59595 * 26 2 1 28 28 H 1.09004 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46953 * 299.95008 * 1 2 3 30 30 H 1.08997 * 109.47425 * 59.94802 * 1 2 3 31 31 H 1.08993 * 110.24671 * 316.04475 * 3 2 1 32 32 H 1.08995 * 110.24411 * 77.95615 * 3 2 1 33 33 H 1.08998 * 110.96912 * 216.47329 * 4 3 2 34 34 H 1.08996 * 110.97000 * 92.70288 * 4 3 2 35 35 H 1.00901 * 111.00067 * 282.72353 * 7 5 4 36 36 H 1.09001 * 109.46097 * 35.00235 * 8 7 5 37 37 H 1.09000 * 109.49718 * 298.56236 * 9 8 7 38 38 H 1.08996 * 109.49979 * 58.65896 * 9 8 7 39 39 H 1.08997 * 109.59638 * 294.86812 * 10 9 8 40 40 H 1.08995 * 109.58321 * 174.43513 * 10 9 8 41 41 H 1.09004 * 109.47302 * 299.99850 * 14 12 11 42 42 H 1.08998 * 109.47342 * 59.99885 * 14 12 11 43 43 H 0.96997 * 120.00155 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.58247 * 293.82764 * 24 11 10 45 45 H 1.08989 * 109.58728 * 173.39540 * 24 11 10 46 46 H 1.08999 * 109.50120 * 301.33768 * 25 8 7 47 47 H 1.09001 * 109.49961 * 61.40528 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 -0.4363 5 6 3.6898 -0.7379 -0.0111 6 1 4.1203 -0.8556 0.9834 7 7 4.4210 -1.5572 -0.9869 8 6 4.8553 -2.8265 -0.3882 9 6 6.1865 -2.6187 0.3376 10 6 6.6188 -3.9357 0.9900 11 7 6.6496 -4.9847 -0.0383 12 6 7.7574 -5.7288 -0.2270 13 8 7.7706 -6.5914 -1.0794 14 6 8.9797 -5.4890 0.6212 15 16 10.2893 -6.6382 0.1308 16 6 11.5600 -6.1496 1.2495 17 1 11.3810 -5.3514 1.9546 18 6 12.7905 -6.7913 1.2252 19 7 13.0085 -7.7645 0.3661 20 14 14.1377 -6.2727 2.4107 21 1 14.0283 -7.0654 3.6617 22 1 15.4644 -6.5118 1.7877 23 1 13.9916 -4.8288 2.7253 24 6 5.4502 -5.2068 -0.8573 25 6 5.0309 -3.8755 -1.4886 26 6 2.2234 -1.1099 -0.0005 27 8 1.7945 -2.2443 0.0060 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5131 0.8905 30 1 -0.3634 0.5146 -0.8895 31 1 1.8982 1.9384 -0.7098 32 1 2.3298 1.6434 1.0001 33 1 4.4754 1.3008 0.0960 34 1 3.8264 0.8451 -1.5147 35 1 3.8643 -1.7188 -1.8128 36 1 4.1034 -3.1686 0.3230 37 1 6.9450 -2.3007 -0.3775 38 1 6.0667 -1.8546 1.1056 39 1 5.9070 -4.2087 1.7691 40 1 7.6119 -3.8198 1.4238 41 1 9.3239 -4.4642 0.4811 42 1 8.7310 -5.6485 1.6703 43 1 13.8685 -8.2126 0.3489 44 1 4.6432 -5.5833 -0.2287 45 1 5.6724 -5.9295 -1.6422 46 1 4.0885 -4.0060 -2.0206 47 1 5.8000 -3.5452 -2.1867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199406880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = -60.727040 kcal Electronic energy + Delta-G solvation = -27409.718222 eV Core-core repulsion = 23525.616507 eV Total energy + Delta-G solvation = -3884.101715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09542 -39.82411 -37.66333 -36.86667 -35.31883 -32.79889 -32.40162 -31.49650 -30.38834 -28.79509 -27.47759 -26.37949 -25.45721 -23.94868 -23.29488 -22.09185 -20.81775 -19.96302 -18.95779 -17.68882 -17.50073 -17.06706 -16.63744 -16.20840 -15.52471 -15.43456 -15.25051 -14.78337 -14.78084 -14.47825 -14.22099 -13.95148 -13.90331 -13.68219 -13.50122 -13.11286 -12.99364 -12.81313 -12.66752 -12.57002 -12.33055 -12.22608 -11.96634 -11.63589 -11.56613 -11.30999 -11.04726 -11.01595 -10.95136 -10.74079 -10.58459 -10.56281 -9.77283 -9.28751 -9.26245 -9.04072 -8.77181 -8.46740 -8.18496 -6.46607 -6.18803 -3.89040 2.06407 2.49226 2.99324 3.10990 3.24084 3.28211 3.32278 3.56042 3.65000 3.88736 4.02577 4.22827 4.41919 4.48663 4.57951 4.68710 4.74362 4.81013 4.92596 4.94931 4.97518 5.07109 5.14359 5.16211 5.21130 5.24587 5.37504 5.38115 5.42146 5.55401 5.60257 5.61592 5.72166 5.75442 5.91789 5.95642 5.98913 6.00739 6.15630 6.17241 6.53560 6.60559 6.71132 6.87386 7.61639 7.63886 7.66876 8.37886 8.62848 9.26327 10.88605 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.002029 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.135675 B =13799.853747 C =14577.001129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.624 5.624 3 C 0.100 3.900 4 C -0.120 4.120 5 C 0.057 3.943 6 H 0.116 0.884 7 N -0.656 5.656 8 C 0.085 3.915 9 C -0.122 4.122 10 C 0.108 3.892 11 N -0.619 5.619 12 C 0.535 3.465 13 O -0.518 6.518 14 C -0.150 4.150 15 S -0.062 6.062 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.117 3.883 25 C -0.132 4.132 26 C 0.484 3.516 27 O -0.527 6.527 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.346 0.654 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.063 0.937 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.640 22.005 0.345 33.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.359 5.359 3 C -0.024 4.024 4 C -0.159 4.159 5 C -0.057 4.057 6 H 0.134 0.866 7 N -0.286 5.286 8 C -0.024 4.024 9 C -0.161 4.161 10 C -0.016 4.016 11 N -0.356 5.356 12 C 0.323 3.677 13 O -0.393 6.393 14 C -0.301 4.301 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.006 4.006 25 C -0.171 4.171 26 C 0.269 3.731 27 O -0.402 6.402 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.165 0.835 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.090 0.910 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.194 20.281 -0.891 31.583 hybrid contribution -0.217 1.114 1.894 2.208 sum -24.411 21.395 1.003 32.476 Atomic orbital electron populations 1.21583 0.78192 1.03808 1.01529 1.48222 1.06554 1.07687 1.73439 1.22171 0.90747 0.87324 1.02135 1.22657 0.95769 0.93835 1.03598 1.22437 0.89115 0.94948 0.99196 0.86614 1.60788 1.42384 1.18440 1.07023 1.21606 0.96591 0.87899 0.96349 1.21946 0.97171 0.96808 1.00146 1.21722 1.02999 0.86689 0.90169 1.48102 1.13408 1.36703 1.37351 1.20322 0.83279 0.80479 0.83572 1.90686 1.82371 1.32257 1.33960 1.23550 0.98257 1.06263 1.01983 1.85410 1.04637 1.43899 1.49559 1.22861 0.99661 1.23351 1.22374 0.90958 1.24992 0.97906 0.94637 0.96086 1.70019 1.24090 1.21781 1.34383 0.86174 0.80162 0.78924 0.80267 1.20302 1.20775 1.19697 1.21445 0.86759 0.96888 0.95542 1.22061 1.02162 0.94972 0.97907 1.22140 0.90808 0.84648 0.75482 1.90748 1.78683 1.20983 1.49793 0.89965 0.92014 0.92005 0.90168 0.90832 0.88521 0.89113 0.83527 0.92250 0.90391 0.91087 0.91687 0.88935 0.89235 0.89329 0.92214 0.91859 0.88614 0.90993 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 11.14 59.85 0.67 1.13 16 2 N -0.62 -4.07 3.33 -180.29 -0.60 -4.67 16 3 C 0.10 0.35 7.35 -3.12 -0.02 0.33 16 4 C -0.12 -0.48 6.88 -25.10 -0.17 -0.66 16 5 C 0.06 0.39 3.03 -67.72 -0.20 0.19 16 6 H 0.12 0.77 7.19 -51.93 -0.37 0.40 16 7 N -0.66 -5.37 6.10 -99.70 -0.61 -5.98 16 8 C 0.08 0.82 2.21 -67.67 -0.15 0.67 16 9 C -0.12 -1.19 5.57 -26.61 -0.15 -1.34 16 10 C 0.11 1.25 6.34 -3.71 -0.02 1.22 16 11 N -0.62 -9.24 2.97 -172.77 -0.51 -9.76 16 12 C 0.54 10.55 7.72 -10.99 -0.08 10.46 16 13 O -0.52 -12.21 15.27 5.55 0.08 -12.13 16 14 C -0.15 -3.11 4.50 36.00 0.16 -2.95 16 15 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 16 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 17 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 20 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.12 1.54 6.43 -3.71 -0.02 1.52 16 25 C -0.13 -1.43 5.36 -26.61 -0.14 -1.57 16 26 C 0.48 4.43 7.36 -10.86 -0.08 4.35 16 27 O -0.53 -6.93 16.43 5.55 0.09 -6.84 16 28 H 0.08 0.56 7.53 -51.93 -0.39 0.17 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.35 2.88 8.09 -39.29 -0.32 2.57 16 36 H 0.06 0.66 7.03 -51.93 -0.37 0.30 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.57 7.43 -51.93 -0.39 0.18 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 41 H 0.09 1.72 7.69 -51.91 -0.40 1.32 16 42 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.10 1.43 7.00 -51.94 -0.36 1.07 16 46 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -36.80 389.11 -9.72 -46.52 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.51 Total: -0.29 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -0.03 Total: 0.34 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.99 Total: -46.03 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.18 Total: -18.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.80 -9.72 -46.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199406880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.205 kcal (2) G-P(sol) polarization free energy of solvation -36.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds