Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46759 * 124.35159 * 2 1 4 4 C 1.54481 * 105.47539 * 197.04074 * 3 2 1 5 5 C 1.54630 * 101.76396 * 334.58561 * 4 3 2 6 6 H 1.09002 * 110.60150 * 266.06450 * 5 4 3 7 7 N 1.46901 * 110.48572 * 143.47336 * 5 4 3 8 8 C 1.46905 * 110.99870 * 158.77178 * 7 5 4 9 9 C 1.53039 * 109.45969 * 275.03075 * 8 7 5 10 10 C 1.53200 * 109.31115 * 178.60240 * 9 8 7 11 11 N 1.46923 * 108.76283 * 54.65170 * 10 9 8 12 12 C 1.34779 * 120.62616 * 126.36217 * 11 10 9 13 13 O 1.21283 * 120.00051 * 180.02562 * 12 11 10 14 14 C 1.50696 * 120.00087 * 0.02562 * 12 11 10 15 15 S 1.81005 * 109.47124 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00071 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00222 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99806 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00395 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99539 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46969 * 90.00285 * 20 18 16 22 22 H 1.48506 * 109.47103 * 209.99989 * 20 18 16 23 23 H 1.48496 * 109.47487 * 330.00485 * 20 18 16 24 24 C 1.46926 * 118.74465 * 306.38305 * 11 10 9 25 25 C 1.53036 * 109.45804 * 154.97348 * 8 7 5 26 26 C 1.34422 * 124.34541 * 180.02562 * 2 1 3 27 27 O 1.21283 * 124.94506 * 359.59595 * 26 2 1 28 28 H 1.09004 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46953 * 299.95008 * 1 2 3 30 30 H 1.08997 * 109.47425 * 59.94802 * 1 2 3 31 31 H 1.08993 * 110.24671 * 316.04475 * 3 2 1 32 32 H 1.08995 * 110.24411 * 77.95615 * 3 2 1 33 33 H 1.08998 * 110.96912 * 216.47329 * 4 3 2 34 34 H 1.08996 * 110.97000 * 92.70288 * 4 3 2 35 35 H 1.00901 * 111.00067 * 282.72353 * 7 5 4 36 36 H 1.09001 * 109.46097 * 35.00235 * 8 7 5 37 37 H 1.09000 * 109.49718 * 298.56236 * 9 8 7 38 38 H 1.08996 * 109.49979 * 58.65896 * 9 8 7 39 39 H 1.08997 * 109.59638 * 294.86812 * 10 9 8 40 40 H 1.08995 * 109.58321 * 174.43513 * 10 9 8 41 41 H 1.09004 * 109.47302 * 299.99850 * 14 12 11 42 42 H 1.08998 * 109.47342 * 59.99885 * 14 12 11 43 43 H 0.96997 * 120.00155 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.58247 * 293.82764 * 24 11 10 45 45 H 1.08989 * 109.58728 * 173.39540 * 24 11 10 46 46 H 1.08999 * 109.50120 * 301.33768 * 25 8 7 47 47 H 1.09001 * 109.49961 * 61.40528 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 -0.4363 5 6 3.6898 -0.7379 -0.0111 6 1 4.1203 -0.8556 0.9834 7 7 4.4210 -1.5572 -0.9869 8 6 4.8553 -2.8265 -0.3882 9 6 6.1865 -2.6187 0.3376 10 6 6.6188 -3.9357 0.9900 11 7 6.6496 -4.9847 -0.0383 12 6 7.7574 -5.7288 -0.2270 13 8 7.7706 -6.5914 -1.0794 14 6 8.9797 -5.4890 0.6212 15 16 10.2893 -6.6382 0.1308 16 6 11.5600 -6.1496 1.2495 17 1 11.3810 -5.3514 1.9546 18 6 12.7905 -6.7913 1.2252 19 7 13.0085 -7.7645 0.3661 20 14 14.1377 -6.2727 2.4107 21 1 14.0283 -7.0654 3.6617 22 1 15.4644 -6.5118 1.7877 23 1 13.9916 -4.8288 2.7253 24 6 5.4502 -5.2068 -0.8573 25 6 5.0309 -3.8755 -1.4886 26 6 2.2234 -1.1099 -0.0005 27 8 1.7945 -2.2443 0.0060 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5131 0.8905 30 1 -0.3634 0.5146 -0.8895 31 1 1.8982 1.9384 -0.7098 32 1 2.3298 1.6434 1.0001 33 1 4.4754 1.3008 0.0960 34 1 3.8264 0.8451 -1.5147 35 1 3.8643 -1.7188 -1.8128 36 1 4.1034 -3.1686 0.3230 37 1 6.9450 -2.3007 -0.3775 38 1 6.0667 -1.8546 1.1056 39 1 5.9070 -4.2087 1.7691 40 1 7.6119 -3.8198 1.4238 41 1 9.3239 -4.4642 0.4811 42 1 8.7310 -5.6485 1.6703 43 1 13.8685 -8.2126 0.3489 44 1 4.6432 -5.5833 -0.2287 45 1 5.6724 -5.9295 -1.6422 46 1 4.0885 -4.0060 -2.0206 47 1 5.8000 -3.5452 -2.1867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199406880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = -87.769273 kcal Electronic energy + Delta-G solvation = -27410.890862 eV Core-core repulsion = 23525.616507 eV Total energy + Delta-G solvation = -3885.274354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70837 -41.07642 -38.80262 -37.50341 -36.26024 -34.57291 -33.63252 -32.48048 -31.25849 -30.14081 -27.97858 -27.67161 -26.94052 -24.90716 -24.26472 -22.54381 -21.87756 -20.53244 -20.32934 -19.48533 -18.32704 -17.87175 -17.61534 -16.99165 -16.86371 -16.70568 -16.64207 -16.14504 -15.87929 -15.36415 -15.21483 -14.87904 -14.83171 -14.57744 -14.45688 -14.40006 -14.16074 -13.64279 -13.47403 -13.39391 -13.27453 -13.14541 -13.08713 -12.93390 -12.87912 -12.59661 -12.43907 -12.23615 -12.06867 -11.73250 -11.70936 -11.45110 -11.29800 -11.13053 -10.86631 -10.24913 -9.76096 -9.72208 -9.43475 -8.66442 -8.33133 -6.11728 1.26270 1.42405 1.43824 1.46788 1.56797 1.57801 2.05176 2.10006 2.28617 2.92393 3.00895 3.25901 3.38027 3.60981 3.64419 3.77088 3.87796 4.07118 4.07917 4.15633 4.24079 4.27967 4.29791 4.35769 4.39343 4.44471 4.50935 4.54784 4.67900 4.69996 4.74591 4.78747 4.82677 4.82940 4.98441 5.07989 5.14177 5.17828 5.34962 5.43075 5.52671 5.54841 5.89794 6.03461 6.19331 6.21147 6.28728 7.06825 7.07783 7.13330 8.76147 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.002029 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.135675 B =13799.853747 C =14577.001129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.622 5.622 3 C 0.098 3.902 4 C -0.111 4.111 5 C 0.057 3.943 6 H 0.122 0.878 7 N -0.652 5.652 8 C 0.092 3.908 9 C -0.113 4.113 10 C 0.100 3.900 11 N -0.606 5.606 12 C 0.533 3.467 13 O -0.568 6.568 14 C -0.122 4.122 15 S -0.154 6.154 16 C -0.544 4.544 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.256 1.256 24 C 0.115 3.885 25 C -0.123 4.123 26 C 0.472 3.528 27 O -0.579 6.579 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.344 0.656 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.181 25.822 2.238 36.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.356 5.356 3 C -0.024 4.024 4 C -0.149 4.149 5 C -0.056 4.056 6 H 0.140 0.860 7 N -0.282 5.282 8 C -0.017 4.017 9 C -0.151 4.151 10 C -0.023 4.023 11 N -0.340 5.340 12 C 0.321 3.679 13 O -0.447 6.447 14 C -0.273 4.273 15 S 0.073 5.927 16 C -0.692 4.692 17 H 0.102 0.898 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.180 1.180 24 C -0.008 4.008 25 C -0.161 4.161 26 C 0.258 3.742 27 O -0.459 6.459 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.787 24.197 1.022 34.654 hybrid contribution -0.252 0.027 1.295 1.320 sum -25.039 24.224 2.317 34.915 Atomic orbital electron populations 1.21692 0.77653 1.02872 1.03330 1.48435 1.07268 1.08138 1.71773 1.22418 0.89862 0.86327 1.03809 1.22680 0.96748 0.91609 1.03855 1.22576 0.87458 0.96366 0.99245 0.86022 1.60831 1.42653 1.17462 1.07240 1.21455 0.96409 0.88321 0.95549 1.21874 0.96529 0.96224 1.00504 1.22053 1.03949 0.86487 0.89784 1.48113 1.12275 1.36087 1.37530 1.20175 0.84145 0.80621 0.82996 1.90669 1.83319 1.34684 1.36054 1.23361 0.96192 1.04839 1.02911 1.85622 1.08296 1.47593 1.51192 1.23194 0.99938 1.23680 1.22373 0.89774 1.26157 1.00750 0.94396 0.97982 1.70191 1.24928 1.23244 1.36471 0.84936 0.76191 0.79259 0.77474 1.19349 1.20359 1.17978 1.21560 0.86160 0.97979 0.95139 1.21954 1.02140 0.93956 0.98077 1.22579 0.92089 0.84446 0.75053 1.90713 1.79664 1.23017 1.52460 0.92288 0.90175 0.90193 0.88192 0.89042 0.86517 0.89166 0.83681 0.93265 0.91389 0.88381 0.89718 0.88614 0.87268 0.87416 0.92029 0.90546 0.90885 0.90061 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.14 127.77 1.42 2.18 16 2 N -0.62 -6.85 3.33 -842.91 -2.81 -9.66 16 3 C 0.10 0.34 7.35 86.83 0.64 0.97 16 4 C -0.11 -0.51 6.88 31.65 0.22 -0.29 16 5 C 0.06 0.65 3.03 44.91 0.14 0.79 16 6 H 0.12 1.25 7.19 -2.39 -0.02 1.23 16 7 N -0.65 -9.47 6.10 -469.34 -2.86 -12.34 16 8 C 0.09 1.65 2.21 44.94 0.10 1.75 16 9 C -0.11 -1.91 5.57 30.67 0.17 -1.74 16 10 C 0.10 2.08 6.34 86.37 0.55 2.62 16 11 N -0.61 -17.71 2.97 -818.91 -2.43 -20.15 16 12 C 0.53 21.23 7.72 87.66 0.68 21.91 16 13 O -0.57 -27.97 15.27 -3.04 -0.05 -28.01 16 14 C -0.12 -5.03 4.50 71.23 0.32 -4.71 16 15 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 16 C -0.54 -31.32 9.50 67.95 0.65 -30.67 16 17 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 18 C 0.01 0.67 5.49 84.86 0.47 1.14 16 19 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 20 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 24 C 0.11 3.03 6.43 86.36 0.56 3.58 16 25 C -0.12 -2.58 5.36 30.67 0.16 -2.42 16 26 C 0.47 8.10 7.36 87.90 0.65 8.74 16 27 O -0.58 -15.34 16.43 -3.04 -0.05 -15.39 16 28 H 0.06 0.80 7.53 -2.39 -0.02 0.79 16 29 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.09 0.47 8.09 -2.39 -0.02 0.45 16 35 H 0.34 5.33 8.09 -89.69 -0.73 4.60 16 36 H 0.05 1.03 7.03 -2.39 -0.02 1.01 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.10 1.19 7.43 -2.39 -0.02 1.17 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.10 1.96 5.93 -2.39 -0.01 1.95 16 41 H 0.11 4.05 7.69 -2.39 -0.02 4.04 16 42 H 0.11 4.01 7.94 -2.40 -0.02 3.99 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 2.29 7.00 -2.39 -0.02 2.27 16 46 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 47 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -84.13 389.11 -0.09 -84.23 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.25 Total: 17.95 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.71 Total: 3.85 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -7.82 Total: -98.46 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.10 Total: -43.40 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -84.13 -0.09 -84.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199406880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.544 kcal (2) G-P(sol) polarization free energy of solvation -84.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds