Wall clock time and date at job start Sat Apr 11 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46767 * 124.35083 * 2 1 4 4 C 1.54473 * 105.47618 * 162.98606 * 3 2 1 5 5 C 1.54630 * 101.76450 * 25.41683 * 4 3 2 6 6 H 1.08997 * 110.49120 * 216.39439 * 5 4 3 7 7 N 1.46906 * 110.48360 * 93.88016 * 5 4 3 8 8 C 1.46902 * 110.99573 * 155.00198 * 7 5 4 9 9 H 1.08996 * 109.50215 * 35.06604 * 8 7 5 10 10 C 1.53045 * 109.49484 * 155.16183 * 8 7 5 11 11 C 1.53036 * 109.53775 * 181.31689 * 10 8 7 12 12 C 1.53194 * 109.31036 * 298.63349 * 11 10 8 13 13 N 1.46922 * 108.77742 * 54.63745 * 12 11 10 14 14 C 1.34777 * 120.63117 * 126.41124 * 13 12 11 15 15 O 1.21283 * 119.99965 * 179.97438 * 14 13 12 16 16 C 1.50699 * 120.00236 * 359.97438 * 14 13 12 17 17 S 1.81001 * 109.47185 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99729 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00059 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99533 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99808 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00486 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47201 * 89.99608 * 22 20 18 24 24 H 1.48493 * 109.47561 * 209.99934 * 22 20 18 25 25 H 1.48500 * 109.46993 * 330.00112 * 22 20 18 26 26 C 1.46926 * 118.73600 * 306.39285 * 13 12 11 27 27 C 1.34417 * 124.34948 * 180.02562 * 2 1 3 28 28 O 1.21278 * 124.94289 * 0.43794 * 27 2 1 29 29 H 1.09000 * 109.46968 * 89.99417 * 1 2 3 30 30 H 1.09000 * 109.47161 * 209.99702 * 1 2 3 31 31 H 1.08999 * 109.46652 * 329.99797 * 1 2 3 32 32 H 1.09001 * 110.24482 * 43.98478 * 3 2 1 33 33 H 1.08999 * 110.32328 * 282.02995 * 3 2 1 34 34 H 1.09003 * 110.97041 * 267.30575 * 4 3 2 35 35 H 1.08997 * 111.00285 * 143.55219 * 4 3 2 36 36 H 1.00896 * 111.00309 * 31.04610 * 7 5 4 37 37 H 1.08999 * 109.45855 * 301.33787 * 10 8 7 38 38 H 1.08997 * 109.46106 * 61.29134 * 10 8 7 39 39 H 1.09005 * 109.49695 * 178.68674 * 11 10 8 40 40 H 1.08993 * 109.50032 * 58.58575 * 11 10 8 41 41 H 1.09001 * 109.58816 * 294.85006 * 12 11 10 42 42 H 1.09002 * 109.70272 * 174.49324 * 12 11 10 43 43 H 1.09002 * 109.46872 * 300.00005 * 16 14 13 44 44 H 1.08993 * 109.47092 * 59.99773 * 16 14 13 45 45 H 0.96995 * 119.99924 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58556 * 293.81739 * 26 13 12 47 47 H 1.09003 * 109.58622 * 173.39367 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7010 0.7488 0.4356 5 6 3.6898 -0.7378 0.0100 6 1 4.2346 -1.3456 0.7323 7 7 4.2688 -0.8929 -1.3312 8 6 4.8087 -2.2462 -1.5182 9 1 4.1827 -2.9641 -0.9883 10 6 4.8272 -2.5871 -3.0101 11 6 5.3588 -4.0091 -3.2036 12 6 6.7929 -4.0907 -2.6711 13 7 6.8071 -3.6257 -1.2775 14 6 7.3339 -4.3931 -0.3028 15 8 7.3401 -3.9977 0.8437 16 6 7.9153 -5.7425 -0.6376 17 16 8.5374 -6.5229 0.8724 18 6 9.1424 -8.0380 0.2068 19 1 9.0576 -8.2349 -0.8517 20 6 9.7279 -8.9785 1.0430 21 7 10.1795 -10.1107 0.5458 22 14 9.8753 -8.6378 2.8737 23 1 8.6630 -9.1390 3.5696 24 1 11.0753 -9.3280 3.4107 25 1 10.0045 -7.1752 3.0961 26 6 6.2365 -2.3079 -0.9667 27 6 2.2234 -1.1098 -0.0005 28 8 1.7946 -2.2442 -0.0086 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.8985 1.9383 0.7102 33 1 2.3309 1.6445 -0.9997 34 1 3.8269 0.8447 1.5141 35 1 4.4758 1.3010 -0.0962 36 1 4.9765 -0.1944 -1.5026 37 1 3.8157 -2.5199 -3.4105 38 1 5.4729 -1.8834 -3.5354 39 1 5.3498 -4.2597 -4.2644 40 1 4.7278 -4.7108 -2.6582 41 1 7.4432 -3.4572 -3.2743 42 1 7.1434 -5.1219 -2.7158 43 1 7.1424 -6.3716 -1.0793 44 1 8.7334 -5.6198 -1.3472 45 1 10.5883 -10.7681 1.1302 46 1 6.8415 -1.5291 -1.4309 47 1 6.2175 -2.1635 0.1135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207432054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:11 Heat of formation + Delta-G solvation = -59.729136 kcal Electronic energy + Delta-G solvation = -27798.421546 eV Core-core repulsion = 23914.363104 eV Total energy + Delta-G solvation = -3884.058443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91619 -39.96888 -37.71251 -36.71680 -35.42505 -32.86656 -32.42513 -31.88376 -30.14223 -28.51839 -27.34870 -26.08635 -25.65273 -25.10194 -22.81106 -22.29678 -20.89907 -19.71322 -19.15619 -17.71672 -17.08174 -16.93781 -16.80427 -16.13863 -15.83260 -15.55102 -15.04730 -14.90675 -14.86549 -14.46463 -14.18788 -14.03613 -13.76623 -13.62726 -13.34125 -13.25723 -13.06835 -13.02919 -12.80465 -12.77476 -12.55425 -12.05664 -11.96536 -11.83920 -11.49578 -11.26037 -11.11641 -11.02259 -10.99554 -10.80355 -10.58987 -10.17913 -9.85320 -9.51896 -9.13044 -9.00955 -8.98621 -8.48041 -8.44674 -6.90830 -6.27775 -3.99439 2.27519 2.67493 2.70482 2.92285 3.17626 3.34566 3.51408 3.58103 3.78492 3.88486 4.02470 4.34061 4.40276 4.49669 4.59850 4.67420 4.77170 4.82614 4.84205 4.87305 5.00010 5.03300 5.08604 5.11277 5.14507 5.21381 5.26277 5.35673 5.36621 5.40986 5.45581 5.57230 5.64022 5.70681 5.76085 5.84721 5.98208 6.01725 6.09995 6.15200 6.37232 6.62852 6.73278 6.93032 7.44874 7.93659 7.95322 8.42255 8.42925 9.18456 10.81422 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.002426 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.263383 B =11538.809044 C =12193.756420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.623 5.623 3 C 0.110 3.890 4 C -0.137 4.137 5 C 0.049 3.951 6 H 0.088 0.912 7 N -0.659 5.659 8 C 0.070 3.930 9 H 0.092 0.908 10 C -0.102 4.102 11 C -0.136 4.136 12 C 0.106 3.894 13 N -0.614 5.614 14 C 0.534 3.466 15 O -0.521 6.521 16 C -0.121 4.121 17 S -0.144 6.144 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 C 0.089 3.911 27 C 0.533 3.467 28 O -0.523 6.523 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.349 0.651 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.064 0.936 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.515 26.793 -7.401 31.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.358 5.358 3 C -0.013 4.013 4 C -0.175 4.175 5 C -0.064 4.064 6 H 0.106 0.894 7 N -0.292 5.292 8 C -0.041 4.041 9 H 0.110 0.890 10 C -0.140 4.140 11 C -0.175 4.175 12 C -0.017 4.017 13 N -0.350 5.350 14 C 0.322 3.678 15 O -0.395 6.395 16 C -0.271 4.271 17 S 0.083 5.917 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.160 1.160 26 C -0.036 4.036 27 C 0.319 3.681 28 O -0.397 6.397 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.169 0.831 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.342 26.450 -5.958 31.657 hybrid contribution 0.891 -0.467 -0.167 1.020 sum -15.451 25.983 -6.125 30.844 Atomic orbital electron populations 1.21529 0.78067 1.03001 1.01906 1.48086 1.06398 1.07344 1.74001 1.22010 0.90157 0.87207 1.01959 1.22858 0.97385 0.94339 1.02893 1.22274 0.94193 0.97578 0.92349 0.89424 1.60412 1.38396 1.05067 1.25363 1.22131 0.93977 0.90238 0.97725 0.88956 1.21431 1.01895 0.96115 0.94541 1.21938 0.96319 0.97484 1.01739 1.21796 0.97098 1.01350 0.81505 1.47972 1.60976 1.18043 1.08056 1.20336 0.76960 0.85870 0.84635 1.90678 1.56115 1.72963 1.19766 1.23303 1.03518 0.95396 1.04893 1.84793 1.77005 1.20420 1.09500 1.22304 1.45122 1.00954 0.98372 0.89371 1.24712 0.93553 0.93901 0.99164 1.69941 1.38301 1.07206 1.36236 0.86732 0.78688 0.81513 0.84901 1.19207 1.19956 1.15954 1.22243 0.93797 0.85103 1.02480 1.20682 0.88627 0.84229 0.74596 1.90734 1.78443 1.21216 1.49308 0.92592 0.90713 0.91139 0.90501 0.90748 0.89147 0.88602 0.83060 0.91020 0.91793 0.90211 0.91060 0.91320 0.88992 0.88458 0.88471 0.91955 0.91783 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 10.96 59.85 0.66 1.31 16 2 N -0.62 -5.26 3.33 -180.29 -0.60 -5.86 16 3 C 0.11 0.54 7.35 -3.12 -0.02 0.51 16 4 C -0.14 -0.66 6.84 -25.10 -0.17 -0.83 16 5 C 0.05 0.44 3.02 -67.72 -0.20 0.23 16 6 H 0.09 0.92 7.26 -51.93 -0.38 0.54 16 7 N -0.66 -5.40 6.10 -99.62 -0.61 -6.01 16 8 C 0.07 0.72 2.47 -67.59 -0.17 0.56 16 9 H 0.09 1.29 7.67 -51.93 -0.40 0.89 16 10 C -0.10 -0.92 5.49 -26.69 -0.15 -1.06 16 11 C -0.14 -1.28 6.08 -26.61 -0.16 -1.44 16 12 C 0.11 1.13 6.34 -3.71 -0.02 1.11 16 13 N -0.61 -8.50 2.97 -172.77 -0.51 -9.01 16 14 C 0.53 9.93 7.72 -10.99 -0.08 9.84 16 15 O -0.52 -11.50 15.28 5.56 0.08 -11.42 16 16 C -0.12 -2.40 4.50 36.01 0.16 -2.24 16 17 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 18 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.75 13.97 55.49 0.78 -25.97 16 22 Si 0.86 22.06 27.74 -169.99 -4.71 17.34 16 23 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 26 C 0.09 1.02 5.68 -3.71 -0.02 1.00 16 27 C 0.53 6.31 7.62 -10.86 -0.08 6.22 16 28 O -0.52 -8.62 17.43 5.56 0.10 -8.52 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.27 7.56 -51.93 -0.39 -0.12 16 36 H 0.35 2.03 7.74 -39.29 -0.30 1.72 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 43 H 0.10 1.83 7.70 -51.91 -0.40 1.43 16 44 H 0.10 1.79 7.94 -51.92 -0.41 1.38 16 45 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 47 H 0.09 1.20 6.45 -51.93 -0.33 0.87 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -37.54 387.92 -9.24 -46.78 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.56 Total: -0.58 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.05 Total: 3.11 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.95 Total: -46.86 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.18 Total: -19.94 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.54 -9.24 -46.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207432054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.949 kcal (2) G-P(sol) polarization free energy of solvation -37.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds