Wall clock time and date at job start Sat Apr 11 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46767 * 124.35083 * 2 1 4 4 C 1.54473 * 105.47618 * 162.98606 * 3 2 1 5 5 C 1.54630 * 101.76450 * 25.41683 * 4 3 2 6 6 H 1.08997 * 110.49120 * 216.39439 * 5 4 3 7 7 N 1.46906 * 110.48360 * 93.88016 * 5 4 3 8 8 C 1.46902 * 110.99573 * 155.00198 * 7 5 4 9 9 H 1.08996 * 109.50215 * 35.06604 * 8 7 5 10 10 C 1.53045 * 109.49484 * 155.16183 * 8 7 5 11 11 C 1.53036 * 109.53775 * 181.31689 * 10 8 7 12 12 C 1.53194 * 109.31036 * 298.63349 * 11 10 8 13 13 N 1.46922 * 108.77742 * 54.63745 * 12 11 10 14 14 C 1.34777 * 120.63117 * 126.41124 * 13 12 11 15 15 O 1.21283 * 119.99965 * 179.97438 * 14 13 12 16 16 C 1.50699 * 120.00236 * 359.97438 * 14 13 12 17 17 S 1.81001 * 109.47185 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99729 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00059 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99533 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99808 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00486 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47201 * 89.99608 * 22 20 18 24 24 H 1.48493 * 109.47561 * 209.99934 * 22 20 18 25 25 H 1.48500 * 109.46993 * 330.00112 * 22 20 18 26 26 C 1.46926 * 118.73600 * 306.39285 * 13 12 11 27 27 C 1.34417 * 124.34948 * 180.02562 * 2 1 3 28 28 O 1.21278 * 124.94289 * 0.43794 * 27 2 1 29 29 H 1.09000 * 109.46968 * 89.99417 * 1 2 3 30 30 H 1.09000 * 109.47161 * 209.99702 * 1 2 3 31 31 H 1.08999 * 109.46652 * 329.99797 * 1 2 3 32 32 H 1.09001 * 110.24482 * 43.98478 * 3 2 1 33 33 H 1.08999 * 110.32328 * 282.02995 * 3 2 1 34 34 H 1.09003 * 110.97041 * 267.30575 * 4 3 2 35 35 H 1.08997 * 111.00285 * 143.55219 * 4 3 2 36 36 H 1.00896 * 111.00309 * 31.04610 * 7 5 4 37 37 H 1.08999 * 109.45855 * 301.33787 * 10 8 7 38 38 H 1.08997 * 109.46106 * 61.29134 * 10 8 7 39 39 H 1.09005 * 109.49695 * 178.68674 * 11 10 8 40 40 H 1.08993 * 109.50032 * 58.58575 * 11 10 8 41 41 H 1.09001 * 109.58816 * 294.85006 * 12 11 10 42 42 H 1.09002 * 109.70272 * 174.49324 * 12 11 10 43 43 H 1.09002 * 109.46872 * 300.00005 * 16 14 13 44 44 H 1.08993 * 109.47092 * 59.99773 * 16 14 13 45 45 H 0.96995 * 119.99924 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58556 * 293.81739 * 26 13 12 47 47 H 1.09003 * 109.58622 * 173.39367 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7010 0.7488 0.4356 5 6 3.6898 -0.7378 0.0100 6 1 4.2346 -1.3456 0.7323 7 7 4.2688 -0.8929 -1.3312 8 6 4.8087 -2.2462 -1.5182 9 1 4.1827 -2.9641 -0.9883 10 6 4.8272 -2.5871 -3.0101 11 6 5.3588 -4.0091 -3.2036 12 6 6.7929 -4.0907 -2.6711 13 7 6.8071 -3.6257 -1.2775 14 6 7.3339 -4.3931 -0.3028 15 8 7.3401 -3.9977 0.8437 16 6 7.9153 -5.7425 -0.6376 17 16 8.5374 -6.5229 0.8724 18 6 9.1424 -8.0380 0.2068 19 1 9.0576 -8.2349 -0.8517 20 6 9.7279 -8.9785 1.0430 21 7 10.1795 -10.1107 0.5458 22 14 9.8753 -8.6378 2.8737 23 1 8.6630 -9.1390 3.5696 24 1 11.0753 -9.3280 3.4107 25 1 10.0045 -7.1752 3.0961 26 6 6.2365 -2.3079 -0.9667 27 6 2.2234 -1.1098 -0.0005 28 8 1.7946 -2.2442 -0.0086 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.8985 1.9383 0.7102 33 1 2.3309 1.6445 -0.9997 34 1 3.8269 0.8447 1.5141 35 1 4.4758 1.3010 -0.0962 36 1 4.9765 -0.1944 -1.5026 37 1 3.8157 -2.5199 -3.4105 38 1 5.4729 -1.8834 -3.5354 39 1 5.3498 -4.2597 -4.2644 40 1 4.7278 -4.7108 -2.6582 41 1 7.4432 -3.4572 -3.2743 42 1 7.1434 -5.1219 -2.7158 43 1 7.1424 -6.3716 -1.0793 44 1 8.7334 -5.6198 -1.3472 45 1 10.5883 -10.7681 1.1302 46 1 6.8415 -1.5291 -1.4309 47 1 6.2175 -2.1635 0.1135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207432054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:10 Heat of formation + Delta-G solvation = -88.290424 kcal Electronic energy + Delta-G solvation = -27799.660057 eV Core-core repulsion = 23914.363104 eV Total energy + Delta-G solvation = -3885.296953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71840 -41.11995 -38.85452 -37.59719 -36.30791 -34.69289 -33.79610 -32.67191 -31.38046 -29.49381 -28.01145 -27.88516 -26.71210 -26.20588 -23.67250 -22.88261 -21.90971 -20.47529 -20.45954 -19.54248 -18.33395 -17.72686 -17.62884 -17.27429 -17.06439 -16.78639 -16.57687 -16.08551 -15.87272 -15.53878 -15.30263 -14.94798 -14.91270 -14.76270 -14.51728 -14.38015 -14.28987 -13.92828 -13.64438 -13.57731 -13.47531 -13.36425 -13.17662 -13.04222 -12.69400 -12.53409 -12.43071 -12.23479 -11.96506 -11.88722 -11.84046 -11.58919 -11.19422 -11.08453 -10.97957 -10.54985 -10.04183 -9.71870 -9.41465 -9.03139 -8.53480 -6.24834 0.93926 1.29388 1.40373 1.44505 1.46300 1.51935 2.00530 2.07190 2.23056 2.65392 2.84536 3.05628 3.29125 3.45094 3.50621 3.74502 3.90035 3.94331 3.97627 4.01211 4.15045 4.21510 4.25731 4.33927 4.36183 4.42951 4.50442 4.57060 4.62350 4.71904 4.73691 4.77555 4.82494 4.88909 4.93363 5.05349 5.08216 5.22905 5.31815 5.41908 5.56509 5.69032 5.76140 6.04222 6.09343 6.18489 6.37361 6.91533 7.02164 7.11776 8.58857 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.002426 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.263383 B =11538.809044 C =12193.756420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.619 5.619 3 C 0.105 3.895 4 C -0.125 4.125 5 C 0.048 3.952 6 H 0.062 0.938 7 N -0.648 5.648 8 C 0.081 3.919 9 H 0.046 0.954 10 C -0.095 4.095 11 C -0.132 4.132 12 C 0.098 3.902 13 N -0.603 5.603 14 C 0.532 3.468 15 O -0.565 6.565 16 C -0.105 4.105 17 S -0.179 6.179 18 C -0.527 4.527 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.265 1.265 24 H -0.256 1.256 25 H -0.237 1.237 26 C 0.090 3.910 27 C 0.515 3.485 28 O -0.588 6.588 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.367 0.633 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.045 0.955 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.277 0.723 46 H 0.101 0.899 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.473 30.545 -8.650 35.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.352 5.352 3 C -0.016 4.016 4 C -0.163 4.163 5 C -0.065 4.065 6 H 0.080 0.920 7 N -0.283 5.283 8 C -0.030 4.030 9 H 0.065 0.935 10 C -0.133 4.133 11 C -0.171 4.171 12 C -0.023 4.023 13 N -0.337 5.337 14 C 0.319 3.681 15 O -0.444 6.444 16 C -0.256 4.256 17 S 0.048 5.952 18 C -0.675 4.675 19 H 0.082 0.918 20 C -0.160 4.160 21 N -0.553 5.553 22 Si 0.736 3.264 23 H -0.190 1.190 24 H -0.180 1.180 25 H -0.161 1.161 26 C -0.034 4.034 27 C 0.302 3.698 28 O -0.467 6.467 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.191 0.809 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.064 0.936 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.087 0.913 46 H 0.119 0.881 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.311 30.285 -7.265 35.157 hybrid contribution 0.747 -1.523 0.067 1.697 sum -15.564 28.762 -7.198 33.486 Atomic orbital electron populations 1.21681 0.77331 1.03609 1.02449 1.48326 1.07276 1.07739 1.71893 1.22336 0.89424 0.86024 1.03811 1.22930 0.98478 0.91110 1.03763 1.22227 0.92079 1.00134 0.92072 0.92010 1.60357 1.38616 1.04339 1.25032 1.21907 0.92269 0.90581 0.98275 0.93548 1.21401 1.02257 0.96348 0.93252 1.21927 0.94868 0.97344 1.02914 1.22120 0.98613 1.01812 0.79798 1.48017 1.58945 1.18204 1.08498 1.20073 0.77450 0.85668 0.84876 1.90660 1.58391 1.73755 1.21580 1.23269 1.04308 0.96147 1.01848 1.84724 1.77427 1.19319 1.13744 1.22425 1.45054 1.02572 0.97426 0.91836 1.25550 0.93309 0.93765 1.03329 1.70012 1.39190 1.08117 1.37975 0.85878 0.79309 0.81336 0.79914 1.18956 1.18043 1.16119 1.22433 0.94877 0.84506 1.01587 1.21304 0.90341 0.84094 0.74091 1.90685 1.79718 1.23816 1.52502 0.92092 0.92952 0.87671 0.87737 0.89064 0.88456 0.85584 0.80918 0.91544 0.88903 0.87446 0.93645 0.87932 0.89563 0.87503 0.86622 0.91321 0.88138 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 10.96 127.77 1.40 2.54 16 2 N -0.62 -9.76 3.33 -842.90 -2.81 -12.57 16 3 C 0.11 0.67 7.35 86.83 0.64 1.31 16 4 C -0.13 -0.85 6.84 31.65 0.22 -0.63 16 5 C 0.05 0.84 3.02 44.91 0.14 0.97 16 6 H 0.06 1.39 7.26 -2.39 -0.02 1.37 16 7 N -0.65 -9.54 6.10 -469.09 -2.86 -12.40 16 8 C 0.08 1.62 2.47 44.99 0.11 1.74 16 9 H 0.05 1.39 7.67 -2.39 -0.02 1.37 16 10 C -0.09 -1.48 5.49 30.62 0.17 -1.31 16 11 C -0.13 -2.24 6.08 30.67 0.19 -2.05 16 12 C 0.10 1.87 6.34 86.36 0.55 2.41 16 13 N -0.60 -16.01 2.97 -818.92 -2.43 -18.44 16 14 C 0.53 19.81 7.72 87.66 0.68 20.49 16 15 O -0.57 -25.54 15.28 -3.04 -0.05 -25.59 16 16 C -0.10 -4.19 4.50 71.24 0.32 -3.87 16 17 S -0.18 -9.36 18.55 -56.49 -1.05 -10.41 16 18 C -0.53 -31.30 10.04 67.95 0.68 -30.61 16 19 H 0.06 3.95 8.03 -2.91 -0.02 3.93 16 20 C 0.05 2.75 5.50 84.86 0.47 3.21 16 21 N -0.92 -56.35 13.97 21.65 0.30 -56.05 16 22 Si 0.91 45.94 27.74 68.60 1.90 47.85 16 23 H -0.26 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 26 C 0.09 1.95 5.68 86.36 0.49 2.44 16 27 C 0.51 12.60 7.62 87.90 0.67 13.27 16 28 O -0.59 -21.07 17.43 -3.02 -0.05 -21.12 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.90 7.93 -2.39 -0.02 0.88 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.13 0.13 7.56 -2.39 -0.02 0.11 16 36 H 0.37 2.93 7.74 -89.70 -0.69 2.24 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 1.77 5.93 -2.39 -0.01 1.75 16 43 H 0.11 4.04 7.70 -2.39 -0.02 4.02 16 44 H 0.12 4.17 7.94 -2.40 -0.02 4.15 16 45 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 46 H 0.10 1.50 8.04 -2.39 -0.02 1.48 16 47 H 0.06 1.78 6.45 -2.39 -0.02 1.76 16 Total: -1.00 -87.59 387.92 -0.09 -87.69 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.24 Total: 11.16 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 6.71 Total: 9.90 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -7.80 Total: -99.46 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.10 Total: -46.71 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.85 kcal Atomic # 16 Polarization: -9.36 SS G_CDS: -1.05 Total: -10.41 kcal Total: -87.59 -0.09 -87.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207432054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.605 kcal (2) G-P(sol) polarization free energy of solvation -87.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds