Wall clock time and date at job start Sat Apr 11 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46771 * 124.34558 * 2 1 4 4 C 1.54483 * 105.47101 * 197.03542 * 3 2 1 5 5 C 1.54627 * 101.76432 * 334.58458 * 4 3 2 6 6 H 1.08999 * 110.59887 * 143.53534 * 5 4 3 7 7 N 1.46905 * 110.48465 * 266.12155 * 5 4 3 8 8 C 1.46843 * 110.99914 * 169.08030 * 7 5 4 9 9 C 1.53041 * 109.52468 * 185.83756 * 8 7 5 10 10 C 1.53120 * 109.27748 * 300.82052 * 9 8 7 11 11 N 1.46500 * 109.52253 * 177.55778 * 10 9 8 12 12 C 1.34773 * 119.99778 * 155.00301 * 11 10 9 13 13 O 1.21286 * 120.00212 * 359.97438 * 12 11 10 14 14 C 1.50707 * 119.99877 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47182 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99921 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00375 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00015 * 180.02562 * 16 15 14 19 19 N 1.31637 * 119.99942 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00110 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47120 * 269.99429 * 20 18 16 22 22 H 1.48504 * 109.47550 * 150.00080 * 20 18 16 23 23 H 1.48502 * 109.47290 * 29.99769 * 20 18 16 24 24 C 1.53126 * 109.15908 * 57.65064 * 10 9 8 25 25 C 1.46854 * 110.99756 * 293.28796 * 7 5 4 26 26 C 1.34415 * 124.35279 * 180.02562 * 2 1 3 27 27 O 1.21283 * 124.94406 * 359.53645 * 26 2 1 28 28 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47581 * 299.99913 * 1 2 3 30 30 H 1.09001 * 109.47232 * 60.00394 * 1 2 3 31 31 H 1.08994 * 110.24282 * 316.03582 * 3 2 1 32 32 H 1.09001 * 110.24233 * 77.94498 * 3 2 1 33 33 H 1.08999 * 110.96404 * 216.46446 * 4 3 2 34 34 H 1.09002 * 110.96608 * 92.70129 * 4 3 2 35 35 H 1.08999 * 109.46314 * 65.82070 * 8 7 5 36 36 H 1.09001 * 109.46399 * 305.85213 * 8 7 5 37 37 H 1.09000 * 109.50520 * 180.87751 * 9 8 7 38 38 H 1.08999 * 109.49867 * 60.75886 * 9 8 7 39 39 H 1.09005 * 109.52201 * 297.68454 * 10 9 8 40 40 H 0.96999 * 120.00186 * 334.99655 * 11 10 9 41 41 H 1.08994 * 109.47384 * 59.99291 * 14 12 11 42 42 H 1.09005 * 109.46941 * 299.99290 * 14 12 11 43 43 H 0.96997 * 119.99953 * 0.02562 * 19 18 16 44 44 H 1.08999 * 109.49945 * 62.29240 * 24 10 9 45 45 H 1.08995 * 109.49886 * 182.40221 * 24 10 9 46 46 H 1.08998 * 109.45785 * 294.17611 * 25 7 5 47 47 H 1.08999 * 109.45825 * 54.14862 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2118 0.0000 4 6 3.7009 0.7489 -0.4362 5 6 3.6898 -0.7377 -0.0109 6 1 4.2329 -1.3472 -0.7331 7 7 4.2692 -0.8931 1.3301 8 6 4.0329 -2.2451 1.8520 9 6 4.5192 -2.3264 3.3008 10 6 6.0128 -1.9931 3.3521 11 7 6.4712 -2.0123 4.7434 12 6 7.7679 -2.2512 5.0224 13 8 8.5553 -2.4508 4.1217 14 6 8.2394 -2.2715 6.4537 15 16 10.0157 -2.6164 6.4990 16 6 10.2897 -2.5819 8.2391 17 1 9.4675 -2.3867 8.9115 18 6 11.5627 -2.8045 8.7457 19 7 12.5650 -3.0419 7.9262 20 14 11.8531 -2.7686 10.5906 21 1 12.1977 -1.3864 11.0107 22 1 12.9715 -3.6833 10.9337 23 1 10.6212 -3.2073 11.2944 24 6 6.2375 -0.5996 2.7584 25 6 5.7014 -0.5685 1.3254 26 6 2.2235 -1.1097 -0.0005 27 8 1.7947 -2.2442 0.0070 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8981 1.9385 -0.7099 32 1 2.3295 1.6437 1.0001 33 1 4.4753 1.3012 0.0961 34 1 3.8264 0.8452 -1.5147 35 1 4.5769 -2.9689 1.2452 36 1 2.9666 -2.4679 1.8139 37 1 4.3580 -3.3344 3.6828 38 1 3.9659 -1.6125 3.9109 39 1 6.5706 -2.7304 2.7746 40 1 5.8415 -1.8530 5.4638 41 1 7.7048 -3.0476 7.0014 42 1 8.0453 -1.3027 6.9139 43 1 12.4141 -3.0610 6.9682 44 1 5.7113 0.1414 3.3601 45 1 7.3038 -0.3741 2.7530 46 1 6.2375 -1.3002 0.7210 47 1 5.8468 0.4265 0.9048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226152497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:25 Heat of formation + Delta-G solvation = -66.031722 kcal Electronic energy + Delta-G solvation = -27350.018977 eV Core-core repulsion = 23465.687234 eV Total energy + Delta-G solvation = -3884.331743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.23635 -39.71536 -38.23313 -36.85107 -35.12297 -32.88782 -32.52370 -31.22171 -30.91877 -28.96607 -27.51360 -26.59748 -24.85597 -23.78856 -23.49006 -21.62617 -20.39926 -20.13227 -19.81092 -18.32342 -17.65001 -17.12209 -16.46795 -16.36091 -16.06732 -15.43309 -15.17571 -14.98726 -14.49959 -14.44223 -14.05832 -13.95476 -13.84901 -13.71423 -13.53034 -13.34953 -13.11361 -12.99843 -12.71712 -12.42133 -12.37733 -12.08968 -12.00579 -11.95029 -11.74856 -11.53165 -11.38013 -10.99230 -10.90710 -10.78463 -10.19009 -10.08332 -9.58176 -9.46642 -9.17950 -9.02079 -8.92148 -8.78869 -8.21866 -6.66628 -6.62121 -3.99746 2.03389 2.54404 2.92603 3.00528 3.34764 3.39325 3.48886 3.54572 3.61473 3.75615 3.99350 4.25056 4.38622 4.49277 4.62949 4.64459 4.78366 4.83260 4.92713 4.95063 5.00748 5.03401 5.08656 5.12166 5.21935 5.22570 5.25720 5.26618 5.37365 5.42552 5.46990 5.56817 5.65310 5.67666 5.77194 5.81341 5.95845 6.02576 6.03402 6.13925 6.52689 6.59198 6.61615 6.67899 7.66152 7.72213 7.92846 8.50357 8.53750 9.27263 10.81887 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034387 B = 0.001812 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.068839 B =15450.917204 C =15595.740114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.617 5.617 3 C 0.109 3.891 4 C -0.129 4.129 5 C 0.049 3.951 6 H 0.078 0.922 7 N -0.519 5.519 8 C 0.052 3.948 9 C -0.120 4.120 10 C 0.145 3.855 11 N -0.733 5.733 12 C 0.532 3.468 13 O -0.519 6.519 14 C -0.131 4.131 15 S -0.116 6.116 16 C -0.607 4.607 17 H 0.066 0.934 18 C 0.035 3.965 19 N -0.885 5.885 20 Si 1.087 2.913 21 H -0.284 1.284 22 H -0.280 1.280 23 H -0.287 1.287 24 C -0.125 4.125 25 C 0.058 3.942 26 C 0.529 3.471 27 O -0.529 6.529 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.398 0.602 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.278 0.722 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.041 0.959 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.334 10.604 -17.044 32.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.352 5.352 3 C -0.013 4.013 4 C -0.167 4.167 5 C -0.063 4.063 6 H 0.096 0.904 7 N -0.246 5.246 8 C -0.076 4.076 9 C -0.159 4.159 10 C 0.040 3.960 11 N -0.386 5.386 12 C 0.318 3.682 13 O -0.393 6.393 14 C -0.282 4.282 15 S 0.110 5.890 16 C -0.755 4.755 17 H 0.084 0.916 18 C -0.176 4.176 19 N -0.519 5.519 20 Si 0.913 3.087 21 H -0.211 1.211 22 H -0.205 1.205 23 H -0.213 1.213 24 C -0.164 4.164 25 C -0.070 4.070 26 C 0.316 3.684 27 O -0.405 6.405 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.232 0.768 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.059 0.941 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.399 9.812 -17.094 30.594 hybrid contribution -2.160 0.077 -0.129 2.165 sum -25.559 9.889 -17.223 32.368 Atomic orbital electron populations 1.21577 0.77904 1.03827 1.01593 1.48084 1.06548 1.07486 1.73035 1.22050 0.90028 0.86949 1.02311 1.22749 0.97467 0.94446 1.02044 1.22345 0.93433 0.98031 0.92494 0.90383 1.62009 1.15183 1.27617 1.19811 1.22194 1.02525 0.88053 0.94820 1.21848 0.94763 1.02540 0.96714 1.20949 0.94367 0.97496 0.83173 1.46033 1.09792 1.74727 1.08021 1.20287 0.81583 0.75302 0.91056 1.90695 1.53521 1.47261 1.47841 1.23324 1.04473 1.05235 0.95212 1.84804 0.99337 1.93420 1.11448 1.23734 1.00350 1.60978 0.90480 0.91586 1.26059 0.90981 0.92958 1.07572 1.70770 1.32883 1.42621 1.05612 0.83288 0.75836 0.77129 0.72426 1.21061 1.20507 1.21302 1.21979 1.01829 0.97638 0.94983 1.22150 0.86002 1.01359 0.97514 1.20615 0.88680 0.84357 0.74779 1.90728 1.78514 1.21095 1.50150 0.89931 0.91851 0.92026 0.90459 0.90416 0.88094 0.89571 0.94038 0.89151 0.90583 0.90573 0.89702 0.76781 0.89013 0.88988 0.90966 0.90800 0.90342 0.94064 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 11.14 59.85 0.67 1.16 16 2 N -0.62 -4.43 3.33 -180.28 -0.60 -5.03 16 3 C 0.11 0.50 7.35 -3.12 -0.02 0.47 16 4 C -0.13 -0.60 6.65 -25.10 -0.17 -0.76 16 5 C 0.05 0.38 2.66 -67.72 -0.18 0.20 16 6 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 7 N -0.52 -4.49 4.53 -226.70 -1.03 -5.51 16 8 C 0.05 0.52 5.11 -3.83 -0.02 0.50 16 9 C -0.12 -1.16 5.57 -26.65 -0.15 -1.31 16 10 C 0.15 1.72 2.52 -67.80 -0.17 1.55 16 11 N -0.73 -9.69 5.08 -53.68 -0.27 -9.96 16 12 C 0.53 9.79 7.82 -10.98 -0.09 9.70 16 13 O -0.52 -11.56 15.52 5.55 0.09 -11.47 16 14 C -0.13 -2.65 6.16 36.01 0.22 -2.43 16 15 S -0.12 -3.14 19.60 -107.50 -2.11 -5.25 16 16 C -0.61 -17.58 9.50 30.94 0.29 -17.29 16 17 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 18 C 0.03 1.01 5.49 -17.43 -0.10 0.92 16 19 N -0.88 -27.62 13.67 55.49 0.76 -26.86 16 20 Si 1.09 25.08 29.92 -169.99 -5.09 19.99 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.13 -1.33 5.67 -26.65 -0.15 -1.48 16 25 C 0.06 0.49 5.31 -3.83 -0.02 0.47 16 26 C 0.53 5.20 6.69 -10.86 -0.07 5.13 16 27 O -0.53 -7.09 15.70 5.56 0.09 -7.00 16 28 H 0.08 0.56 7.53 -51.93 -0.39 0.16 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.41 6.23 -51.93 -0.32 0.08 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 1.02 5.79 -51.93 -0.30 0.72 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.21 7.58 -51.93 -0.39 0.81 16 40 H 0.40 4.17 8.61 -40.82 -0.35 3.82 16 41 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 43 H 0.28 8.86 7.12 -40.82 -0.29 8.57 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.56 6.23 -51.93 -0.32 0.24 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -37.01 387.19 -9.78 -46.78 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.50 Total: 1.64 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 0.05 Total: -3.16 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -1.14 Total: -47.37 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.09 Total: 19.99 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.11 Total: -5.25 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.01 -9.78 -46.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.249 kcal (2) G-P(sol) polarization free energy of solvation -37.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds