Wall clock time and date at job start Sat Apr 11 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46771 * 124.34558 * 2 1 4 4 C 1.54483 * 105.47101 * 197.03542 * 3 2 1 5 5 C 1.54627 * 101.76432 * 334.58458 * 4 3 2 6 6 H 1.08999 * 110.59887 * 143.53534 * 5 4 3 7 7 N 1.46905 * 110.48465 * 266.12155 * 5 4 3 8 8 C 1.46843 * 110.99914 * 169.08030 * 7 5 4 9 9 C 1.53041 * 109.52468 * 185.83756 * 8 7 5 10 10 C 1.53120 * 109.27748 * 300.82052 * 9 8 7 11 11 N 1.46500 * 109.52253 * 177.55778 * 10 9 8 12 12 C 1.34773 * 119.99778 * 155.00301 * 11 10 9 13 13 O 1.21286 * 120.00212 * 359.97438 * 12 11 10 14 14 C 1.50707 * 119.99877 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47182 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99921 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00375 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00015 * 180.02562 * 16 15 14 19 19 N 1.31637 * 119.99942 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00110 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47120 * 269.99429 * 20 18 16 22 22 H 1.48504 * 109.47550 * 150.00080 * 20 18 16 23 23 H 1.48502 * 109.47290 * 29.99769 * 20 18 16 24 24 C 1.53126 * 109.15908 * 57.65064 * 10 9 8 25 25 C 1.46854 * 110.99756 * 293.28796 * 7 5 4 26 26 C 1.34415 * 124.35279 * 180.02562 * 2 1 3 27 27 O 1.21283 * 124.94406 * 359.53645 * 26 2 1 28 28 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47581 * 299.99913 * 1 2 3 30 30 H 1.09001 * 109.47232 * 60.00394 * 1 2 3 31 31 H 1.08994 * 110.24282 * 316.03582 * 3 2 1 32 32 H 1.09001 * 110.24233 * 77.94498 * 3 2 1 33 33 H 1.08999 * 110.96404 * 216.46446 * 4 3 2 34 34 H 1.09002 * 110.96608 * 92.70129 * 4 3 2 35 35 H 1.08999 * 109.46314 * 65.82070 * 8 7 5 36 36 H 1.09001 * 109.46399 * 305.85213 * 8 7 5 37 37 H 1.09000 * 109.50520 * 180.87751 * 9 8 7 38 38 H 1.08999 * 109.49867 * 60.75886 * 9 8 7 39 39 H 1.09005 * 109.52201 * 297.68454 * 10 9 8 40 40 H 0.96999 * 120.00186 * 334.99655 * 11 10 9 41 41 H 1.08994 * 109.47384 * 59.99291 * 14 12 11 42 42 H 1.09005 * 109.46941 * 299.99290 * 14 12 11 43 43 H 0.96997 * 119.99953 * 0.02562 * 19 18 16 44 44 H 1.08999 * 109.49945 * 62.29240 * 24 10 9 45 45 H 1.08995 * 109.49886 * 182.40221 * 24 10 9 46 46 H 1.08998 * 109.45785 * 294.17611 * 25 7 5 47 47 H 1.08999 * 109.45825 * 54.14862 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2118 0.0000 4 6 3.7009 0.7489 -0.4362 5 6 3.6898 -0.7377 -0.0109 6 1 4.2329 -1.3472 -0.7331 7 7 4.2692 -0.8931 1.3301 8 6 4.0329 -2.2451 1.8520 9 6 4.5192 -2.3264 3.3008 10 6 6.0128 -1.9931 3.3521 11 7 6.4712 -2.0123 4.7434 12 6 7.7679 -2.2512 5.0224 13 8 8.5553 -2.4508 4.1217 14 6 8.2394 -2.2715 6.4537 15 16 10.0157 -2.6164 6.4990 16 6 10.2897 -2.5819 8.2391 17 1 9.4675 -2.3867 8.9115 18 6 11.5627 -2.8045 8.7457 19 7 12.5650 -3.0419 7.9262 20 14 11.8531 -2.7686 10.5906 21 1 12.1977 -1.3864 11.0107 22 1 12.9715 -3.6833 10.9337 23 1 10.6212 -3.2073 11.2944 24 6 6.2375 -0.5996 2.7584 25 6 5.7014 -0.5685 1.3254 26 6 2.2235 -1.1097 -0.0005 27 8 1.7947 -2.2442 0.0070 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8981 1.9385 -0.7099 32 1 2.3295 1.6437 1.0001 33 1 4.4753 1.3012 0.0961 34 1 3.8264 0.8452 -1.5147 35 1 4.5769 -2.9689 1.2452 36 1 2.9666 -2.4679 1.8139 37 1 4.3580 -3.3344 3.6828 38 1 3.9659 -1.6125 3.9109 39 1 6.5706 -2.7304 2.7746 40 1 5.8415 -1.8530 5.4638 41 1 7.7048 -3.0476 7.0014 42 1 8.0453 -1.3027 6.9139 43 1 12.4141 -3.0610 6.9682 44 1 5.7113 0.1414 3.3601 45 1 7.3038 -0.3741 2.7530 46 1 6.2375 -1.3002 0.7210 47 1 5.8468 0.4265 0.9048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226152497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:25 Heat of formation + Delta-G solvation = -94.105968 kcal Electronic energy + Delta-G solvation = -27351.236368 eV Core-core repulsion = 23465.687234 eV Total energy + Delta-G solvation = -3885.549134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.90347 -40.94278 -39.25425 -37.55345 -36.15445 -34.74554 -33.77508 -32.08462 -31.82890 -30.26089 -28.10661 -27.25281 -26.99359 -24.55057 -24.40213 -22.19954 -21.74196 -21.10701 -20.45842 -20.35053 -18.40366 -17.93572 -17.70727 -17.51658 -16.78221 -16.52513 -16.40175 -15.99584 -15.84204 -15.70267 -15.09086 -14.98091 -14.81964 -14.70660 -14.54957 -14.42675 -14.27599 -13.92189 -13.76170 -13.59981 -13.55458 -13.24448 -13.12896 -12.74478 -12.60507 -12.36310 -12.31332 -12.00533 -11.94327 -11.89572 -11.73002 -11.53536 -11.10326 -11.02762 -10.80672 -10.32269 -10.14342 -9.72726 -9.52208 -8.92511 -8.86571 -6.27438 1.19999 1.32569 1.51872 1.52119 1.61598 1.79872 2.03731 2.16795 2.34762 2.81175 3.02411 3.13631 3.18941 3.53492 3.59427 3.80322 3.85736 3.95871 4.00287 4.14417 4.17571 4.22532 4.30829 4.34476 4.37970 4.38968 4.47475 4.53988 4.61352 4.65133 4.73307 4.78543 4.83388 4.85766 4.93043 5.05898 5.06934 5.11809 5.20114 5.45027 5.54133 5.64791 5.84283 5.86165 6.05784 6.15105 6.44578 7.06026 7.06282 7.16810 8.50988 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034387 B = 0.001812 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.068839 B =15450.917204 C =15595.740114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.614 5.614 3 C 0.107 3.893 4 C -0.120 4.120 5 C 0.045 3.955 6 H 0.071 0.929 7 N -0.513 5.513 8 C 0.056 3.944 9 C -0.108 4.108 10 C 0.145 3.855 11 N -0.706 5.706 12 C 0.535 3.465 13 O -0.564 6.564 14 C -0.110 4.110 15 S -0.195 6.195 16 C -0.614 4.614 17 H 0.075 0.925 18 C -0.020 4.020 19 N -0.913 5.913 20 Si 1.139 2.861 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.263 1.263 24 C -0.119 4.119 25 C 0.063 3.937 26 C 0.517 3.483 27 O -0.578 6.578 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.027 0.973 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.261 0.739 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.616 13.022 -16.243 34.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.347 5.347 3 C -0.015 4.015 4 C -0.158 4.158 5 C -0.066 4.066 6 H 0.089 0.911 7 N -0.239 5.239 8 C -0.072 4.072 9 C -0.146 4.146 10 C 0.040 3.960 11 N -0.359 5.359 12 C 0.321 3.679 13 O -0.443 6.443 14 C -0.261 4.261 15 S 0.032 5.968 16 C -0.761 4.761 17 H 0.093 0.907 18 C -0.223 4.223 19 N -0.549 5.549 20 Si 0.957 3.043 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.187 1.187 24 C -0.158 4.158 25 C -0.065 4.065 26 C 0.304 3.696 27 O -0.457 6.457 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.045 0.955 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -25.762 12.293 -16.307 32.874 hybrid contribution -1.619 -0.636 -0.482 1.805 sum -27.380 11.657 -16.790 34.168 Atomic orbital electron populations 1.21718 0.77031 1.03116 1.03462 1.48301 1.07401 1.07693 1.71294 1.22283 0.89513 0.86203 1.03508 1.22810 0.98001 0.91676 1.03286 1.22429 0.92108 1.00386 0.91725 0.91098 1.62040 1.15005 1.26361 1.20529 1.22080 1.01505 0.88755 0.94864 1.21754 0.92856 1.03164 0.96818 1.21059 0.95348 0.97888 0.81717 1.45790 1.08137 1.72495 1.09494 1.20001 0.82835 0.75349 0.89736 1.90689 1.55135 1.49769 1.48659 1.23234 0.99014 1.06803 0.97090 1.85046 1.06223 1.93948 1.11616 1.24063 1.00828 1.60187 0.91029 0.90686 1.27840 0.90888 0.91675 1.11893 1.70892 1.33921 1.45106 1.04948 0.82683 0.76727 0.78076 0.66829 1.19198 1.20487 1.18729 1.21886 1.00658 0.96745 0.96471 1.22126 0.85718 1.02571 0.96069 1.20984 0.89764 0.84285 0.74555 1.90693 1.79406 1.23031 1.52603 0.91969 0.90292 0.89770 0.87732 0.89858 0.86897 0.87856 0.95482 0.90254 0.90360 0.88927 0.92429 0.74630 0.87214 0.86903 0.92852 0.89374 0.92677 0.95196 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.14 127.77 1.42 2.22 16 2 N -0.61 -7.65 3.33 -842.89 -2.81 -10.46 16 3 C 0.11 0.60 7.35 86.83 0.64 1.24 16 4 C -0.12 -0.74 6.65 31.65 0.21 -0.53 16 5 C 0.04 0.65 2.66 44.91 0.12 0.76 16 6 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 7 N -0.51 -8.15 4.53 -871.15 -3.95 -12.09 16 8 C 0.06 1.11 5.11 86.33 0.44 1.55 16 9 C -0.11 -1.93 5.57 30.65 0.17 -1.76 16 10 C 0.14 3.31 2.52 45.07 0.11 3.43 16 11 N -0.71 -17.60 5.08 -442.13 -2.25 -19.85 16 12 C 0.54 19.47 7.82 87.66 0.69 20.15 16 13 O -0.56 -25.79 15.52 -3.05 -0.05 -25.84 16 14 C -0.11 -4.33 6.16 71.24 0.44 -3.89 16 15 S -0.20 -10.76 19.60 -56.49 -1.11 -11.87 16 16 C -0.61 -35.46 9.50 67.95 0.65 -34.82 16 17 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 18 C -0.02 -1.16 5.49 84.86 0.47 -0.69 16 19 N -0.91 -58.23 13.67 21.65 0.30 -57.93 16 20 Si 1.14 49.44 29.92 68.60 2.05 51.49 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 C -0.12 -2.37 5.67 30.65 0.17 -2.20 16 25 C 0.06 0.99 5.31 86.32 0.46 1.45 16 26 C 0.52 9.89 6.69 87.90 0.59 10.48 16 27 O -0.58 -16.02 15.70 -3.04 -0.05 -16.06 16 28 H 0.06 0.83 7.53 -2.39 -0.02 0.82 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.11 0.46 6.23 -2.39 -0.01 0.45 16 34 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 1.81 5.79 -2.39 -0.01 1.80 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.68 7.58 -2.38 -0.02 1.66 16 40 H 0.42 7.52 8.61 -92.71 -0.80 6.72 16 41 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 42 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 43 H 0.26 17.28 7.12 -92.71 -0.66 16.62 16 44 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 46 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.11 1.17 6.23 -2.39 -0.01 1.16 16 Total: -1.00 -84.53 387.19 -1.00 -85.53 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.29 Total: 19.68 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 6.57 Total: -2.60 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -8.71 Total: -100.33 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -0.10 Total: -41.90 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.05 Total: 51.49 kcal Atomic # 16 Polarization: -10.76 SS G_CDS: -1.11 Total: -11.87 kcal Total: -84.53 -1.00 -85.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.573 kcal (2) G-P(sol) polarization free energy of solvation -84.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds