Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46762 * 124.35170 * 2 1 4 4 C 1.54477 * 105.47551 * 197.03691 * 3 2 1 5 5 C 1.54630 * 101.76569 * 334.58863 * 4 3 2 6 6 H 1.09002 * 110.48556 * 266.11734 * 5 4 3 7 7 N 1.46897 * 110.60110 * 143.52811 * 5 4 3 8 8 C 1.46854 * 111.00165 * 52.70514 * 7 5 4 9 9 C 1.53031 * 109.52311 * 185.84141 * 8 7 5 10 10 C 1.53124 * 109.27950 * 300.81940 * 9 8 7 11 11 N 1.46497 * 109.57352 * 177.59734 * 10 9 8 12 12 C 1.34770 * 120.00277 * 85.28873 * 11 10 9 13 13 O 1.21281 * 120.00255 * 359.97438 * 12 11 10 14 14 C 1.50707 * 119.99885 * 180.02562 * 12 11 10 15 15 S 1.80996 * 109.47004 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00179 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00025 * 0.02562 * 16 15 14 18 18 C 1.38797 * 120.00356 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00081 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46882 * 60.00116 * 20 18 16 22 22 H 1.48500 * 109.47146 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46745 * 300.00405 * 20 18 16 24 24 C 1.53115 * 109.15945 * 57.65726 * 10 9 8 25 25 C 1.46843 * 111.00375 * 176.91760 * 7 5 4 26 26 C 1.34421 * 124.34583 * 180.02562 * 2 1 3 27 27 O 1.21280 * 124.94826 * 359.53647 * 26 2 1 28 28 H 1.09001 * 109.47387 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.99952 * 1 2 3 30 30 H 1.09000 * 109.47228 * 59.99752 * 1 2 3 31 31 H 1.08999 * 110.24818 * 316.04081 * 3 2 1 32 32 H 1.09005 * 110.24422 * 78.04578 * 3 2 1 33 33 H 1.08992 * 110.97522 * 216.46703 * 4 3 2 34 34 H 1.09005 * 110.96644 * 92.70564 * 4 3 2 35 35 H 1.09004 * 109.46090 * 305.85815 * 8 7 5 36 36 H 1.09005 * 109.45866 * 65.82164 * 8 7 5 37 37 H 1.09001 * 109.50335 * 180.88234 * 9 8 7 38 38 H 1.08999 * 109.54174 * 60.78646 * 9 8 7 39 39 H 1.09000 * 109.52073 * 297.74947 * 10 9 8 40 40 H 0.97010 * 119.99664 * 265.28371 * 11 10 9 41 41 H 1.08999 * 109.46891 * 299.99135 * 14 12 11 42 42 H 1.08998 * 109.47353 * 59.99838 * 14 12 11 43 43 H 0.96993 * 120.00332 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.50293 * 182.40367 * 24 10 9 45 45 H 1.08999 * 109.53565 * 62.30431 * 24 10 9 46 46 H 1.09001 * 109.45919 * 294.17814 * 25 7 5 47 47 H 1.08998 * 109.46425 * 54.15233 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 -0.4362 5 6 3.6898 -0.7379 -0.0110 6 1 4.1197 -0.8534 0.9839 7 7 4.4215 -1.5594 -0.9845 8 6 5.7671 -1.0211 -1.2214 9 6 6.4443 -1.8122 -2.3428 10 6 6.5279 -3.2875 -1.9415 11 7 7.1232 -4.0604 -3.0343 12 6 8.4634 -4.1542 -3.1413 13 8 9.1767 -3.5983 -2.3331 14 6 9.0758 -4.9489 -4.2659 15 16 10.8800 -4.8839 -4.1378 16 6 11.3214 -5.8661 -5.5325 17 1 10.5512 -6.2928 -6.1580 18 6 12.6588 -6.0906 -5.8280 19 7 13.5976 -5.5701 -5.0661 20 14 13.1267 -7.1312 -7.3071 21 1 12.5863 -6.5078 -8.5418 22 1 14.6061 -7.2186 -7.4028 23 1 12.5597 -8.4949 -7.1520 24 6 5.1180 -3.8106 -1.6535 25 6 4.4792 -2.9616 -0.5521 26 6 2.2234 -1.1098 -0.0005 27 8 1.7946 -2.2443 0.0070 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8982 1.9385 -0.7099 32 1 2.3311 1.6426 1.0005 33 1 4.4754 1.3008 0.0960 34 1 3.8264 0.8451 -1.5147 35 1 5.6932 0.0275 -1.5101 36 1 6.3579 -1.1056 -0.3093 37 1 7.4488 -1.4225 -2.5078 38 1 5.8620 -1.7167 -3.2593 39 1 7.1432 -3.3874 -1.0474 40 1 6.5527 -4.5048 -3.6809 41 1 8.7437 -5.9850 -4.2014 42 1 8.7643 -4.5262 -5.2211 43 1 14.5322 -5.7267 -5.2727 44 1 5.1748 -4.8486 -1.3260 45 1 4.5137 -3.7471 -2.5585 46 1 5.0760 -3.0370 0.3569 47 1 3.4698 -3.3226 -0.3548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226152499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = -60.604444 kcal Electronic energy + Delta-G solvation = -27199.409603 eV Core-core repulsion = 23315.313204 eV Total energy + Delta-G solvation = -3884.096399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13945 -39.62025 -38.15858 -36.82984 -35.07471 -32.80573 -32.40803 -31.10739 -30.84911 -28.85017 -27.53564 -26.44843 -25.45718 -23.82062 -23.31509 -21.55283 -20.27958 -20.02667 -19.80875 -17.84003 -17.47517 -17.13379 -16.32559 -16.25340 -16.01648 -15.24104 -15.10686 -14.86774 -14.78537 -14.37331 -14.23643 -14.05403 -13.81760 -13.49661 -13.44489 -13.26498 -13.07095 -12.89349 -12.66689 -12.56962 -12.39195 -12.10219 -11.91777 -11.68961 -11.47092 -11.32370 -11.02835 -11.02422 -10.91268 -10.77116 -10.67986 -9.96077 -9.79421 -9.32026 -9.19413 -9.04298 -8.81401 -8.64753 -8.21605 -6.47618 -6.19645 -3.89999 2.13569 2.53411 3.07066 3.14140 3.25036 3.29015 3.33342 3.53135 3.75353 3.79965 4.01329 4.22636 4.46451 4.48093 4.64056 4.74037 4.77696 4.83706 4.95309 4.96354 5.04675 5.07026 5.15348 5.18103 5.20640 5.25656 5.28593 5.36509 5.42953 5.50545 5.53487 5.70771 5.77570 5.80563 5.89545 5.93623 6.03909 6.09683 6.17780 6.24345 6.57074 6.70653 6.73784 6.78685 7.61294 7.78235 7.79056 8.37066 8.67262 9.25551 10.87726 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037764 B = 0.001769 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.269252 B =15822.005872 C =16110.194324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.624 5.624 3 C 0.105 3.895 4 C -0.129 4.129 5 C 0.050 3.950 6 H 0.080 0.920 7 N -0.520 5.520 8 C 0.057 3.943 9 C -0.126 4.126 10 C 0.145 3.855 11 N -0.734 5.734 12 C 0.533 3.467 13 O -0.519 6.519 14 C -0.154 4.154 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.120 4.120 25 C 0.046 3.954 26 C 0.531 3.469 27 O -0.521 6.521 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.035 0.965 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.874 14.725 10.549 32.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.359 5.359 3 C -0.019 4.019 4 C -0.167 4.167 5 C -0.062 4.062 6 H 0.098 0.902 7 N -0.246 5.246 8 C -0.071 4.071 9 C -0.165 4.165 10 C 0.040 3.960 11 N -0.387 5.387 12 C 0.319 3.681 13 O -0.394 6.394 14 C -0.305 4.305 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.158 4.158 25 C -0.082 4.082 26 C 0.318 3.682 27 O -0.396 6.396 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.053 0.947 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -26.042 15.074 11.505 32.215 hybrid contribution -0.377 -1.418 -1.448 2.062 sum -26.419 13.656 10.057 31.394 Atomic orbital electron populations 1.21565 0.77845 1.03877 1.01485 1.48057 1.06565 1.07333 1.73991 1.22092 0.90381 0.87441 1.01961 1.22795 0.96491 0.93535 1.03889 1.22262 0.92841 0.94433 0.96623 0.90224 1.61927 1.16938 1.02271 1.43467 1.22154 0.87419 0.99252 0.98284 1.21980 1.01070 0.94956 0.98481 1.20942 0.93651 0.90494 0.90924 1.46071 1.06848 1.54604 1.31188 1.20304 0.81543 0.80290 0.85953 1.90687 1.60573 1.45807 1.42308 1.23540 1.05998 1.01937 0.98984 1.85366 0.90753 1.68316 1.38943 1.22837 0.94802 1.36894 1.13875 0.90991 1.24987 0.95328 0.95931 0.97316 1.70007 1.00492 1.42412 1.37426 0.86228 0.77444 0.80212 0.81640 1.19949 1.20818 1.19951 1.21829 0.94844 0.99229 0.99903 1.22354 1.02982 0.86998 0.95836 1.20620 0.88676 0.84339 0.74614 1.90652 1.78233 1.20913 1.49799 0.89856 0.92091 0.91955 0.90007 0.90930 0.88903 0.88498 0.90049 0.94261 0.90390 0.90904 0.89805 0.76839 0.89278 0.89258 0.92156 0.90689 0.90575 0.94694 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.14 59.85 0.67 1.16 16 2 N -0.62 -4.34 3.33 -180.29 -0.60 -4.94 16 3 C 0.10 0.41 7.35 -3.12 -0.02 0.39 16 4 C -0.13 -0.60 5.38 -25.10 -0.14 -0.74 16 5 C 0.05 0.39 2.66 -67.72 -0.18 0.21 16 6 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 7 N -0.52 -4.88 4.50 -226.70 -1.02 -5.90 16 8 C 0.06 0.52 5.18 -3.83 -0.02 0.50 16 9 C -0.13 -1.43 5.68 -26.65 -0.15 -1.58 16 10 C 0.15 1.80 2.52 -67.81 -0.17 1.63 16 11 N -0.73 -10.12 5.08 -53.69 -0.27 -10.40 16 12 C 0.53 10.04 7.82 -10.99 -0.09 9.95 16 13 O -0.52 -11.78 15.52 5.56 0.09 -11.70 16 14 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 20 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.12 -1.24 5.57 -26.65 -0.15 -1.38 16 25 C 0.05 0.48 5.33 -3.84 -0.02 0.46 16 26 C 0.53 5.21 7.61 -10.86 -0.08 5.13 16 27 O -0.52 -6.92 14.78 5.56 0.08 -6.84 16 28 H 0.08 0.55 7.53 -51.93 -0.39 0.16 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.50 7.44 -51.93 -0.39 0.12 16 35 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 40 H 0.40 4.42 8.61 -40.82 -0.35 4.07 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.11 1.25 5.47 -51.93 -0.28 0.96 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -36.61 388.37 -9.91 -46.51 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.60 Total: 0.62 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 0.07 Total: -0.29 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -1.16 Total: -46.82 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.17 Total: -18.53 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.61 -9.91 -46.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.094 kcal (2) G-P(sol) polarization free energy of solvation -36.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds