Wall clock time and date at job start Sat Apr 11 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 120.00310 * 2 1 4 4 C 1.52999 * 109.46942 * 264.06908 * 3 2 1 5 5 H 1.09000 * 112.96315 * 288.21155 * 4 3 2 6 6 C 1.53938 * 113.76135 * 59.86071 * 4 3 2 7 7 C 1.53928 * 86.34403 * 138.03303 * 6 4 3 8 8 N 1.47958 * 86.18121 * 336.27993 * 7 6 4 9 9 C 1.46903 * 111.00071 * 137.57937 * 8 7 6 10 10 H 1.09003 * 109.39900 * 306.41108 * 9 8 7 11 11 C 1.53073 * 109.39876 * 66.24065 * 9 8 7 12 12 C 1.53343 * 108.42215 * 169.03317 * 11 9 8 13 13 C 1.52925 * 108.67223 * 292.46280 * 12 11 9 14 14 N 1.45752 * 110.48403 * 50.75662 * 13 12 11 15 15 C 1.33231 * 124.07190 * 340.84616 * 14 13 12 16 16 O 1.21283 * 118.16035 * 182.28897 * 15 14 13 17 17 C 1.34783 * 120.00086 * 180.02562 * 2 1 3 18 18 O 1.21280 * 119.99792 * 184.74461 * 17 2 1 19 19 C 1.50699 * 119.99740 * 4.74340 * 17 2 1 20 20 S 1.81003 * 109.46824 * 175.37823 * 19 17 2 21 21 C 1.76201 * 99.99845 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00091 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00038 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00145 * 0.27308 * 23 21 20 25 25 Si 1.86803 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46860 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47345 * 119.99824 * 25 23 21 28 28 H 1.48498 * 109.47367 * 240.00290 * 25 23 21 29 29 H 1.08999 * 109.46936 * 273.65057 * 1 2 3 30 30 H 1.09000 * 109.47329 * 33.64510 * 1 2 3 31 31 H 1.08997 * 109.47114 * 153.65095 * 1 2 3 32 32 H 1.09002 * 109.46762 * 24.06937 * 3 2 1 33 33 H 1.08994 * 109.47505 * 144.07050 * 3 2 1 34 34 H 1.09003 * 113.73513 * 252.39914 * 6 4 3 35 35 H 1.09009 * 113.73247 * 23.67192 * 6 4 3 36 36 H 1.09005 * 113.75872 * 90.60191 * 7 6 4 37 37 H 1.09000 * 113.76272 * 221.96160 * 7 6 4 38 38 H 1.09006 * 109.67231 * 288.76083 * 11 9 8 39 39 H 1.08998 * 109.67544 * 49.29490 * 11 9 8 40 40 H 1.08996 * 109.60869 * 52.22366 * 12 11 9 41 41 H 1.09003 * 109.60489 * 172.71172 * 12 11 9 42 42 H 1.09000 * 109.29971 * 171.06718 * 13 12 11 43 43 H 1.09002 * 109.30270 * 290.44380 * 13 12 11 44 44 H 0.97003 * 117.94274 * 160.92500 * 14 13 12 45 45 H 1.09006 * 109.47200 * 55.38190 * 19 17 2 46 46 H 1.08997 * 109.47048 * 295.37443 * 19 17 2 47 47 H 0.96997 * 119.99244 * 359.72557 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5816 1.6358 -1.4348 5 1 3.3710 1.0022 -1.8390 6 6 1.3754 1.8009 -2.3769 7 6 2.1076 3.0330 -2.9382 8 7 2.8127 3.0830 -1.6383 9 6 4.2419 3.3667 -1.8251 10 1 4.6647 2.6486 -2.5277 11 6 4.4106 4.7826 -2.3819 12 6 5.8957 5.1578 -2.3100 13 6 6.2973 5.2874 -0.8402 14 7 5.8830 4.1071 -0.0922 15 6 4.9501 3.2506 -0.5060 16 8 4.6587 2.3257 0.2224 17 6 2.1389 -1.1672 -0.0005 18 8 3.3486 -1.1690 0.0864 19 6 1.3892 -2.4700 -0.1090 20 16 2.5695 -3.8378 -0.2196 21 6 1.4535 -5.1965 -0.3341 22 1 0.3876 -5.0223 -0.3223 23 6 1.9440 -6.4906 -0.4394 24 7 3.2430 -6.7034 -0.4483 25 14 0.7608 -7.9311 -0.5601 26 1 -0.6361 -7.4288 -0.5210 27 1 0.9914 -8.6556 -1.8357 28 1 0.9865 -8.8541 0.5811 29 1 -0.3633 0.0654 1.0256 30 1 -0.3634 0.8555 -0.5694 31 1 -0.3633 -0.9209 -0.4561 32 1 1.5666 2.0525 0.4191 33 1 3.0998 1.1673 0.6030 34 1 1.2666 0.9895 -3.0966 35 1 0.4454 2.0404 -1.8611 36 1 2.7593 2.8095 -3.7829 37 1 1.4554 3.8878 -3.1172 38 1 4.0746 4.8117 -3.4185 39 1 3.8257 5.4834 -1.7862 40 1 6.4930 4.3796 -2.7851 41 1 6.0579 6.1082 -2.8186 42 1 7.3796 5.3965 -0.7707 43 1 5.8213 6.1701 -0.4131 44 1 6.3125 3.9353 0.7604 45 1 0.7643 -2.4564 -1.0021 46 1 0.7613 -2.6023 0.7720 47 1 3.8573 -5.9554 -0.3853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230815584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:37 Heat of formation + Delta-G solvation = -29.809755 kcal Electronic energy + Delta-G solvation = -28227.190785 eV Core-core repulsion = 24344.429744 eV Total energy + Delta-G solvation = -3882.761041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26760 -39.60061 -38.73597 -36.73020 -35.14308 -33.25716 -32.47200 -30.76280 -30.09093 -28.12656 -27.09269 -26.22537 -24.80597 -24.12547 -23.31744 -22.57038 -20.00949 -19.53513 -18.93398 -18.08245 -17.63785 -16.82965 -16.71123 -16.17905 -15.91879 -15.77041 -15.11334 -14.76217 -14.51181 -14.34468 -14.22654 -13.85204 -13.78389 -13.55651 -13.28138 -12.99525 -12.86486 -12.77286 -12.37466 -12.27389 -12.00334 -11.92440 -11.84112 -11.72197 -11.62636 -11.49886 -11.32209 -10.89058 -10.86023 -10.41068 -10.17542 -9.81850 -9.49895 -9.31964 -9.24390 -9.13580 -8.96044 -8.32719 -8.13196 -6.59959 -6.57217 -3.93856 2.45986 2.92909 2.97127 3.16990 3.35713 3.43466 3.46147 3.57387 3.86662 4.07181 4.23477 4.29186 4.38778 4.41048 4.48241 4.62382 4.84587 4.89866 4.96673 4.99479 5.13781 5.17876 5.25202 5.27047 5.27386 5.29911 5.34812 5.40420 5.42050 5.50976 5.54783 5.68273 5.68815 5.76398 5.81060 5.90917 5.97016 6.05496 6.10948 6.33503 6.59519 6.73204 6.91155 7.09574 7.69268 7.98433 8.12909 8.55593 8.68479 9.32881 10.86947 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020409 B = 0.002444 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.614910 B =11455.258940 C =12031.435238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.136 3.864 4 C 0.039 3.961 5 H 0.083 0.917 6 C -0.145 4.145 7 C 0.006 3.994 8 N -0.461 5.461 9 C 0.037 3.963 10 H 0.079 0.921 11 C -0.115 4.115 12 C -0.137 4.137 13 C 0.110 3.890 14 N -0.722 5.722 15 C 0.524 3.476 16 O -0.524 6.524 17 C 0.528 3.472 18 O -0.509 6.509 19 C -0.126 4.126 20 S -0.120 6.120 21 C -0.605 4.605 22 H 0.066 0.934 23 C 0.034 3.966 24 N -0.887 5.887 25 Si 1.090 2.910 26 H -0.288 1.288 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.401 0.599 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 29.699 -5.519 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.356 5.356 3 C 0.013 3.987 4 C -0.071 4.071 5 H 0.101 0.899 6 C -0.183 4.183 7 C -0.123 4.123 8 N -0.186 5.186 9 C -0.075 4.075 10 H 0.096 0.904 11 C -0.152 4.152 12 C -0.175 4.175 13 C -0.014 4.014 14 N -0.376 5.376 15 C 0.309 3.691 16 O -0.399 6.399 17 C 0.315 3.685 18 O -0.383 6.383 19 C -0.277 4.277 20 S 0.106 5.894 21 C -0.753 4.753 22 H 0.084 0.916 23 C -0.177 4.177 24 N -0.521 5.521 25 Si 0.917 3.083 26 H -0.214 1.214 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.236 0.764 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.430 28.090 -4.920 28.521 hybrid contribution -0.945 1.217 -0.292 1.568 sum -0.515 29.307 -5.211 29.772 Atomic orbital electron populations 1.21841 0.80098 1.03035 1.01588 1.47793 1.06520 1.05834 1.75496 1.21290 0.98500 0.83833 0.95053 1.23743 0.97138 0.88485 0.97762 0.89919 1.23454 0.98583 0.97444 0.98801 1.23846 0.97494 0.99338 0.91590 1.68453 1.07101 1.19301 1.23702 1.22106 0.92082 0.98868 0.94401 0.90377 1.21679 0.96458 0.95129 1.01982 1.21882 0.96506 1.03305 0.95815 1.21356 1.00115 0.87800 0.92140 1.45423 1.41020 1.26520 1.24674 1.19834 0.79281 0.81735 0.88214 1.90771 1.62572 1.31737 1.54832 1.20287 0.87955 0.84544 0.75710 1.90719 1.13837 1.86657 1.47085 1.23346 1.03434 0.96198 1.04753 1.84829 1.11058 0.97018 1.96464 1.23758 0.94834 0.93897 1.62790 0.91615 1.26051 0.99023 0.99401 0.93178 1.70728 1.02107 1.35716 1.43564 0.83250 0.73617 0.74214 0.77258 1.21419 1.20941 1.20914 0.92858 0.91487 0.90714 0.90806 0.87258 0.90774 0.89075 0.91204 0.89056 0.90652 0.90086 0.90876 0.89427 0.90588 0.91671 0.76361 0.89262 0.89125 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.08 59.84 0.60 1.52 16 2 N -0.62 -9.91 2.70 -181.58 -0.49 -10.40 16 3 C 0.14 2.10 4.92 -4.04 -0.02 2.08 16 4 C 0.04 0.52 2.64 -66.65 -0.18 0.35 16 5 H 0.08 1.37 7.73 -51.93 -0.40 0.97 16 6 C -0.14 -1.50 7.18 -25.80 -0.19 -1.68 16 7 C 0.01 0.05 7.09 -2.77 -0.02 0.03 16 8 N -0.46 -5.05 5.74 -224.41 -1.29 -6.34 16 9 C 0.04 0.38 1.82 -69.08 -0.13 0.25 16 10 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 11 C -0.11 -0.73 5.11 -26.52 -0.14 -0.87 16 12 C -0.14 -0.64 6.02 -26.59 -0.16 -0.80 16 13 C 0.11 0.55 7.17 -4.48 -0.03 0.52 16 14 N -0.72 -6.29 5.44 -61.42 -0.33 -6.63 16 15 C 0.52 6.44 7.44 -11.93 -0.09 6.35 16 16 O -0.52 -8.86 13.30 5.55 0.07 -8.79 16 17 C 0.53 10.98 7.63 -10.98 -0.08 10.89 16 18 O -0.51 -12.71 15.52 5.56 0.09 -12.63 16 19 C -0.13 -2.74 4.66 36.01 0.17 -2.57 16 20 S -0.12 -3.38 19.61 -107.50 -2.11 -5.49 16 21 C -0.60 -17.91 9.50 30.94 0.29 -17.62 16 22 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 23 C 0.03 1.00 5.49 -17.43 -0.10 0.91 16 24 N -0.89 -28.25 13.67 55.49 0.76 -27.49 16 25 Si 1.09 25.62 29.92 -169.99 -5.09 20.53 16 26 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.62 6.24 -51.93 -0.32 0.29 16 31 H 0.07 0.88 6.19 -51.93 -0.32 0.56 16 32 H 0.07 1.01 8.03 -51.93 -0.42 0.60 16 33 H 0.11 2.11 5.05 -51.93 -0.26 1.84 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.86 6.48 -51.92 -0.34 0.52 16 36 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.40 7.77 -51.93 -0.40 -0.01 16 39 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 40 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.40 3.31 8.80 -40.82 -0.36 2.95 16 45 H 0.09 1.78 7.35 -51.91 -0.38 1.40 16 46 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 47 H 0.28 9.09 7.12 -40.82 -0.29 8.80 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -38.50 381.29 -10.01 -48.51 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.31 Total: 3.62 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.06 Total: -0.64 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -1.35 Total: -50.86 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.16 Total: -21.42 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.09 Total: 20.53 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.11 Total: -5.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.50 -10.01 -48.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.700 kcal (2) G-P(sol) polarization free energy of solvation -38.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds