Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99858 * 2 1 4 4 C 1.52995 * 109.47466 * 90.56738 * 3 2 1 5 5 H 1.09001 * 112.74435 * 51.51558 * 4 3 2 6 6 C 1.53514 * 113.53090 * 280.69068 * 4 3 2 7 7 C 1.53505 * 83.57353 * 219.20064 * 6 4 3 8 8 N 1.47471 * 87.93551 * 26.02564 * 7 6 4 9 9 C 1.46909 * 111.00124 * 221.29512 * 8 7 6 10 10 H 1.08995 * 109.32898 * 54.61643 * 9 8 7 11 11 C 1.52879 * 109.50508 * 295.01069 * 9 8 7 12 12 C 1.53347 * 108.58804 * 191.23020 * 11 9 8 13 13 C 1.52922 * 108.67392 * 67.34479 * 12 11 9 14 14 N 1.45756 * 110.48616 * 309.24889 * 13 12 11 15 15 C 1.33352 * 124.10589 * 19.10153 * 14 13 12 16 16 O 1.21285 * 118.24313 * 177.75704 * 15 14 13 17 17 C 1.34777 * 120.00092 * 179.97438 * 2 1 3 18 18 O 1.21285 * 119.99858 * 184.69621 * 17 2 1 19 19 C 1.50697 * 120.00119 * 4.69865 * 17 2 1 20 20 S 1.81002 * 109.47084 * 183.76021 * 19 17 2 21 21 C 1.76196 * 100.00061 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00063 * 359.97438 * 21 20 19 23 23 C 1.38796 * 120.00472 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99480 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00450 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46884 * 90.00016 * 25 23 21 27 27 H 1.48496 * 109.47043 * 210.00333 * 25 23 21 28 28 H 1.48503 * 109.46927 * 329.99824 * 25 23 21 29 29 H 1.09005 * 109.46970 * 86.80101 * 1 2 3 30 30 H 1.08997 * 109.46718 * 206.79496 * 1 2 3 31 31 H 1.08998 * 109.47469 * 326.79698 * 1 2 3 32 32 H 1.09007 * 109.46689 * 330.56579 * 3 2 1 33 33 H 1.09002 * 109.47116 * 210.56859 * 3 2 1 34 34 H 1.08994 * 114.17005 * 332.85305 * 6 4 3 35 35 H 1.09006 * 114.16633 * 105.36314 * 6 4 3 36 36 H 1.09003 * 113.47819 * 271.25815 * 7 6 4 37 37 H 1.09002 * 113.47416 * 140.79469 * 7 6 4 38 38 H 1.09005 * 109.75089 * 71.35474 * 11 9 8 39 39 H 1.09001 * 109.47303 * 310.93971 * 11 9 8 40 40 H 1.08993 * 109.60013 * 307.58843 * 12 11 9 41 41 H 1.08998 * 109.74012 * 187.18080 * 12 11 9 42 42 H 1.08994 * 109.29828 * 188.93925 * 13 12 11 43 43 H 1.08998 * 109.29912 * 69.55978 * 13 12 11 44 44 H 0.97004 * 117.94746 * 199.07336 * 14 13 12 45 45 H 1.09000 * 109.46661 * 303.75530 * 19 17 2 46 46 H 1.08998 * 109.47417 * 63.75408 * 19 17 2 47 47 H 0.97001 * 119.99406 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4649 1.7034 1.4423 5 1 2.9269 0.9179 2.0404 6 6 1.2519 2.3553 2.1209 7 6 2.3087 3.2945 2.7188 8 7 3.1541 3.0030 1.5462 9 6 4.5580 2.8244 1.9405 10 1 4.6210 2.0581 2.7130 11 6 5.1046 4.1411 2.4925 12 6 6.6267 4.0182 2.6324 13 6 7.2402 3.9163 1.2354 14 7 6.5682 2.8831 0.4573 15 6 5.3609 2.3959 0.7460 16 8 4.8839 1.5658 0.0015 17 6 2.1389 -1.1672 0.0005 18 8 3.3487 -1.1689 0.0865 19 6 1.3893 -2.4701 -0.1058 20 16 2.5534 -3.8491 0.0333 21 6 1.4401 -5.2061 -0.1194 22 1 0.3836 -5.0255 -0.2531 23 6 1.9205 -6.5073 -0.0679 24 7 3.2079 -6.7274 0.0955 25 14 0.7401 -7.9460 -0.2306 26 1 0.6055 -8.3163 -1.6623 27 1 1.2653 -9.1059 0.5336 28 1 -0.5887 -7.5593 0.3079 29 1 -0.3633 0.0574 -1.0261 30 1 -0.3633 -0.9173 0.4633 31 1 -0.3634 0.8598 0.5627 32 1 1.6039 2.0309 -0.5051 33 1 3.1455 1.1410 -0.5226 34 1 0.5622 2.8412 1.4308 35 1 0.7528 1.7178 2.8507 36 1 2.7290 2.9336 3.6576 37 1 1.9849 4.3339 2.7732 38 1 4.6616 4.3439 3.4677 39 1 4.8636 4.9515 1.8045 40 1 6.8701 3.1231 3.2049 41 1 7.0217 4.8969 3.1421 42 1 8.2982 3.6700 1.3236 43 1 7.1377 4.8746 0.7262 44 1 7.0279 2.5278 -0.3196 45 1 0.6542 -2.5329 0.6966 46 1 0.8810 -2.5194 -1.0688 47 1 3.5437 -7.6367 0.1311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230815585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = -19.826570 kcal Electronic energy + Delta-G solvation = -28324.438246 eV Core-core repulsion = 24442.110109 eV Total energy + Delta-G solvation = -3882.328138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27977 -39.48731 -38.70316 -36.60251 -34.99887 -33.20654 -32.36246 -30.67668 -29.97202 -27.94042 -27.10736 -26.11456 -25.40157 -24.04925 -23.22025 -22.42246 -19.99658 -19.43641 -18.90473 -17.58668 -17.48475 -16.74557 -16.55881 -16.07673 -15.78652 -15.50979 -14.99068 -14.74751 -14.62075 -14.34156 -14.18256 -14.04456 -13.68623 -13.40118 -13.16443 -12.96479 -12.71134 -12.58565 -12.44942 -12.20837 -11.93180 -11.82551 -11.72893 -11.62225 -11.41572 -11.32223 -11.01787 -10.95219 -10.84750 -10.70679 -10.28220 -9.72388 -9.63709 -9.15686 -9.15269 -9.04083 -9.00225 -8.21699 -8.11430 -6.40899 -6.14974 -3.84252 2.60099 3.08231 3.10581 3.26203 3.30343 3.32836 3.35389 3.65918 3.98747 4.13513 4.27292 4.30879 4.40630 4.48153 4.54782 4.67475 4.92418 4.98478 5.03461 5.11652 5.19648 5.21084 5.27183 5.30564 5.33882 5.35369 5.41790 5.45366 5.48238 5.61160 5.66334 5.69488 5.75874 5.82935 5.88921 5.96144 6.02984 6.07018 6.27088 6.43449 6.70227 6.82957 7.03560 7.24478 7.65785 7.83125 8.31873 8.41861 8.85434 9.30072 10.92447 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.002642 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.050176 B =10594.872753 C =11621.525209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.622 5.622 3 C 0.125 3.875 4 C 0.033 3.967 5 H 0.082 0.918 6 C -0.146 4.146 7 C 0.002 3.998 8 N -0.453 5.453 9 C 0.038 3.962 10 H 0.079 0.921 11 C -0.115 4.115 12 C -0.136 4.136 13 C 0.111 3.889 14 N -0.724 5.724 15 C 0.521 3.479 16 O -0.510 6.510 17 C 0.526 3.474 18 O -0.500 6.500 19 C -0.149 4.149 20 S -0.063 6.063 21 C -0.533 4.533 22 H 0.071 0.929 23 C 0.072 3.928 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.401 0.599 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 27.504 6.509 28.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C 0.002 3.998 4 C -0.077 4.077 5 H 0.100 0.900 6 C -0.184 4.184 7 C -0.127 4.127 8 N -0.177 5.177 9 C -0.074 4.074 10 H 0.096 0.904 11 C -0.153 4.153 12 C -0.175 4.175 13 C -0.013 4.013 14 N -0.379 5.379 15 C 0.306 3.694 16 O -0.384 6.384 17 C 0.313 3.687 18 O -0.372 6.372 19 C -0.299 4.299 20 S 0.163 5.837 21 C -0.681 4.681 22 H 0.090 0.910 23 C -0.137 4.137 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.237 0.763 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.692 27.467 5.948 28.233 hybrid contribution -1.840 -1.505 0.285 2.394 sum 0.852 25.962 6.233 26.713 Atomic orbital electron populations 1.21765 0.80371 1.02823 1.01405 1.47808 1.06359 1.05882 1.75835 1.21552 0.99646 0.83847 0.94795 1.23705 0.93439 0.91407 0.99121 0.90009 1.23298 0.96554 0.98309 1.00265 1.23697 0.94368 1.01230 0.93357 1.68829 0.99015 1.21048 1.28786 1.22084 0.91744 0.98534 0.95083 0.90356 1.21646 0.95010 0.96744 1.01888 1.21869 0.95480 1.03592 0.96531 1.21329 0.96657 0.91364 0.91970 1.45443 1.18866 1.41563 1.31998 1.19809 0.81346 0.81416 0.86807 1.90753 1.67077 1.31655 1.48914 1.20306 0.88053 0.84453 0.75934 1.90752 1.13579 1.86458 1.46452 1.23565 1.04336 0.97584 1.04465 1.85396 1.09764 0.93317 1.95176 1.22874 0.95353 0.92323 1.57551 0.91037 1.24989 0.95634 0.98332 0.94702 1.70033 1.12365 1.21408 1.46570 0.86182 0.80331 0.80756 0.78305 1.20299 1.20814 1.19731 0.93052 0.90866 0.91714 0.91419 0.86073 0.88910 0.90500 0.91325 0.89459 0.90742 0.90161 0.90869 0.89503 0.90665 0.91798 0.76341 0.89661 0.89420 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.26 59.85 0.61 1.57 16 2 N -0.62 -10.11 2.87 -181.57 -0.52 -10.63 16 3 C 0.12 1.92 5.16 -4.04 -0.02 1.90 16 4 C 0.03 0.44 2.61 -71.45 -0.19 0.26 16 5 H 0.08 1.33 7.62 -51.93 -0.40 0.93 16 6 C -0.15 -1.40 7.14 -26.20 -0.19 -1.59 16 7 C 0.00 0.02 6.77 -7.56 -0.05 -0.03 16 8 N -0.45 -5.12 5.86 -230.32 -1.35 -6.47 16 9 C 0.04 0.41 1.82 -69.18 -0.13 0.28 16 10 H 0.08 0.91 7.54 -51.93 -0.39 0.52 16 11 C -0.11 -0.81 5.07 -26.61 -0.14 -0.94 16 12 C -0.14 -0.75 6.02 -26.59 -0.16 -0.91 16 13 C 0.11 0.66 7.17 -4.48 -0.03 0.63 16 14 N -0.72 -7.17 5.45 -61.39 -0.33 -7.50 16 15 C 0.52 6.99 7.45 -11.87 -0.09 6.90 16 16 O -0.51 -9.29 13.33 5.55 0.07 -9.21 16 17 C 0.53 11.09 7.67 -10.99 -0.08 11.00 16 18 O -0.50 -12.59 15.51 5.55 0.09 -12.50 16 19 C -0.15 -3.26 4.90 36.00 0.18 -3.08 16 20 S -0.06 -1.80 20.58 -107.50 -2.21 -4.02 16 21 C -0.53 -15.67 9.50 30.94 0.29 -15.38 16 22 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.88 13.22 55.49 0.73 -26.15 16 25 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.88 6.24 -51.93 -0.32 0.56 16 31 H 0.06 0.61 7.11 -51.93 -0.37 0.24 16 32 H 0.07 0.91 7.95 -51.92 -0.41 0.50 16 33 H 0.12 2.34 4.28 -51.93 -0.22 2.12 16 34 H 0.09 0.81 7.95 -51.93 -0.41 0.40 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.43 7.75 -51.93 -0.40 0.03 16 39 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.40 3.86 8.80 -40.82 -0.36 3.50 16 45 H 0.09 1.71 7.05 -51.92 -0.37 1.34 16 46 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 47 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -38.06 384.24 -10.25 -48.31 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.41 Total: 2.82 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.08 Total: 2.64 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -1.47 Total: -50.75 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.16 Total: -21.71 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.21 Total: -4.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.06 -10.25 -48.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.482 kcal (2) G-P(sol) polarization free energy of solvation -38.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds