Wall clock time and date at job start Sat Apr 11 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99858 * 2 1 4 4 C 1.52995 * 109.47466 * 90.56738 * 3 2 1 5 5 H 1.09001 * 112.74435 * 51.51558 * 4 3 2 6 6 C 1.53514 * 113.53090 * 280.69068 * 4 3 2 7 7 C 1.53505 * 83.57353 * 219.20064 * 6 4 3 8 8 N 1.47471 * 87.93551 * 26.02564 * 7 6 4 9 9 C 1.46909 * 111.00124 * 221.29512 * 8 7 6 10 10 H 1.08995 * 109.32898 * 54.61643 * 9 8 7 11 11 C 1.52879 * 109.50508 * 295.01069 * 9 8 7 12 12 C 1.53347 * 108.58804 * 191.23020 * 11 9 8 13 13 C 1.52922 * 108.67392 * 67.34479 * 12 11 9 14 14 N 1.45756 * 110.48616 * 309.24889 * 13 12 11 15 15 C 1.33352 * 124.10589 * 19.10153 * 14 13 12 16 16 O 1.21285 * 118.24313 * 177.75704 * 15 14 13 17 17 C 1.34777 * 120.00092 * 179.97438 * 2 1 3 18 18 O 1.21285 * 119.99858 * 184.69621 * 17 2 1 19 19 C 1.50697 * 120.00119 * 4.69865 * 17 2 1 20 20 S 1.81002 * 109.47084 * 183.76021 * 19 17 2 21 21 C 1.76196 * 100.00061 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00063 * 359.97438 * 21 20 19 23 23 C 1.38796 * 120.00472 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99480 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00450 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46884 * 90.00016 * 25 23 21 27 27 H 1.48496 * 109.47043 * 210.00333 * 25 23 21 28 28 H 1.48503 * 109.46927 * 329.99824 * 25 23 21 29 29 H 1.09005 * 109.46970 * 86.80101 * 1 2 3 30 30 H 1.08997 * 109.46718 * 206.79496 * 1 2 3 31 31 H 1.08998 * 109.47469 * 326.79698 * 1 2 3 32 32 H 1.09007 * 109.46689 * 330.56579 * 3 2 1 33 33 H 1.09002 * 109.47116 * 210.56859 * 3 2 1 34 34 H 1.08994 * 114.17005 * 332.85305 * 6 4 3 35 35 H 1.09006 * 114.16633 * 105.36314 * 6 4 3 36 36 H 1.09003 * 113.47819 * 271.25815 * 7 6 4 37 37 H 1.09002 * 113.47416 * 140.79469 * 7 6 4 38 38 H 1.09005 * 109.75089 * 71.35474 * 11 9 8 39 39 H 1.09001 * 109.47303 * 310.93971 * 11 9 8 40 40 H 1.08993 * 109.60013 * 307.58843 * 12 11 9 41 41 H 1.08998 * 109.74012 * 187.18080 * 12 11 9 42 42 H 1.08994 * 109.29828 * 188.93925 * 13 12 11 43 43 H 1.08998 * 109.29912 * 69.55978 * 13 12 11 44 44 H 0.97004 * 117.94746 * 199.07336 * 14 13 12 45 45 H 1.09000 * 109.46661 * 303.75530 * 19 17 2 46 46 H 1.08998 * 109.47417 * 63.75408 * 19 17 2 47 47 H 0.97001 * 119.99406 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4649 1.7034 1.4423 5 1 2.9269 0.9179 2.0404 6 6 1.2519 2.3553 2.1209 7 6 2.3087 3.2945 2.7188 8 7 3.1541 3.0030 1.5462 9 6 4.5580 2.8244 1.9405 10 1 4.6210 2.0581 2.7130 11 6 5.1046 4.1411 2.4925 12 6 6.6267 4.0182 2.6324 13 6 7.2402 3.9163 1.2354 14 7 6.5682 2.8831 0.4573 15 6 5.3609 2.3959 0.7460 16 8 4.8839 1.5658 0.0015 17 6 2.1389 -1.1672 0.0005 18 8 3.3487 -1.1689 0.0865 19 6 1.3893 -2.4701 -0.1058 20 16 2.5534 -3.8491 0.0333 21 6 1.4401 -5.2061 -0.1194 22 1 0.3836 -5.0255 -0.2531 23 6 1.9205 -6.5073 -0.0679 24 7 3.2079 -6.7274 0.0955 25 14 0.7401 -7.9460 -0.2306 26 1 0.6055 -8.3163 -1.6623 27 1 1.2653 -9.1059 0.5336 28 1 -0.5887 -7.5593 0.3079 29 1 -0.3633 0.0574 -1.0261 30 1 -0.3633 -0.9173 0.4633 31 1 -0.3634 0.8598 0.5627 32 1 1.6039 2.0309 -0.5051 33 1 3.1455 1.1410 -0.5226 34 1 0.5622 2.8412 1.4308 35 1 0.7528 1.7178 2.8507 36 1 2.7290 2.9336 3.6576 37 1 1.9849 4.3339 2.7732 38 1 4.6616 4.3439 3.4677 39 1 4.8636 4.9515 1.8045 40 1 6.8701 3.1231 3.2049 41 1 7.0217 4.8969 3.1421 42 1 8.2982 3.6700 1.3236 43 1 7.1377 4.8746 0.7262 44 1 7.0279 2.5278 -0.3196 45 1 0.6542 -2.5329 0.6966 46 1 0.8810 -2.5194 -1.0688 47 1 3.5437 -7.6367 0.1311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230815585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:39 Heat of formation + Delta-G solvation = -50.706798 kcal Electronic energy + Delta-G solvation = -28325.777314 eV Core-core repulsion = 24442.110109 eV Total energy + Delta-G solvation = -3883.667205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.17566 -40.71868 -39.91737 -37.47200 -36.43498 -34.59637 -33.98803 -31.85816 -31.02565 -29.24303 -27.86653 -27.68192 -27.19330 -24.92214 -24.09939 -23.21726 -20.94799 -20.55823 -20.08496 -19.48798 -18.39587 -17.93618 -17.68432 -17.16301 -16.99696 -16.90219 -16.84580 -15.91817 -15.76869 -15.65077 -15.18464 -14.99083 -14.71005 -14.60750 -14.35589 -14.18382 -14.04336 -13.75041 -13.50440 -13.44046 -13.21698 -13.14045 -12.89843 -12.81381 -12.61079 -12.44588 -12.39177 -12.14005 -11.96827 -11.74254 -11.64235 -11.29210 -11.15183 -10.78162 -10.60344 -10.26935 -10.04961 -9.98140 -9.52921 -8.68969 -8.35226 -6.14235 1.25439 1.41704 1.45341 1.55989 1.61872 1.68622 2.15404 2.27118 2.29054 2.98386 3.03859 3.29419 3.40694 3.58846 3.68516 3.79241 3.85682 3.87280 3.99942 4.16607 4.19959 4.26741 4.33885 4.35501 4.38360 4.47638 4.50245 4.65395 4.70790 4.76257 4.80207 4.84358 4.89451 4.92464 4.96234 5.00016 5.12273 5.19410 5.29017 5.30712 5.40101 5.64910 5.89342 6.00643 6.18885 6.37548 6.40698 7.05144 7.27254 7.35665 8.74331 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.002642 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.050176 B =10594.872753 C =11621.525209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.125 3.875 4 C 0.029 3.971 5 H 0.040 0.960 6 C -0.133 4.133 7 C 0.010 3.990 8 N -0.459 5.459 9 C 0.039 3.961 10 H 0.062 0.938 11 C -0.106 4.106 12 C -0.133 4.133 13 C 0.103 3.897 14 N -0.719 5.719 15 C 0.507 3.493 16 O -0.570 6.570 17 C 0.520 3.480 18 O -0.554 6.554 19 C -0.119 4.119 20 S -0.158 6.158 21 C -0.544 4.544 22 H 0.083 0.917 23 C 0.011 3.989 24 N -0.913 5.913 25 Si 1.002 2.998 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.256 1.256 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.398 0.602 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 29.947 7.580 30.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C 0.002 3.998 4 C -0.082 4.082 5 H 0.058 0.942 6 C -0.170 4.170 7 C -0.118 4.118 8 N -0.183 5.183 9 C -0.074 4.074 10 H 0.079 0.921 11 C -0.143 4.143 12 C -0.172 4.172 13 C -0.020 4.020 14 N -0.371 5.371 15 C 0.293 3.707 16 O -0.449 6.449 17 C 0.307 3.693 18 O -0.431 6.431 19 C -0.270 4.270 20 S 0.069 5.931 21 C -0.692 4.692 22 H 0.101 0.899 23 C -0.193 4.193 24 N -0.550 5.550 25 Si 0.823 3.177 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.180 1.180 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.233 0.767 45 H 0.126 0.874 46 H 0.121 0.879 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.171 30.001 7.044 30.817 hybrid contribution -1.007 -2.104 -0.080 2.334 sum -0.836 27.897 6.964 28.765 Atomic orbital electron populations 1.22113 0.77158 1.04575 1.03240 1.47794 1.08264 1.04669 1.73514 1.21568 0.98223 0.83554 0.96425 1.23501 0.96094 0.91471 0.97108 0.94178 1.23317 0.95685 0.97895 1.00122 1.23766 0.92956 1.02549 0.92518 1.68808 0.99435 1.19377 1.30636 1.22120 0.91549 1.00260 0.93428 0.92075 1.21652 0.96002 0.94127 1.02555 1.21919 0.94411 1.04666 0.96156 1.21685 0.97339 0.90858 0.92096 1.45580 1.17914 1.41598 1.32027 1.20450 0.82228 0.80856 0.87169 1.90756 1.68745 1.34301 1.51051 1.20239 0.87434 0.85540 0.76064 1.90740 1.15791 1.87211 1.49343 1.23367 1.02591 0.95084 1.06007 1.85647 1.14421 0.97417 1.95586 1.23187 0.95570 0.92582 1.57821 0.89918 1.26190 0.97652 1.01731 0.93771 1.70209 1.14852 1.22331 1.47558 0.84908 0.77962 0.76119 0.78687 1.19309 1.20160 1.17993 0.91311 0.90683 0.88247 0.88969 0.90081 0.87121 0.89787 0.90708 0.86766 0.88768 0.89837 0.91854 0.86172 0.88710 0.89899 0.76658 0.87395 0.87939 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 10.26 127.77 1.31 2.83 16 2 N -0.61 -19.77 2.87 -846.75 -2.43 -22.20 16 3 C 0.12 3.94 5.16 86.38 0.45 4.38 16 4 C 0.03 0.78 2.61 42.18 0.11 0.89 16 5 H 0.04 1.41 7.62 -2.39 -0.02 1.39 16 6 C -0.13 -2.22 7.14 30.94 0.22 -2.00 16 7 C 0.01 0.15 6.77 83.57 0.57 0.71 16 8 N -0.46 -10.10 5.86 -882.61 -5.17 -15.28 16 9 C 0.04 0.85 1.82 43.96 0.08 0.93 16 10 H 0.06 1.54 7.54 -2.39 -0.02 1.52 16 11 C -0.11 -1.27 5.07 30.67 0.16 -1.12 16 12 C -0.13 -1.17 6.02 30.68 0.18 -0.99 16 13 C 0.10 1.07 7.17 86.49 0.62 1.69 16 14 N -0.72 -14.79 5.45 -467.32 -2.55 -17.34 16 15 C 0.51 14.54 7.45 87.71 0.65 15.19 16 16 O -0.57 -22.85 13.33 -3.05 -0.04 -22.89 16 17 C 0.52 22.86 7.67 87.66 0.67 23.53 16 18 O -0.55 -30.09 15.51 -3.04 -0.05 -30.14 16 19 C -0.12 -5.31 4.90 71.24 0.35 -4.97 16 20 S -0.16 -9.42 20.58 -56.49 -1.16 -10.59 16 21 C -0.54 -32.46 9.50 67.95 0.65 -31.81 16 22 H 0.08 4.57 7.80 -2.91 -0.02 4.55 16 23 C 0.01 0.65 5.49 84.86 0.47 1.11 16 24 N -0.91 -58.15 13.22 21.65 0.29 -57.87 16 25 Si 1.00 44.97 29.55 68.60 2.03 47.00 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.07 1.61 6.24 -2.39 -0.01 1.60 16 31 H 0.10 1.48 7.11 -2.39 -0.02 1.46 16 32 H 0.09 2.39 7.95 -2.38 -0.02 2.37 16 33 H 0.08 3.37 4.28 -2.39 -0.01 3.36 16 34 H 0.11 1.49 7.95 -2.39 -0.02 1.47 16 35 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.07 1.01 7.84 -2.39 -0.02 0.99 16 37 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 0.79 7.75 -2.38 -0.02 0.77 16 39 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 40 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 41 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.40 8.30 8.80 -92.71 -0.82 7.49 16 45 H 0.11 4.28 7.05 -2.40 -0.02 4.26 16 46 H 0.10 4.23 8.14 -2.40 -0.02 4.21 16 47 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -91.16 384.24 -2.44 -93.60 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.17 Total: 25.31 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.48 Total: 10.39 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -9.87 Total: -112.69 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -0.09 Total: -53.03 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: -9.42 SS G_CDS: -1.16 Total: -10.59 kcal Total: -91.16 -2.44 -93.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.894 kcal (2) G-P(sol) polarization free energy of solvation -91.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds