Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99756 * 2 1 4 4 C 1.52998 * 109.47470 * 270.00188 * 3 2 1 5 5 H 1.09000 * 112.95468 * 74.66835 * 4 3 2 6 6 C 1.53935 * 113.76048 * 206.31581 * 4 3 2 7 7 C 1.53929 * 86.34185 * 138.03711 * 6 4 3 8 8 N 1.47963 * 113.76031 * 303.02187 * 4 3 2 9 9 C 1.46901 * 110.99766 * 108.09744 * 8 4 3 10 10 C 1.50697 * 109.46750 * 170.00050 * 9 8 4 11 11 O 1.21281 * 120.00138 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99718 * 179.97438 * 10 9 8 13 13 C 1.47067 * 136.06130 * 359.63080 * 12 10 9 14 14 C 1.53239 * 88.08320 * 207.20008 * 13 12 10 15 15 C 1.47072 * 136.05658 * 180.02562 * 12 10 9 16 16 C 1.34771 * 120.00128 * 180.02562 * 2 1 3 17 17 O 1.21288 * 119.99896 * 179.97438 * 16 2 1 18 18 C 1.50703 * 120.00048 * 359.97438 * 16 2 1 19 19 S 1.81000 * 109.46826 * 180.02562 * 18 16 2 20 20 C 1.76205 * 99.99509 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00431 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99884 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99752 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 180.27840 * 22 20 19 25 25 H 1.48497 * 109.47173 * 179.72423 * 24 22 20 26 26 H 1.48506 * 109.46866 * 299.71959 * 24 22 20 27 27 H 1.48501 * 109.47438 * 59.72080 * 24 22 20 28 28 H 1.08996 * 109.46996 * 269.99683 * 1 2 3 29 29 H 1.09003 * 109.47400 * 29.99677 * 1 2 3 30 30 H 1.09003 * 109.46993 * 149.99446 * 1 2 3 31 31 H 1.09000 * 109.47071 * 30.00398 * 3 2 1 32 32 H 1.09007 * 109.46858 * 150.00118 * 3 2 1 33 33 H 1.09003 * 113.73432 * 252.39707 * 6 4 3 34 34 H 1.08997 * 113.73067 * 23.67672 * 6 4 3 35 35 H 1.08998 * 113.75913 * 90.59508 * 7 6 4 36 36 H 1.09000 * 113.76321 * 221.85075 * 7 6 4 37 37 H 1.08997 * 109.47358 * 289.99880 * 9 8 4 38 38 H 1.08996 * 109.47302 * 50.00107 * 9 8 4 39 39 H 1.08993 * 113.46614 * 321.93550 * 13 12 10 40 40 H 1.08998 * 113.46202 * 92.37279 * 13 12 10 41 41 H 1.08999 * 114.32490 * 220.46687 * 14 13 12 42 42 H 1.09005 * 114.01135 * 87.71908 * 14 13 12 43 43 H 1.09001 * 113.46801 * 267.62518 * 15 12 10 44 44 H 1.09005 * 113.46496 * 38.00301 * 15 12 10 45 45 H 1.09000 * 109.46926 * 60.00592 * 18 16 2 46 46 H 1.09001 * 109.47144 * 300.00330 * 18 16 2 47 47 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 1 1.5599 2.1006 -1.9317 6 6 3.6920 2.6085 -1.6062 7 6 3.9987 1.7862 -2.8707 8 7 3.1873 0.7125 -2.2506 9 6 2.3027 0.0810 -3.2389 10 6 3.1259 -0.7398 -4.1978 11 8 4.3308 -0.7939 -4.0702 12 7 2.5230 -1.4147 -5.1966 13 6 1.1415 -1.6033 -5.6643 14 6 1.5747 -2.9572 -6.2366 15 6 2.9566 -2.2922 -6.2943 16 6 2.1389 -1.1671 -0.0005 17 8 3.3518 -1.1671 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5617 -3.8479 -0.0005 20 6 1.4416 -5.2081 -0.0013 21 1 0.3763 -5.0305 -0.0020 22 6 1.9284 -6.5080 -0.0010 23 7 3.2268 -6.7245 -0.0006 24 14 0.7410 -7.9500 -0.0097 25 1 1.5071 -9.2221 -0.0146 26 1 -0.1159 -7.8929 1.2020 27 1 -0.1123 -7.8814 -1.2231 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5139 33 1 3.4537 3.6527 -1.8090 34 1 4.4301 2.4861 -0.8135 35 1 3.5589 2.1973 -3.7793 36 1 5.0528 1.5334 -2.9853 37 1 1.5891 -0.5650 -2.7275 38 1 1.7646 0.8522 -3.7900 39 1 0.4169 -1.6878 -4.8545 40 1 0.8399 -0.8859 -6.4274 41 1 1.1489 -3.1890 -7.2128 42 1 1.5050 -3.7816 -5.5268 43 1 3.1437 -1.7603 -7.2272 44 1 3.7727 -2.9604 -6.0193 45 1 0.7585 -2.5299 -0.8903 46 1 0.7590 -2.5302 0.8897 47 1 3.5670 -7.6330 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230816108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = -5.671888 kcal Electronic energy + Delta-G solvation = -28835.385791 eV Core-core repulsion = 24953.671447 eV Total energy + Delta-G solvation = -3881.714345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.72521 -40.90692 -40.00480 -38.55962 -36.31431 -34.58659 -32.74497 -31.60824 -30.44209 -29.15969 -27.68206 -27.16669 -27.08128 -25.84170 -24.33838 -22.86079 -20.78904 -20.39542 -19.94835 -19.47302 -18.16684 -17.93394 -17.42732 -17.28934 -17.03670 -16.93051 -16.87476 -16.19175 -15.92109 -15.82441 -15.39976 -14.82686 -14.53511 -14.27820 -14.14585 -14.04642 -13.79940 -13.53222 -13.48671 -13.41193 -13.17906 -13.11785 -13.01449 -12.87319 -12.71624 -12.55418 -12.40191 -12.30549 -11.94290 -11.72980 -11.72241 -11.63541 -11.12902 -10.83204 -10.65680 -10.22062 -9.79760 -9.72846 -9.32420 -8.66432 -8.33692 -6.12477 1.26882 1.42541 1.46827 1.56300 1.58466 1.76480 1.81982 2.20995 2.29181 2.95667 2.99771 3.31866 3.35047 3.48813 3.64028 3.80427 3.85215 4.03528 4.10440 4.18792 4.20378 4.24149 4.26359 4.32414 4.37186 4.43717 4.44408 4.48808 4.54129 4.54666 4.63932 4.75118 4.78184 4.90046 4.94524 4.96256 4.97704 5.00743 5.25340 5.28919 5.39460 5.43163 5.77934 6.09552 6.18812 6.46309 6.70839 7.06255 7.14427 7.41094 8.75392 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009083 B = 0.004368 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.791172 B = 6407.989251 C = 8326.469362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.611 5.611 3 C 0.135 3.865 4 C 0.021 3.979 5 H 0.112 0.888 6 C -0.118 4.118 7 C 0.008 3.992 8 N -0.479 5.479 9 C 0.028 3.972 10 C 0.528 3.472 11 O -0.578 6.578 12 N -0.666 5.666 13 C 0.103 3.897 14 C -0.143 4.143 15 C 0.091 3.909 16 C 0.528 3.472 17 O -0.542 6.542 18 C -0.118 4.118 19 S -0.159 6.159 20 C -0.544 4.544 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.914 5.914 24 Si 0.999 3.001 25 H -0.280 1.280 26 H -0.260 1.260 27 H -0.258 1.258 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.044 0.956 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.370 20.857 -11.353 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.346 5.346 3 C 0.012 3.988 4 C -0.089 4.089 5 H 0.130 0.870 6 C -0.156 4.156 7 C -0.121 4.121 8 N -0.203 5.203 9 C -0.103 4.103 10 C 0.319 3.681 11 O -0.457 6.457 12 N -0.403 5.403 13 C -0.018 4.018 14 C -0.181 4.181 15 C -0.032 4.032 16 C 0.314 3.686 17 O -0.418 6.418 18 C -0.270 4.270 19 S 0.068 5.932 20 C -0.691 4.691 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.551 5.551 24 Si 0.820 3.180 25 H -0.205 1.205 26 H -0.185 1.185 27 H -0.183 1.183 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.063 0.937 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.402 20.279 -10.783 25.642 hybrid contribution -1.510 -0.943 -0.339 1.812 sum -12.912 19.336 -11.122 25.774 Atomic orbital electron populations 1.22057 0.77258 1.04445 1.03164 1.47707 1.07990 1.04598 1.74297 1.21537 0.97491 0.84621 0.95165 1.24087 0.97614 0.91459 0.95748 0.87033 1.23237 0.96390 0.99209 0.96777 1.23766 0.99308 0.91527 0.97465 1.68656 1.15357 1.21035 1.15258 1.22352 0.95362 0.98880 0.93684 1.20723 0.87763 0.78944 0.80698 1.90688 1.17109 1.64377 1.73507 1.49942 1.12832 1.49095 1.28413 1.23237 0.82865 0.96549 0.99128 1.23283 0.94486 0.96369 1.03946 1.23180 0.98869 0.91195 0.89921 1.19933 0.87341 0.85253 0.76030 1.90738 1.15564 1.87052 1.48403 1.23339 1.02431 0.95796 1.05416 1.85825 1.12859 0.97544 1.96950 1.23148 0.94487 0.92647 1.58846 0.89963 1.26173 0.97552 1.01768 0.93717 1.70221 1.14374 1.22400 1.48103 0.85002 0.77569 0.75722 0.79686 1.20527 1.18472 1.18280 0.91429 0.87672 0.91536 0.85833 0.92616 0.87200 0.90337 0.90311 0.92684 0.89317 0.88601 0.89933 0.86019 0.85293 0.90838 0.87174 0.93709 0.88442 0.88138 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 10.24 127.77 1.31 2.47 16 2 N -0.61 -16.03 2.83 -846.73 -2.40 -18.43 16 3 C 0.13 2.93 5.59 86.38 0.48 3.42 16 4 C 0.02 0.41 3.58 45.02 0.16 0.57 16 5 H 0.11 1.40 7.79 -2.39 -0.02 1.38 16 6 C -0.12 -2.21 7.84 31.23 0.25 -1.97 16 7 C 0.01 0.21 6.77 86.36 0.59 0.79 16 8 N -0.48 -14.65 4.66 -885.25 -4.12 -18.78 16 9 C 0.03 0.79 5.14 85.56 0.44 1.23 16 10 C 0.53 18.90 7.89 87.66 0.69 19.59 16 11 O -0.58 -27.22 16.34 -3.03 -0.05 -27.27 16 12 N -0.67 -18.54 3.69 -859.03 -3.17 -21.72 16 13 C 0.10 1.66 8.40 83.09 0.70 2.35 16 14 C -0.14 -2.45 8.48 30.83 0.26 -2.19 16 15 C 0.09 2.13 8.61 83.17 0.72 2.84 16 16 C 0.53 21.06 6.99 87.66 0.61 21.67 16 17 O -0.54 -27.67 14.88 -3.06 -0.05 -27.72 16 18 C -0.12 -5.03 4.71 71.24 0.34 -4.70 16 19 S -0.16 -9.41 20.57 -56.49 -1.16 -10.57 16 20 C -0.54 -32.03 9.50 67.96 0.65 -31.38 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.72 5.49 84.86 0.47 1.19 16 23 N -0.91 -58.53 13.22 21.65 0.29 -58.25 16 24 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 30 H 0.07 1.15 6.44 -2.39 -0.02 1.14 16 31 H 0.12 1.54 8.07 -2.39 -0.02 1.52 16 32 H 0.06 1.64 7.15 -2.38 -0.02 1.62 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.75 7.92 -2.39 -0.02 1.73 16 35 H 0.08 1.67 7.78 -2.39 -0.02 1.65 16 36 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 37 H 0.09 2.59 7.90 -2.39 -0.02 2.57 16 38 H 0.10 1.81 7.69 -2.39 -0.02 1.79 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 43 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.10 3.76 7.40 -2.39 -0.02 3.74 16 46 H 0.10 3.89 8.11 -2.39 -0.02 3.87 16 47 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 Total: -1.00 -98.25 399.99 -0.04 -98.28 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.95 Total: 22.19 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 7.65 Total: 15.89 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -9.41 Total: -117.17 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -0.10 Total: -54.99 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -9.41 SS G_CDS: -1.16 Total: -10.57 kcal Total: -98.25 -0.04 -98.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.610 kcal (2) G-P(sol) polarization free energy of solvation -98.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds