Wall clock time and date at job start Sat Apr 11 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99928 * 2 1 4 4 N 1.46504 * 109.47555 * 125.00215 * 3 2 1 5 5 C 1.34767 * 120.00191 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00535 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99975 * 179.97438 * 5 4 3 8 8 N 1.46900 * 109.47425 * 180.02562 * 7 5 4 9 9 C 1.47475 * 111.00019 * 94.03076 * 8 7 5 10 10 C 1.53626 * 87.95238 * 138.65406 * 9 8 7 11 11 C 1.47482 * 111.00108 * 190.00439 * 8 7 5 12 12 H 1.08998 * 113.47151 * 336.12147 * 11 8 7 13 13 C 1.53002 * 113.47722 * 106.52976 * 11 8 7 14 14 N 1.46494 * 109.46910 * 303.89290 * 13 11 8 15 15 C 1.46495 * 120.00315 * 269.99752 * 14 13 11 16 16 C 1.34778 * 120.00024 * 90.00618 * 14 13 11 17 17 O 1.21282 * 120.00178 * 359.97438 * 16 14 13 18 18 C 1.50703 * 120.00172 * 179.97438 * 16 14 13 19 19 S 1.81000 * 109.47042 * 179.97438 * 18 16 14 20 20 C 1.76199 * 99.99871 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99752 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 0.28020 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71945 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72142 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72250 * 24 22 20 28 28 H 1.07999 * 119.99560 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00033 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00522 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47030 * 5.00065 * 3 2 1 32 32 H 1.09005 * 109.47231 * 245.00152 * 3 2 1 33 33 H 0.97000 * 119.99215 * 0.02562 * 4 3 2 34 34 H 1.09004 * 109.47047 * 60.00005 * 7 5 4 35 35 H 1.08998 * 109.47409 * 300.00142 * 7 5 4 36 36 H 1.09000 * 113.47429 * 253.47170 * 9 8 7 37 37 H 1.08997 * 113.47584 * 23.93607 * 9 8 7 38 38 H 1.08998 * 114.20478 * 220.39208 * 10 9 8 39 39 H 1.09006 * 114.17334 * 87.65083 * 10 9 8 40 40 H 1.08996 * 109.47032 * 183.89608 * 13 11 8 41 41 H 1.08997 * 109.46897 * 63.89392 * 13 11 8 42 42 H 1.08998 * 109.47580 * 270.00686 * 15 14 13 43 43 H 1.09003 * 109.47270 * 30.00531 * 15 14 13 44 44 H 1.09009 * 109.47193 * 150.00280 * 15 14 13 45 45 H 1.09005 * 109.47194 * 59.99652 * 18 16 14 46 46 H 1.09000 * 109.46904 * 299.99694 * 18 16 14 47 47 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3320 1.1314 5 6 3.7783 2.4091 1.3334 6 8 3.7144 3.3561 0.5783 7 6 4.7348 2.4369 2.4975 8 7 5.4685 3.7096 2.4982 9 6 4.8057 4.7013 3.3653 10 6 6.1989 5.1172 3.8614 11 6 6.5758 3.6809 3.4720 12 1 6.4280 2.9600 4.2762 13 6 7.9563 3.5677 2.8222 14 7 7.9969 2.3799 1.9657 15 6 8.4225 1.0920 2.5191 16 6 7.6429 2.4721 0.6685 17 8 7.2903 3.5382 0.2104 18 6 7.6853 1.2503 -0.2128 19 16 7.1563 1.6946 -1.8857 20 6 7.2986 0.1272 -2.6779 21 1 7.6327 -0.7331 -2.1169 22 6 6.9803 -0.0022 -4.0228 23 7 7.0871 -1.1731 -4.6147 24 14 6.4085 1.4870 -4.9947 25 1 4.9293 1.5912 -4.9161 26 1 7.0221 2.7142 -4.4266 27 1 6.8196 1.3396 -6.4140 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.0452 0.5745 1.7351 34 1 5.4401 1.6106 2.4081 35 1 4.1769 2.3392 3.4287 36 1 4.2891 5.4855 2.8120 37 1 4.1852 4.2536 4.1416 38 1 6.2508 5.3177 4.9315 39 1 6.6784 5.8847 3.2537 40 1 8.7171 3.4824 3.5980 41 1 8.1486 4.4561 2.2208 42 1 9.5014 0.9865 2.4059 43 1 8.1620 1.0470 3.5766 44 1 7.9205 0.2840 1.9866 45 1 7.0167 0.4890 0.1892 46 1 8.7026 0.8604 -0.2445 47 1 6.8650 -1.2634 -5.5547 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230816208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:55 Heat of formation + Delta-G solvation = 4.735740 kcal Electronic energy + Delta-G solvation = -28730.845511 eV Core-core repulsion = 24849.582475 eV Total energy + Delta-G solvation = -3881.263036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75145 -39.17299 -38.62396 -35.63212 -35.08933 -32.76828 -32.37617 -31.40047 -30.16354 -28.02943 -26.77339 -26.21222 -25.53091 -24.36854 -23.27077 -20.57741 -19.89533 -19.86185 -19.14763 -17.57510 -17.04004 -16.64855 -16.39214 -16.23701 -15.70666 -15.56625 -15.23623 -14.89553 -14.74571 -14.42294 -13.83160 -13.73525 -13.63753 -13.19262 -13.08743 -12.97052 -12.90911 -12.69815 -12.38314 -12.25251 -12.02980 -11.84017 -11.61638 -11.46746 -11.24159 -11.17814 -11.14448 -10.94561 -10.68912 -10.49419 -9.92953 -9.78362 -9.47848 -9.17319 -8.93495 -8.85339 -8.83666 -8.35555 -8.31842 -6.80162 -6.23602 -3.92487 1.99640 2.83900 2.93208 3.22730 3.24588 3.35984 3.40091 3.59045 3.68735 4.01815 4.32429 4.40178 4.58709 4.72459 4.74880 4.86636 4.97008 5.00695 5.04492 5.07207 5.11535 5.16009 5.16551 5.21750 5.26126 5.40565 5.48233 5.53469 5.56651 5.66405 5.73441 5.76824 5.85804 5.90728 5.93031 6.04075 6.07655 6.25012 6.43120 6.43720 6.66819 6.75155 6.93962 7.64719 7.66752 7.99560 8.45744 8.52332 8.74820 9.23888 10.85636 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007949 B = 0.004997 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3521.768430 B = 5602.337770 C = 7950.572486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.165 4.165 3 C 0.147 3.853 4 N -0.734 5.734 5 C 0.512 3.488 6 O -0.498 6.498 7 C 0.004 3.996 8 N -0.416 5.416 9 C -0.003 4.003 10 C -0.134 4.134 11 C 0.008 3.992 12 H 0.074 0.926 13 C 0.137 3.863 14 N -0.626 5.626 15 C 0.080 3.920 16 C 0.527 3.473 17 O -0.481 6.481 18 C -0.119 4.119 19 S -0.135 6.135 20 C -0.520 4.520 21 H 0.085 0.915 22 C 0.097 3.903 23 N -0.883 5.883 24 Si 0.854 3.146 25 H -0.267 1.267 26 H -0.235 1.235 27 H -0.275 1.275 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.395 0.605 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 3.921 22.745 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.184 4.184 3 C 0.024 3.976 4 N -0.389 5.389 5 C 0.297 3.703 6 O -0.370 6.370 7 C -0.128 4.128 8 N -0.138 5.138 9 C -0.132 4.132 10 C -0.172 4.172 11 C -0.103 4.103 12 H 0.092 0.908 13 C 0.013 3.987 14 N -0.364 5.364 15 C -0.064 4.064 16 C 0.313 3.687 17 O -0.352 6.352 18 C -0.270 4.270 19 S 0.092 5.908 20 C -0.668 4.668 21 H 0.103 0.897 22 C -0.111 4.111 23 N -0.520 5.520 24 Si 0.679 3.321 25 H -0.193 1.193 26 H -0.158 1.158 27 H -0.200 1.200 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.228 0.772 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.092 6.248 20.564 22.339 hybrid contribution -0.091 -2.010 1.062 2.275 sum -6.183 4.237 21.627 22.889 Atomic orbital electron populations 1.23900 0.95748 1.02087 0.99700 1.23076 0.96165 0.98465 1.00670 1.20389 0.91678 0.94958 0.90611 1.45898 1.41885 1.20041 1.31030 1.20333 0.80704 0.82704 0.86591 1.90764 1.65708 1.35058 1.45496 1.22572 0.97289 0.96433 0.96489 1.68984 1.04437 1.04472 1.35957 1.23859 0.96510 0.97591 0.95200 1.23155 0.96709 0.96309 1.01046 1.23912 0.94896 0.97446 0.94080 0.90787 1.21332 0.94093 0.89785 0.93459 1.47746 1.69452 1.09291 1.09886 1.21747 1.00117 0.85631 0.98916 1.20122 0.76899 0.90425 0.81272 1.90752 1.42713 1.29285 1.72452 1.23291 1.04822 0.98655 1.00203 1.84958 1.87989 1.16868 1.00993 1.22354 1.52019 0.93940 0.98442 0.89667 1.24673 0.93832 0.96041 0.96576 1.69947 1.47019 1.23044 1.12011 0.86768 0.80613 0.84669 0.80052 1.19254 1.15843 1.20046 0.88069 0.88402 0.86542 0.91479 0.89869 0.77152 0.88566 0.91689 0.89355 0.91921 0.90642 0.88394 0.90660 0.89182 0.92749 0.91769 0.91032 0.89575 0.89123 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 14.32 29.01 0.42 -1.25 16 2 C -0.17 -1.82 9.63 -36.03 -0.35 -2.17 16 3 C 0.15 2.02 6.11 -5.19 -0.03 1.99 16 4 N -0.73 -9.63 5.55 -61.47 -0.34 -9.97 16 5 C 0.51 8.24 7.90 -10.99 -0.09 8.16 16 6 O -0.50 -10.63 16.43 5.55 0.09 -10.54 16 7 C 0.00 0.05 5.30 -4.98 -0.03 0.03 16 8 N -0.42 -5.74 4.45 -237.76 -1.06 -6.79 16 9 C 0.00 -0.03 7.71 -7.49 -0.06 -0.09 16 10 C -0.13 -1.20 8.01 -26.14 -0.21 -1.41 16 11 C 0.01 0.08 3.33 -71.43 -0.24 -0.16 16 12 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 13 C 0.14 1.54 5.57 -4.04 -0.02 1.52 16 14 N -0.63 -8.40 2.64 -181.58 -0.48 -8.88 16 15 C 0.08 0.77 10.24 59.84 0.61 1.38 16 16 C 0.53 9.91 7.20 -10.98 -0.08 9.84 16 17 O -0.48 -11.08 14.86 5.56 0.08 -11.00 16 18 C -0.12 -2.44 4.71 36.01 0.17 -2.27 16 19 S -0.13 -3.58 18.54 -107.50 -1.99 -5.58 16 20 C -0.52 -15.33 10.04 30.94 0.31 -15.02 16 21 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 22 C 0.10 2.91 5.50 -17.43 -0.10 2.81 16 23 N -0.88 -27.07 13.97 55.49 0.78 -26.29 16 24 Si 0.85 22.72 27.74 -169.99 -4.72 18.01 16 25 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.23 -6.31 6.73 56.52 0.38 -5.93 16 27 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 28 H 0.10 0.80 8.06 -52.49 -0.42 0.37 16 29 H 0.10 0.87 7.84 -52.49 -0.41 0.46 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.40 3.85 8.46 -40.82 -0.35 3.51 16 34 H 0.10 1.17 7.90 -51.93 -0.41 0.76 16 35 H 0.07 0.61 7.30 -51.93 -0.38 0.23 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.56 7.42 -51.93 -0.39 0.17 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.98 7.95 -51.93 -0.41 0.56 16 40 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 41 H 0.09 1.24 7.18 -51.93 -0.37 0.87 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 44 H 0.07 0.73 6.44 -51.92 -0.33 0.39 16 45 H 0.09 1.65 7.40 -51.91 -0.38 1.27 16 46 H 0.09 1.75 8.11 -51.92 -0.42 1.33 16 47 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 403.57 15.07 6.08 6.08 Total: -1.00 -38.95 403.57 -8.87 -47.82 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.62 Total: 3.78 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 0.31 Total: 3.37 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -1.10 Total: -51.94 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.17 Total: -21.54 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.72 Total: 18.01 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.95 -8.87 -47.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.551 kcal (2) G-P(sol) polarization free energy of solvation -38.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds