Wall clock time and date at job start Sat Apr 11 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99928 * 2 1 4 4 N 1.46504 * 109.47555 * 125.00215 * 3 2 1 5 5 C 1.34767 * 120.00191 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00535 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99975 * 179.97438 * 5 4 3 8 8 N 1.46900 * 109.47425 * 180.02562 * 7 5 4 9 9 C 1.47475 * 111.00019 * 94.03076 * 8 7 5 10 10 C 1.53626 * 87.95238 * 138.65406 * 9 8 7 11 11 C 1.47482 * 111.00108 * 190.00439 * 8 7 5 12 12 H 1.08998 * 113.47151 * 336.12147 * 11 8 7 13 13 C 1.53002 * 113.47722 * 106.52976 * 11 8 7 14 14 N 1.46494 * 109.46910 * 303.89290 * 13 11 8 15 15 C 1.46495 * 120.00315 * 269.99752 * 14 13 11 16 16 C 1.34778 * 120.00024 * 90.00618 * 14 13 11 17 17 O 1.21282 * 120.00178 * 359.97438 * 16 14 13 18 18 C 1.50703 * 120.00172 * 179.97438 * 16 14 13 19 19 S 1.81000 * 109.47042 * 179.97438 * 18 16 14 20 20 C 1.76199 * 99.99871 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99752 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 0.28020 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71945 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72142 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72250 * 24 22 20 28 28 H 1.07999 * 119.99560 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00033 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00522 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47030 * 5.00065 * 3 2 1 32 32 H 1.09005 * 109.47231 * 245.00152 * 3 2 1 33 33 H 0.97000 * 119.99215 * 0.02562 * 4 3 2 34 34 H 1.09004 * 109.47047 * 60.00005 * 7 5 4 35 35 H 1.08998 * 109.47409 * 300.00142 * 7 5 4 36 36 H 1.09000 * 113.47429 * 253.47170 * 9 8 7 37 37 H 1.08997 * 113.47584 * 23.93607 * 9 8 7 38 38 H 1.08998 * 114.20478 * 220.39208 * 10 9 8 39 39 H 1.09006 * 114.17334 * 87.65083 * 10 9 8 40 40 H 1.08996 * 109.47032 * 183.89608 * 13 11 8 41 41 H 1.08997 * 109.46897 * 63.89392 * 13 11 8 42 42 H 1.08998 * 109.47580 * 270.00686 * 15 14 13 43 43 H 1.09003 * 109.47270 * 30.00531 * 15 14 13 44 44 H 1.09009 * 109.47193 * 150.00280 * 15 14 13 45 45 H 1.09005 * 109.47194 * 59.99652 * 18 16 14 46 46 H 1.09000 * 109.46904 * 299.99694 * 18 16 14 47 47 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3320 1.1314 5 6 3.7783 2.4091 1.3334 6 8 3.7144 3.3561 0.5783 7 6 4.7348 2.4369 2.4975 8 7 5.4685 3.7096 2.4982 9 6 4.8057 4.7013 3.3653 10 6 6.1989 5.1172 3.8614 11 6 6.5758 3.6809 3.4720 12 1 6.4280 2.9600 4.2762 13 6 7.9563 3.5677 2.8222 14 7 7.9969 2.3799 1.9657 15 6 8.4225 1.0920 2.5191 16 6 7.6429 2.4721 0.6685 17 8 7.2903 3.5382 0.2104 18 6 7.6853 1.2503 -0.2128 19 16 7.1563 1.6946 -1.8857 20 6 7.2986 0.1272 -2.6779 21 1 7.6327 -0.7331 -2.1169 22 6 6.9803 -0.0022 -4.0228 23 7 7.0871 -1.1731 -4.6147 24 14 6.4085 1.4870 -4.9947 25 1 4.9293 1.5912 -4.9161 26 1 7.0221 2.7142 -4.4266 27 1 6.8196 1.3396 -6.4140 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.0452 0.5745 1.7351 34 1 5.4401 1.6106 2.4081 35 1 4.1769 2.3392 3.4287 36 1 4.2891 5.4855 2.8120 37 1 4.1852 4.2536 4.1416 38 1 6.2508 5.3177 4.9315 39 1 6.6784 5.8847 3.2537 40 1 8.7171 3.4824 3.5980 41 1 8.1486 4.4561 2.2208 42 1 9.5014 0.9865 2.4059 43 1 8.1620 1.0470 3.5766 44 1 7.9205 0.2840 1.9866 45 1 7.0167 0.4890 0.1892 46 1 8.7026 0.8604 -0.2445 47 1 6.8650 -1.2634 -5.5547 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230816208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:54 Heat of formation + Delta-G solvation = -25.600832 kcal Electronic energy + Delta-G solvation = -28732.161003 eV Core-core repulsion = 24849.582475 eV Total energy + Delta-G solvation = -3882.578529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70380 -40.46392 -39.81107 -36.74041 -36.32156 -34.69258 -33.83085 -32.38579 -31.41146 -29.17118 -27.86171 -27.76621 -27.14653 -25.31158 -24.22251 -21.70254 -20.85727 -20.80252 -20.42532 -19.50952 -18.11425 -17.89442 -17.56674 -17.30283 -17.18416 -16.85853 -16.59971 -16.30632 -15.85455 -15.75455 -15.48408 -14.98438 -14.82622 -14.64074 -14.30616 -14.15883 -14.05226 -13.85500 -13.45636 -13.39018 -13.32844 -13.13902 -13.05657 -12.84581 -12.64824 -12.46711 -12.26973 -12.10539 -11.98683 -11.90273 -11.52530 -11.20646 -11.02446 -10.68306 -10.51977 -10.47226 -10.02408 -9.76962 -9.34577 -8.98724 -8.54865 -6.22546 0.97239 1.14624 1.24932 1.43328 1.52871 1.72604 1.79073 2.16858 2.21697 2.33761 2.72129 2.83729 3.15349 3.56626 3.73281 3.76716 3.83733 3.96804 4.08064 4.13582 4.18170 4.23438 4.28129 4.34218 4.34720 4.42178 4.47858 4.54525 4.57619 4.72686 4.74687 4.82538 4.95932 4.97791 5.01655 5.02779 5.27915 5.39102 5.43971 5.59827 5.68530 5.74653 5.76975 6.07594 6.13087 6.43697 6.63561 6.92148 7.37388 7.37933 8.57629 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007949 B = 0.004997 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3521.768430 B = 5602.337770 C = 7950.572486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.183 4.183 3 C 0.149 3.851 4 N -0.721 5.721 5 C 0.501 3.499 6 O -0.564 6.564 7 C 0.013 3.987 8 N -0.469 5.469 9 C -0.004 4.004 10 C -0.119 4.119 11 C 0.015 3.985 12 H 0.112 0.888 13 C 0.132 3.868 14 N -0.610 5.610 15 C 0.071 3.929 16 C 0.528 3.472 17 O -0.534 6.534 18 C -0.101 4.101 19 S -0.183 6.183 20 C -0.522 4.522 21 H 0.064 0.936 22 C 0.055 3.945 23 N -0.913 5.913 24 Si 0.904 3.096 25 H -0.269 1.269 26 H -0.244 1.244 27 H -0.254 1.254 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.414 0.586 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.633 3.030 26.457 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.201 4.201 3 C 0.025 3.975 4 N -0.375 5.375 5 C 0.288 3.712 6 O -0.441 6.441 7 C -0.119 4.119 8 N -0.192 5.192 9 C -0.133 4.133 10 C -0.157 4.157 11 C -0.095 4.095 12 H 0.130 0.870 13 C 0.010 3.990 14 N -0.345 5.345 15 C -0.071 4.071 16 C 0.314 3.686 17 O -0.409 6.409 18 C -0.252 4.252 19 S 0.044 5.956 20 C -0.670 4.670 21 H 0.082 0.918 22 C -0.151 4.151 23 N -0.552 5.552 24 Si 0.727 3.273 25 H -0.194 1.194 26 H -0.169 1.169 27 H -0.178 1.178 28 H 0.143 0.857 29 H 0.121 0.879 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.250 0.750 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.138 0.862 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.083 0.917 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.075 5.286 24.350 25.647 hybrid contribution -0.095 -1.786 0.057 1.789 sum -6.171 3.500 24.407 25.417 Atomic orbital electron populations 1.24146 0.95066 1.03438 0.96448 1.22905 0.96677 0.96978 1.03580 1.20263 0.91408 0.96782 0.89054 1.45857 1.40868 1.20045 1.30737 1.21236 0.80881 0.82119 0.86991 1.90731 1.67823 1.37514 1.47998 1.22573 0.96772 0.96406 0.96155 1.68952 1.06374 1.05411 1.38468 1.23902 0.97673 0.96620 0.95103 1.23064 0.94655 0.95230 1.02734 1.23996 0.92724 0.98897 0.93838 0.87043 1.21600 0.96527 0.87448 0.93461 1.47676 1.67209 1.11626 1.07990 1.22075 1.00823 0.83135 1.01115 1.19792 0.77087 0.88707 0.82991 1.90745 1.45622 1.30606 1.73931 1.23250 1.05426 1.00203 0.96337 1.85031 1.88733 1.15842 1.06035 1.22436 1.51437 0.94413 0.98696 0.91819 1.25369 0.94034 0.98209 0.97503 1.69998 1.47955 1.24436 1.12785 0.86015 0.79916 0.81517 0.79811 1.19401 1.16861 1.17755 0.85709 0.87926 0.85977 0.91853 0.94349 0.74984 0.88056 0.87720 0.92602 0.89133 0.86942 0.90415 0.86187 0.92520 0.91508 0.87462 0.91680 0.88236 0.87838 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 14.32 67.78 0.97 -1.66 16 2 C -0.18 -3.96 9.63 25.65 0.25 -3.71 16 3 C 0.15 4.32 6.11 85.63 0.52 4.84 16 4 N -0.72 -19.07 5.55 -466.77 -2.59 -21.66 16 5 C 0.50 16.43 7.90 87.66 0.69 17.12 16 6 O -0.56 -25.57 16.43 -3.05 -0.05 -25.62 16 7 C 0.01 0.29 5.30 85.56 0.45 0.74 16 8 N -0.47 -12.36 4.45 -906.13 -4.03 -16.39 16 9 C 0.00 -0.09 7.71 83.61 0.64 0.56 16 10 C -0.12 -1.81 8.01 30.98 0.25 -1.56 16 11 C 0.02 0.26 3.33 42.19 0.14 0.40 16 12 H 0.11 1.07 7.91 -2.39 -0.02 1.05 16 13 C 0.13 2.59 5.57 86.38 0.48 3.07 16 14 N -0.61 -14.80 2.64 -846.77 -2.23 -17.04 16 15 C 0.07 1.06 10.24 127.77 1.31 2.37 16 16 C 0.53 19.75 7.20 87.66 0.63 20.38 16 17 O -0.53 -25.36 14.86 -3.04 -0.05 -25.40 16 18 C -0.10 -4.14 4.71 71.24 0.34 -3.81 16 19 S -0.18 -10.04 18.54 -56.49 -1.05 -11.09 16 20 C -0.52 -31.59 10.04 67.96 0.68 -30.91 16 21 H 0.06 4.01 8.03 -2.91 -0.02 3.98 16 22 C 0.05 3.32 5.50 84.86 0.47 3.79 16 23 N -0.91 -56.72 13.97 21.65 0.30 -56.42 16 24 Si 0.90 47.99 27.74 68.60 1.90 49.90 16 25 H -0.27 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.24 -13.29 6.73 99.48 0.67 -12.62 16 27 H -0.25 -12.40 7.11 99.48 0.71 -11.70 16 28 H 0.12 1.60 8.06 -2.91 -0.02 1.57 16 29 H 0.10 1.67 7.84 -2.91 -0.02 1.65 16 30 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.06 1.84 7.79 -2.39 -0.02 1.82 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.41 7.59 8.46 -92.71 -0.78 6.81 16 34 H 0.10 2.19 7.90 -2.39 -0.02 2.17 16 35 H 0.11 1.53 7.30 -2.39 -0.02 1.51 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.30 7.42 -2.39 -0.02 1.28 16 38 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 1.51 7.95 -2.38 -0.02 1.49 16 40 H 0.12 1.31 8.07 -2.39 -0.02 1.29 16 41 H 0.06 1.53 7.18 -2.39 -0.02 1.51 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.11 0.78 8.07 -2.39 -0.02 0.76 16 44 H 0.06 1.10 6.44 -2.38 -0.02 1.09 16 45 H 0.10 3.78 7.40 -2.39 -0.02 3.76 16 46 H 0.10 3.95 8.11 -2.39 -0.02 3.93 16 47 H 0.28 15.92 8.31 -92.70 -0.77 15.14 16 Total: -1.00 -92.15 403.57 0.17 -91.98 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.14 Total: 20.13 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 7.83 Total: 11.61 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -8.55 Total: -111.51 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.10 Total: -51.02 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.90 Total: 49.90 kcal Atomic # 16 Polarization: -10.04 SS G_CDS: -1.05 Total: -11.09 kcal Total: -92.15 0.17 -91.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.380 kcal (2) G-P(sol) polarization free energy of solvation -92.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds