Wall clock time and date at job start Sat Apr 11 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99494 * 2 1 4 4 C 1.53000 * 109.47051 * 270.00210 * 3 2 1 5 5 H 1.08999 * 112.96010 * 74.67042 * 4 3 2 6 6 C 1.53937 * 113.76222 * 206.31768 * 4 3 2 7 7 C 1.53930 * 86.34293 * 138.03483 * 6 4 3 8 8 N 1.47966 * 113.75931 * 303.01908 * 4 3 2 9 9 C 1.46910 * 110.99835 * 108.09997 * 8 4 3 10 10 H 1.09007 * 110.43200 * 300.70686 * 9 8 4 11 11 C 1.54618 * 110.48612 * 178.16168 * 9 8 4 12 12 C 1.54833 * 101.60520 * 266.07945 * 11 9 8 13 13 N 1.46758 * 105.49469 * 334.56942 * 12 11 9 14 14 C 1.46501 * 124.35046 * 197.05821 * 13 12 11 15 15 C 1.34426 * 111.30199 * 17.03413 * 13 12 11 16 16 O 1.21278 * 124.94186 * 179.62509 * 15 13 12 17 17 C 1.34770 * 120.00322 * 180.02562 * 2 1 3 18 18 O 1.21283 * 120.00173 * 179.97438 * 17 2 1 19 19 C 1.50697 * 119.99926 * 359.97438 * 17 2 1 20 20 S 1.81003 * 109.47238 * 179.97438 * 19 17 2 21 21 C 1.76199 * 100.00162 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99721 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00102 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99922 * 359.72196 * 23 21 20 25 25 Si 1.86800 * 120.00292 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72275 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72122 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72158 * 25 23 21 29 29 H 1.09003 * 109.46897 * 269.99501 * 1 2 3 30 30 H 1.09001 * 109.47616 * 29.99602 * 1 2 3 31 31 H 1.09008 * 109.46988 * 150.00350 * 1 2 3 32 32 H 1.09000 * 109.47531 * 29.99866 * 3 2 1 33 33 H 1.08999 * 109.46980 * 150.00725 * 3 2 1 34 34 H 1.08996 * 113.73443 * 252.39584 * 6 4 3 35 35 H 1.09004 * 113.72951 * 23.57010 * 6 4 3 36 36 H 1.09007 * 113.75899 * 90.60031 * 7 6 4 37 37 H 1.09003 * 113.76081 * 221.84986 * 7 6 4 38 38 H 1.09004 * 110.97185 * 24.23752 * 11 9 8 39 39 H 1.09003 * 110.96921 * 148.00037 * 11 9 8 40 40 H 1.09002 * 110.21977 * 215.56699 * 12 11 9 41 41 H 1.09000 * 110.24957 * 93.58371 * 12 11 9 42 42 H 1.09005 * 109.47270 * 179.97438 * 14 13 12 43 43 H 1.09004 * 109.46671 * 299.94490 * 14 13 12 44 44 H 1.08994 * 109.47142 * 59.94952 * 14 13 12 45 45 H 1.09002 * 109.47425 * 60.00091 * 19 17 2 46 46 H 1.08997 * 109.47387 * 299.99843 * 19 17 2 47 47 H 0.97000 * 120.00258 * 0.27534 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4523 1.7105 -1.4425 5 1 1.5598 2.1005 -1.9318 6 6 3.6918 2.6085 -1.6064 7 6 3.9985 1.7860 -2.8709 8 7 3.1872 0.7124 -2.2506 9 6 2.3026 0.0808 -3.2389 10 1 1.4694 -0.4157 -2.7415 11 6 3.0925 -0.9260 -4.1068 12 6 3.4829 -0.0501 -5.3224 13 7 2.4680 1.0081 -5.3852 14 6 2.2211 1.8480 -6.5599 15 6 1.7938 1.1075 -4.2266 16 8 0.9063 1.9040 -4.0055 17 6 2.1389 -1.1671 -0.0005 18 8 3.3517 -1.1671 -0.0010 19 6 1.3855 -2.4722 -0.0005 20 16 2.5617 -3.8480 -0.0020 21 6 1.4417 -5.2082 -0.0026 22 1 0.3765 -5.0305 -0.0024 23 6 1.9285 -6.5080 -0.0032 24 7 3.2269 -6.7245 -0.0089 25 14 0.7411 -7.9501 -0.0045 26 1 0.4313 -8.3373 1.3953 27 1 -0.5119 -7.5589 -0.6988 28 1 1.3601 -9.1003 -0.7109 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6083 2.0285 0.5138 33 1 3.1499 1.1385 0.5137 34 1 3.4535 3.6525 -1.8093 35 1 4.4292 2.4875 -0.8128 36 1 3.5587 2.1971 -3.7796 37 1 5.0527 1.5333 -2.9855 38 1 3.9777 -1.2839 -3.5811 39 1 2.4589 -1.7587 -4.4125 40 1 3.4653 -0.6444 -6.2361 41 1 4.4715 0.3838 -5.1728 42 1 1.4171 2.5510 -6.3415 43 1 3.1277 2.3995 -6.8093 44 1 1.9351 1.2188 -7.4027 45 1 0.7585 -2.5298 -0.8903 46 1 0.7592 -2.5302 0.8897 47 1 3.8435 -5.9757 -0.0087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230819168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:09 Heat of formation + Delta-G solvation = -13.369792 kcal Electronic energy + Delta-G solvation = -29311.840384 eV Core-core repulsion = 25429.792233 eV Total energy + Delta-G solvation = -3882.048151 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.75038 -39.46412 -38.34407 -36.62933 -35.07604 -33.04483 -32.49398 -30.43668 -29.02405 -28.04601 -27.13679 -26.24588 -25.42592 -24.80963 -23.39750 -21.68654 -20.30908 -19.24543 -18.99402 -18.12814 -17.51899 -16.97225 -16.53225 -16.15300 -15.95741 -15.44435 -15.04017 -14.67883 -14.39273 -14.16722 -13.86752 -13.83010 -13.58353 -13.25732 -13.15567 -12.92523 -12.84208 -12.70636 -12.38963 -12.32744 -12.26244 -12.07532 -11.92828 -11.79586 -11.67832 -11.50299 -11.17823 -10.89652 -10.80523 -10.68714 -10.44855 -10.18111 -9.51540 -9.20824 -9.01042 -8.98061 -8.78214 -8.27717 -8.15621 -6.61145 -6.59048 -3.95521 2.25977 2.73637 2.94403 3.20872 3.35074 3.40124 3.49676 3.57731 3.78304 4.13722 4.27525 4.27948 4.43094 4.65220 4.75190 4.83424 4.90077 4.96556 5.05899 5.07814 5.18759 5.19891 5.24412 5.25373 5.30590 5.35870 5.37142 5.42917 5.49692 5.51920 5.57821 5.65104 5.73725 5.84649 5.90761 5.94061 5.94711 6.08987 6.11727 6.12743 6.27294 6.75813 6.77697 6.91025 7.66910 7.87477 7.95987 8.53666 8.71873 9.30437 10.85055 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.003482 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.218282 B = 8039.646941 C = 8962.720060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.141 3.859 4 C 0.002 3.998 5 H 0.097 0.903 6 C -0.135 4.135 7 C -0.011 4.011 8 N -0.418 5.418 9 C 0.023 3.977 10 H 0.111 0.889 11 C -0.123 4.123 12 C 0.099 3.901 13 N -0.623 5.623 14 C 0.092 3.908 15 C 0.497 3.503 16 O -0.533 6.533 17 C 0.532 3.468 18 O -0.494 6.494 19 C -0.127 4.127 20 S -0.113 6.113 21 C -0.607 4.607 22 H 0.064 0.936 23 C 0.036 3.964 24 N -0.886 5.886 25 Si 1.085 2.915 26 H -0.284 1.284 27 H -0.288 1.288 28 H -0.280 1.280 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 20.090 -9.674 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.358 5.358 3 C 0.017 3.983 4 C -0.108 4.108 5 H 0.115 0.885 6 C -0.173 4.173 7 C -0.140 4.140 8 N -0.141 5.141 9 C -0.089 4.089 10 H 0.128 0.872 11 C -0.161 4.161 12 C -0.023 4.023 13 N -0.358 5.358 14 C -0.050 4.050 15 C 0.283 3.717 16 O -0.409 6.409 17 C 0.318 3.682 18 O -0.366 6.366 19 C -0.278 4.278 20 S 0.113 5.887 21 C -0.755 4.755 22 H 0.082 0.918 23 C -0.175 4.175 24 N -0.520 5.520 25 Si 0.911 3.089 26 H -0.211 1.211 27 H -0.214 1.214 28 H -0.206 1.206 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.554 18.324 -9.329 20.570 hybrid contribution -2.217 2.189 -0.702 3.193 sum -2.771 20.513 -10.031 23.002 Atomic orbital electron populations 1.21760 0.80140 1.02954 1.01574 1.47718 1.06330 1.05656 1.76140 1.21273 0.98078 0.84878 0.94094 1.24187 0.97456 0.92350 0.96825 0.88532 1.23308 0.97578 0.98026 0.98385 1.24103 1.00724 0.92492 0.96675 1.69051 1.13260 1.19436 1.12367 1.23012 0.98015 0.95225 0.92654 0.87156 1.22704 1.02724 0.96645 0.94032 1.22279 0.91349 0.88574 1.00116 1.48340 1.37119 1.36552 1.13780 1.21559 1.01971 0.94685 0.86819 1.21807 0.80928 0.85063 0.83856 1.90674 1.30174 1.40472 1.79560 1.20097 0.88037 0.84180 0.75840 1.90696 1.13223 1.86399 1.46236 1.23348 1.03454 0.96507 1.04512 1.84762 1.10795 0.95950 1.97158 1.23743 0.94830 0.93581 1.63330 0.91799 1.25999 0.99020 0.99319 0.93118 1.70764 1.02008 1.35686 1.43565 0.83319 0.73900 0.74633 0.77026 1.21100 1.21360 1.20556 0.92802 0.91467 0.91084 0.90579 0.89290 0.91114 0.88626 0.91281 0.88923 0.87265 0.89295 0.90129 0.90837 0.90116 0.92083 0.91964 0.89653 0.89515 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.24 59.85 0.61 1.53 16 2 N -0.62 -8.98 2.83 -181.57 -0.51 -9.50 16 3 C 0.14 1.76 5.59 -4.04 -0.02 1.74 16 4 C 0.00 0.03 3.41 -66.65 -0.23 -0.20 16 5 H 0.10 1.30 5.89 -51.93 -0.31 0.99 16 6 C -0.13 -1.40 7.84 -25.79 -0.20 -1.60 16 7 C -0.01 -0.12 6.51 -2.65 -0.02 -0.14 16 8 N -0.42 -5.64 4.93 -221.79 -1.09 -6.73 16 9 C 0.02 0.32 3.24 -67.72 -0.22 0.10 16 10 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 11 C -0.12 -1.47 6.79 -24.91 -0.17 -1.64 16 12 C 0.10 0.91 6.58 -2.94 -0.02 0.89 16 13 N -0.62 -6.50 2.65 -180.06 -0.48 -6.98 16 14 C 0.09 0.73 11.14 59.85 0.67 1.39 16 15 C 0.50 6.56 4.98 -10.86 -0.05 6.51 16 16 O -0.53 -8.42 15.62 5.56 0.09 -8.34 16 17 C 0.53 9.98 7.23 -10.99 -0.08 9.90 16 18 O -0.49 -10.82 14.88 5.56 0.08 -10.74 16 19 C -0.13 -2.61 4.71 36.00 0.17 -2.44 16 20 S -0.11 -3.01 19.60 -107.50 -2.11 -5.12 16 21 C -0.61 -17.43 9.50 30.94 0.29 -17.14 16 22 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 23 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 24 N -0.89 -27.39 13.67 55.49 0.76 -26.63 16 25 Si 1.08 24.99 29.92 -169.99 -5.09 19.91 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 31 H 0.07 0.85 6.44 -51.92 -0.33 0.51 16 32 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.09 1.26 7.15 -51.93 -0.37 0.89 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.98 7.92 -51.93 -0.41 0.56 16 36 H 0.07 0.78 5.22 -51.93 -0.27 0.51 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 1.46 8.08 -51.93 -0.42 1.04 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.60 7.71 -51.93 -0.40 0.20 16 42 H 0.08 0.73 7.53 -51.93 -0.39 0.33 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 1.66 7.40 -51.91 -0.38 1.28 16 46 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 47 H 0.28 8.78 7.13 -40.82 -0.29 8.49 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -35.90 386.34 -9.32 -45.22 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.43 Total: 3.25 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 0.64 Total: -0.16 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -1.33 Total: -49.84 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.17 Total: -19.08 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.09 Total: 19.91 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.11 Total: -5.12 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.90 -9.32 -45.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230819168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.851 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds