Wall clock time and date at job start Sat Apr 11 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47900 * 111.00160 * 2 1 4 4 C 1.53993 * 107.06140 * 145.84571 * 3 2 1 5 5 C 1.54594 * 105.14022 * 358.77656 * 4 3 2 6 6 H 1.09001 * 110.72774 * 96.57569 * 5 4 3 7 7 C 1.50697 * 110.72021 * 219.68809 * 5 4 3 8 8 O 1.21279 * 120.00454 * 94.92779 * 7 5 4 9 9 N 1.34775 * 119.99581 * 274.91370 * 7 5 4 10 10 C 1.47423 * 125.65170 * 354.98077 * 9 7 5 11 11 C 1.54913 * 104.83016 * 204.08808 * 10 9 7 12 12 C 1.55157 * 101.58321 * 322.98331 * 11 10 9 13 13 H 1.08992 * 110.87202 * 277.07170 * 12 11 10 14 14 N 1.46499 * 110.71791 * 153.86503 * 12 11 10 15 15 C 1.34775 * 119.99330 * 91.75830 * 14 12 11 16 16 O 1.21276 * 120.00530 * 359.72315 * 15 14 12 17 17 C 1.50708 * 119.99437 * 179.72000 * 15 14 12 18 18 S 1.81001 * 109.46676 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99671 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99979 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99746 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00003 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99680 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47008 * 90.00187 * 23 21 19 25 25 H 1.48500 * 109.47018 * 210.00311 * 23 21 19 26 26 H 1.48496 * 109.47189 * 329.99980 * 23 21 19 27 27 C 1.47026 * 125.64658 * 174.92852 * 9 7 5 28 28 C 1.48738 * 111.04692 * 117.57751 * 2 1 3 29 29 H 1.08998 * 109.47399 * 60.12835 * 1 2 3 30 30 H 1.09004 * 109.47091 * 180.13062 * 1 2 3 31 31 H 1.09007 * 109.47013 * 300.12456 * 1 2 3 32 32 H 1.08999 * 109.91990 * 26.48585 * 3 2 1 33 33 H 1.09004 * 110.07950 * 265.29433 * 3 2 1 34 34 H 1.08992 * 110.30947 * 239.85428 * 4 3 2 35 35 H 1.09011 * 110.39139 * 117.73174 * 4 3 2 36 36 H 1.09003 * 110.36332 * 322.92344 * 10 9 7 37 37 H 1.08995 * 110.37136 * 85.13529 * 10 9 7 38 38 H 1.09009 * 110.99973 * 204.90923 * 11 10 9 39 39 H 1.08996 * 111.00874 * 81.06348 * 11 10 9 40 40 H 0.96993 * 119.99938 * 271.47725 * 14 12 11 41 41 H 1.08994 * 109.47218 * 299.99614 * 17 15 14 42 42 H 1.08997 * 109.46733 * 60.00435 * 17 15 14 43 43 H 0.97001 * 119.99807 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.88348 * 59.56191 * 27 9 7 45 45 H 1.09002 * 109.87898 * 298.39587 * 27 9 7 46 46 H 1.08989 * 110.83742 * 81.95908 * 28 2 1 47 47 H 1.08999 * 110.57876 * 318.76802 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4492 -0.0929 1.3153 6 1 4.1140 -0.6532 0.6579 7 6 3.9512 -0.1300 2.7357 8 8 3.1650 -0.2203 3.6547 9 7 5.2741 -0.0632 2.9848 10 6 6.3408 -0.0570 1.9673 11 6 7.5959 -0.5862 2.7053 12 6 7.4215 0.0480 4.1105 13 1 7.7913 1.0732 4.1225 14 7 8.0983 -0.7573 5.1301 15 6 9.3749 -0.4850 5.4658 16 8 9.9649 0.4233 4.9203 17 6 10.0691 -1.3093 6.5193 18 16 11.7593 -0.7019 6.7436 19 6 12.3203 -1.8124 7.9915 20 1 11.6577 -2.5750 8.3732 21 6 13.6138 -1.7069 8.4838 22 7 14.4212 -0.7770 8.0189 23 14 14.2083 -2.8836 9.8072 24 1 14.8141 -4.0802 9.1697 25 1 15.2235 -2.2057 10.6527 26 1 13.0598 -3.3004 10.6512 27 6 5.8923 0.0167 4.3164 28 6 2.0031 -0.6426 1.2304 29 1 -0.3634 0.5118 -0.8911 30 1 -0.3633 -1.0277 0.0023 31 1 -0.3633 0.5158 0.8889 32 1 1.2758 2.0562 0.4570 33 1 2.2116 1.7000 -1.0203 34 1 3.2137 2.0430 1.6765 35 1 4.1479 1.6460 0.2036 36 1 6.0801 -0.7178 1.1404 37 1 6.5118 0.9559 1.6030 38 1 8.5089 -0.2314 2.2270 39 1 7.5849 -1.6745 2.7637 40 1 7.6264 -1.4837 5.5665 41 1 9.5262 -1.2277 7.4608 42 1 10.0963 -2.3526 6.2046 43 1 15.3250 -0.7031 8.3633 44 1 5.6155 -0.8568 4.9067 45 1 5.5677 0.9263 4.8218 46 1 2.0094 -1.7278 1.1296 47 1 1.4245 -0.3396 2.1030 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493861633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:07 Heat of formation + Delta-G solvation = -87.114448 kcal Electronic energy + Delta-G solvation = -26701.515699 eV Core-core repulsion = 22816.269740 eV Total energy + Delta-G solvation = -3885.245959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65824 -40.71670 -39.39790 -38.27990 -35.37392 -34.57889 -33.49513 -32.08736 -30.72955 -30.21121 -29.20488 -27.65480 -26.79293 -24.80785 -22.98627 -22.29270 -22.01383 -21.72501 -20.08117 -19.85201 -18.59599 -18.12185 -17.31598 -17.13566 -16.98671 -16.87278 -16.49685 -16.36517 -15.75516 -15.48616 -15.17229 -14.84580 -14.79702 -14.61719 -14.55201 -14.40325 -14.10312 -13.72066 -13.59745 -13.44102 -13.16117 -13.02352 -12.89099 -12.70862 -12.63974 -12.57908 -12.51239 -12.50022 -12.21500 -11.97032 -11.73268 -11.68667 -11.13863 -11.01266 -10.92784 -10.27336 -10.18273 -9.79330 -9.49422 -8.65381 -8.34500 -6.11920 1.25163 1.42582 1.43971 1.46105 1.55027 1.58382 1.74688 2.26889 2.33009 2.95257 2.99924 3.28570 3.32776 3.47520 3.51617 3.59742 3.80767 3.92775 4.01192 4.10080 4.15259 4.23546 4.27462 4.31584 4.34613 4.49435 4.49983 4.52596 4.56370 4.69543 4.71415 4.74966 4.78570 4.90221 4.95163 4.97848 5.00689 5.06302 5.12787 5.18062 5.42549 5.43557 5.78192 5.96262 6.20194 6.34646 6.44966 6.99667 7.07326 7.20125 8.74560 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.042494 B = 0.001638 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.762402 B =17090.223405 C =17436.217950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.529 5.529 3 C 0.034 3.966 4 C -0.112 4.112 5 C -0.103 4.103 6 H 0.128 0.872 7 C 0.537 3.463 8 O -0.583 6.583 9 N -0.613 5.613 10 C 0.103 3.897 11 C -0.141 4.141 12 C 0.136 3.864 13 H 0.093 0.907 14 N -0.706 5.706 15 C 0.541 3.459 16 O -0.558 6.558 17 C -0.132 4.132 18 S -0.147 6.147 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.997 3.003 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.260 1.260 27 C 0.107 3.893 28 C 0.050 3.950 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.416 0.584 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.547 0.004 -17.958 32.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.253 5.253 3 C -0.093 4.093 4 C -0.150 4.150 5 C -0.125 4.125 6 H 0.146 0.854 7 C 0.327 3.673 8 O -0.463 6.463 9 N -0.346 5.346 10 C -0.019 4.019 11 C -0.180 4.180 12 C 0.030 3.970 13 H 0.111 0.889 14 N -0.360 5.360 15 C 0.327 3.673 16 O -0.436 6.436 17 C -0.283 4.283 18 S 0.080 5.920 19 C -0.696 4.696 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.818 3.182 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.184 1.184 27 C -0.016 4.016 28 C -0.078 4.078 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.253 0.747 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.775 1.271 -18.867 31.968 hybrid contribution -0.504 -1.293 2.638 2.981 sum -26.279 -0.022 -16.228 30.886 Atomic orbital electron populations 1.22570 0.86836 1.02823 1.01217 1.64798 1.09202 1.15385 1.35893 1.22950 0.95307 0.89549 1.01528 1.22346 0.99618 0.93266 0.99812 1.22202 0.98428 1.00036 0.91821 0.85372 1.20571 0.80139 0.74819 0.91808 1.90701 1.55592 1.51813 1.48150 1.48462 1.05468 1.72400 1.08288 1.22587 0.84585 1.03402 0.91333 1.23210 0.98622 1.01914 0.94257 1.21899 0.90272 0.96510 0.88275 0.88888 1.45681 1.12126 1.36416 1.41813 1.19972 0.81923 0.83281 0.82088 1.90696 1.65892 1.32253 1.54715 1.23386 1.00330 1.03466 1.01128 1.85524 1.07113 1.46968 1.52353 1.23218 1.01738 1.19561 1.25088 0.89983 1.26086 0.95700 0.97735 0.99448 1.70172 1.07616 1.33687 1.43184 0.84981 0.78209 0.77648 0.77320 1.19283 1.20341 1.18356 1.21981 0.91065 1.02887 0.85713 1.23123 0.92973 1.00251 0.91479 0.89919 0.90725 0.95740 0.93689 0.88311 0.92211 0.87573 0.87351 0.89018 0.89262 0.89454 0.74653 0.87352 0.87086 0.91991 0.90486 0.91050 0.89243 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.40 127.69 1.20 1.35 16 2 N -0.53 -6.86 5.55 -908.60 -5.04 -11.90 16 3 C 0.03 0.36 6.70 86.45 0.58 0.94 16 4 C -0.11 -1.14 6.50 31.47 0.20 -0.94 16 5 C -0.10 -1.30 2.91 -10.33 -0.03 -1.33 16 6 H 0.13 1.06 6.88 -2.39 -0.02 1.04 16 7 C 0.54 10.07 6.95 87.66 0.61 10.68 16 8 O -0.58 -16.00 16.08 -3.03 -0.05 -16.05 16 9 N -0.61 -9.58 3.33 -811.78 -2.70 -12.28 16 10 C 0.10 1.04 6.64 86.86 0.58 1.62 16 11 C -0.14 -2.09 6.77 31.99 0.22 -1.87 16 12 C 0.14 2.63 3.32 46.18 0.15 2.78 16 13 H 0.09 2.16 7.54 -2.39 -0.02 2.14 16 14 N -0.71 -15.88 5.18 -436.92 -2.26 -18.14 16 15 C 0.54 18.36 7.85 87.66 0.69 19.05 16 16 O -0.56 -23.87 15.50 -3.02 -0.05 -23.91 16 17 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 18 S -0.15 -7.92 20.57 -56.49 -1.16 -9.09 16 19 C -0.55 -30.83 9.50 67.96 0.65 -30.18 16 20 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 21 C 0.02 0.86 5.49 84.86 0.47 1.32 16 22 N -0.91 -55.20 13.22 21.65 0.29 -54.92 16 23 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 27 C 0.11 1.88 6.62 86.73 0.57 2.46 16 28 C 0.05 0.75 5.84 86.61 0.51 1.26 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.02 0.29 8.01 -2.38 -0.02 0.27 16 32 H 0.04 0.50 7.73 -2.39 -0.02 0.48 16 33 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.06 0.78 7.84 -2.39 -0.02 0.76 16 35 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.11 0.60 6.99 -2.39 -0.02 0.58 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.48 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.42 6.93 8.37 -92.71 -0.78 6.15 16 41 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 42 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 43 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 44 H 0.08 1.35 7.72 -2.39 -0.02 1.33 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.04 0.83 7.07 -2.39 -0.02 0.81 16 Total: -1.00 -79.50 394.76 -1.92 -81.42 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.19 Total: 17.12 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 6.83 Total: 2.61 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -9.72 Total: -97.24 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.10 Total: -39.97 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.09 kcal Total: -79.50 -1.92 -81.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493861633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.691 kcal (2) G-P(sol) polarization free energy of solvation -79.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds