Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99636 * 2 1 4 4 C 1.46895 * 111.00276 * 123.95294 * 2 1 3 5 5 C 1.53002 * 109.47031 * 66.04714 * 4 2 1 6 6 C 1.50703 * 109.47024 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00114 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00196 * 180.02562 * 6 5 4 9 9 C 1.48139 * 127.84011 * 179.97438 * 8 6 5 10 10 C 1.54396 * 104.61613 * 140.41215 * 9 8 6 11 11 H 1.09006 * 117.61355 * 242.76615 * 10 9 8 12 12 C 1.54141 * 104.96557 * 23.83114 * 10 9 8 13 13 H 1.09000 * 121.78605 * 222.20120 * 12 10 9 14 14 C 1.48148 * 127.83260 * 359.97438 * 8 6 5 15 15 C 1.53000 * 59.75293 * 114.13787 * 12 10 9 16 16 H 1.09005 * 117.43889 * 252.37168 * 15 12 10 17 17 N 1.46504 * 117.44405 * 107.62547 * 15 12 10 18 18 C 1.34771 * 119.99670 * 135.99533 * 17 15 12 19 19 O 1.21284 * 120.00353 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99952 * 179.97438 * 18 17 15 21 21 S 1.80990 * 109.47384 * 180.02562 * 20 18 17 22 22 C 1.76199 * 100.00278 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99888 * 359.97438 * 22 21 20 24 24 C 1.38797 * 120.00452 * 179.97438 * 22 21 20 25 25 N 1.31633 * 120.00292 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99660 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99524 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99704 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99697 * 26 24 22 30 30 H 1.08997 * 109.47063 * 296.04116 * 1 2 3 31 31 H 1.08990 * 109.47175 * 56.04922 * 1 2 3 32 32 H 1.09001 * 109.46702 * 176.04507 * 1 2 3 33 33 H 1.09004 * 109.47010 * 183.95667 * 3 2 1 34 34 H 1.09002 * 109.47514 * 303.95157 * 3 2 1 35 35 H 1.08997 * 109.47460 * 63.95491 * 3 2 1 36 36 H 1.09001 * 109.47055 * 306.04970 * 4 2 1 37 37 H 1.09005 * 109.47438 * 186.05088 * 4 2 1 38 38 H 1.09001 * 109.46992 * 60.00217 * 5 4 2 39 39 H 1.09002 * 109.47299 * 299.99929 * 5 4 2 40 40 H 1.09002 * 110.41029 * 21.62897 * 9 8 6 41 41 H 1.08999 * 110.40836 * 259.19437 * 9 8 6 42 42 H 1.08994 * 110.41194 * 338.37918 * 14 8 6 43 43 H 1.09002 * 110.40403 * 100.69040 * 14 8 6 44 44 H 0.96994 * 119.99668 * 315.99914 * 17 15 12 45 45 H 1.09001 * 109.47050 * 59.99941 * 20 18 17 46 46 H 1.08999 * 109.47014 * 300.00996 * 20 18 17 47 47 H 0.96997 * 119.99773 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.6316 -2.2426 0.9703 6 6 2.1712 -3.0283 2.1376 7 8 2.7867 -2.4629 3.0166 8 7 1.9707 -4.3594 2.2044 9 6 2.4202 -5.2941 3.2622 10 6 1.2377 -6.2693 3.4484 11 1 0.7450 -6.2861 4.4206 12 6 0.4668 -6.2196 2.1146 13 1 -0.6223 -6.1899 2.0816 14 6 1.2508 -5.2196 1.2367 15 6 1.1736 -7.5052 2.5488 16 1 2.0813 -7.7847 2.0137 17 7 0.3338 -8.6206 2.9926 18 6 0.5993 -9.8730 2.5717 19 8 1.5337 -10.0769 1.8258 20 6 -0.2642 -11.0205 3.0286 21 16 0.3432 -12.5610 2.2981 22 6 -0.8151 -13.7005 2.9797 23 1 -1.5970 -13.3480 3.6361 24 6 -0.7227 -15.0510 2.6731 25 7 -1.5883 -15.9022 3.1819 26 14 0.6301 -15.6607 1.5384 27 1 0.1495 -15.6291 0.1336 28 1 0.9944 -17.0527 1.9057 29 1 1.8218 -14.7850 1.6736 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 0.5739 -0.8524 32 1 -0.3633 -1.0253 -0.0709 33 1 3.0828 1.3433 -0.0709 34 1 1.5898 1.9164 -0.8524 35 1 1.7044 1.8724 0.9233 36 1 1.5612 -0.3872 2.0627 37 1 3.0799 -0.6610 1.1756 38 1 2.0660 -2.6213 0.0451 39 1 0.5473 -2.3475 0.9323 40 1 2.6169 -4.7540 4.1883 41 1 3.3105 -5.8337 2.9393 42 1 0.5654 -4.6232 0.6345 43 1 1.9586 -5.7459 0.5962 44 1 -0.4133 -8.4575 3.5893 45 1 -1.2932 -10.8491 2.7127 46 1 -0.2254 -11.0940 4.1155 47 1 -1.5235 -16.8460 2.9679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494393372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = -25.610844 kcal Electronic energy + Delta-G solvation = -26072.434387 eV Core-core repulsion = 22189.855424 eV Total energy + Delta-G solvation = -3882.578963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99239 -39.59453 -38.61680 -37.65199 -34.93566 -32.74877 -32.47742 -31.75401 -29.35727 -28.96937 -28.08364 -26.61283 -25.65883 -24.78125 -21.99345 -21.55727 -20.81324 -20.55997 -19.59230 -17.97552 -17.77117 -16.88733 -16.68368 -16.35280 -16.09469 -15.48993 -15.34330 -15.12648 -15.02187 -14.83964 -14.41279 -14.18313 -13.70818 -13.64991 -13.34113 -13.10318 -12.98512 -12.88722 -12.83290 -12.76322 -12.37809 -12.27310 -12.18006 -12.04199 -11.91136 -11.43230 -11.31263 -11.15625 -11.04034 -10.73156 -10.57803 -10.14154 -9.90051 -9.69591 -9.18038 -9.04908 -8.93929 -8.89728 -8.56527 -6.97487 -6.32889 -4.05533 2.20582 2.39608 2.63165 2.65011 3.12589 3.26864 3.30099 3.46311 3.47053 3.53874 4.14811 4.25113 4.26247 4.29414 4.36147 4.44751 4.57804 4.63032 4.64296 4.69680 4.76941 4.88314 4.99081 5.02532 5.03589 5.06276 5.08515 5.11180 5.19802 5.38061 5.39330 5.40806 5.41547 5.48231 5.49534 5.63317 5.66791 5.69648 5.72969 5.92707 6.35145 6.46462 6.47806 7.10426 7.40653 7.73611 7.89968 8.30825 8.37410 9.13081 10.76286 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032712 B = 0.001557 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.739543 B =17984.165111 C =18166.277645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.550 5.550 3 C 0.025 3.975 4 C 0.069 3.931 5 C -0.133 4.133 6 C 0.538 3.462 7 O -0.542 6.542 8 N -0.624 5.624 9 C 0.134 3.866 10 C -0.186 4.186 11 H 0.125 0.875 12 C -0.188 4.188 13 H 0.125 0.875 14 C 0.130 3.870 15 C 0.134 3.866 16 H 0.140 0.860 17 N -0.708 5.708 18 C 0.537 3.463 19 O -0.513 6.513 20 C -0.125 4.125 21 S -0.139 6.139 22 C -0.523 4.523 23 H 0.088 0.912 24 C 0.097 3.903 25 N -0.879 5.879 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.403 0.597 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 31.728 -3.975 32.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.274 5.274 3 C -0.123 4.123 4 C -0.059 4.059 5 C -0.174 4.174 6 C 0.328 3.672 7 O -0.419 6.419 8 N -0.359 5.359 9 C 0.011 3.989 10 C -0.206 4.206 11 H 0.143 0.857 12 C -0.210 4.210 13 H 0.143 0.857 14 C 0.007 3.993 15 C 0.026 3.974 16 H 0.157 0.843 17 N -0.359 5.359 18 C 0.324 3.676 19 O -0.386 6.386 20 C -0.275 4.275 21 S 0.087 5.913 22 C -0.671 4.671 23 H 0.106 0.894 24 C -0.112 4.112 25 N -0.516 5.516 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.238 0.762 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.373 31.382 -5.175 32.256 hybrid contribution -1.644 0.131 1.563 2.272 sum 3.729 31.512 -3.612 31.937 Atomic orbital electron populations 1.22477 0.87372 1.02451 1.00715 1.61961 1.08106 1.14201 1.43096 1.22373 1.00974 0.88352 1.00623 1.21842 1.01193 0.91407 0.91451 1.21622 1.02765 0.95406 0.97562 1.20269 0.79409 0.79978 0.87579 1.90726 1.41715 1.68604 1.40896 1.49278 1.55681 1.06295 1.24606 1.21720 0.95175 0.89428 0.92537 1.24118 1.00474 1.00012 0.96035 0.85704 1.24218 0.99903 0.99833 0.96997 0.85711 1.21853 0.95296 0.91230 0.90894 1.21560 0.96259 0.81017 0.98580 0.84253 1.45329 1.33386 1.05847 1.51357 1.20340 0.84769 0.82767 0.79726 1.90709 1.29630 1.83757 1.34530 1.23280 1.02197 0.96979 1.05064 1.84807 1.43746 0.97461 1.65252 1.22306 1.16156 0.93776 1.34854 0.89354 1.24707 0.95770 0.95563 0.95188 1.69936 1.35223 1.03380 1.43033 0.86740 0.83837 0.79724 0.81573 1.19174 1.19888 1.15921 0.95477 0.91183 0.91125 0.91140 0.91171 0.95490 0.93849 0.89822 0.87805 0.88795 0.89157 0.90265 0.89381 0.89867 0.76244 0.88282 0.88229 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.32 60.07 0.56 0.65 16 2 N -0.55 -3.65 5.02 -251.26 -1.26 -4.91 16 3 C 0.02 0.14 9.57 60.06 0.57 0.71 16 4 C 0.07 0.51 4.25 -3.83 -0.02 0.50 16 5 C -0.13 -0.87 4.60 -27.88 -0.13 -1.00 16 6 C 0.54 5.10 7.91 -10.98 -0.09 5.01 16 7 O -0.54 -7.14 16.25 5.55 0.09 -7.05 16 8 N -0.62 -5.14 3.32 -169.27 -0.56 -5.70 16 9 C 0.13 1.11 6.85 -2.41 -0.02 1.10 16 10 C -0.19 -1.42 7.05 -89.29 -0.63 -2.05 16 11 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.19 -1.36 7.05 -89.26 -0.63 -1.99 16 13 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 14 C 0.13 0.83 6.72 -2.38 -0.02 0.81 16 15 C 0.13 1.28 5.98 -67.93 -0.41 0.87 16 16 H 0.14 1.56 7.40 -51.93 -0.38 1.17 16 17 N -0.71 -7.84 5.56 -53.80 -0.30 -8.14 16 18 C 0.54 8.69 7.85 -10.99 -0.09 8.61 16 19 O -0.51 -10.23 15.43 5.55 0.09 -10.15 16 20 C -0.12 -2.25 6.16 36.01 0.22 -2.02 16 21 S -0.14 -3.39 18.55 -107.50 -1.99 -5.39 16 22 C -0.52 -14.71 10.04 30.94 0.31 -14.40 16 23 H 0.09 2.59 8.03 -52.48 -0.42 2.16 16 24 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 25 N -0.88 -26.10 13.97 55.49 0.78 -25.32 16 26 Si 0.86 21.33 27.74 -169.99 -4.71 16.61 16 27 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 29 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 30 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.07 0.32 6.47 -51.93 -0.34 -0.02 16 33 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 34 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 35 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 36 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 37 H 0.08 0.69 8.02 -51.93 -0.42 0.28 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.48 6.36 -51.93 -0.33 0.15 16 40 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.40 7.30 -51.93 -0.38 0.02 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.40 3.34 8.83 -40.82 -0.36 2.98 16 45 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 46 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 47 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -35.16 399.96 -9.98 -45.13 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.68 Total: -0.61 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.44 Total: -0.52 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -1.35 Total: -44.07 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.18 Total: -17.19 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.16 -9.98 -45.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494393372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.522 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds