Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45752 * 117.94699 * 2 1 4 4 C 1.52922 * 110.48937 * 160.90246 * 3 2 1 5 5 C 1.53344 * 108.67401 * 50.75001 * 4 3 2 6 6 C 1.53065 * 108.42579 * 292.47441 * 5 4 3 7 7 H 1.09007 * 109.40271 * 288.76820 * 6 5 4 8 8 N 1.46909 * 109.40357 * 169.02918 * 6 5 4 9 9 C 1.46902 * 110.99952 * 154.56789 * 8 6 5 10 10 C 1.50708 * 109.46687 * 179.97438 * 9 8 6 11 11 C 1.30999 * 119.99612 * 127.16071 * 10 9 8 12 12 C 1.50697 * 120.00115 * 7.56087 * 11 10 9 13 13 N 1.46496 * 109.47081 * 127.00424 * 12 11 10 14 14 C 1.34781 * 120.00087 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99698 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00004 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47033 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99713 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00202 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99734 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00046 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00010 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46893 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47214 * 119.99743 * 22 20 18 25 25 H 1.48496 * 109.46964 * 239.99999 * 22 20 18 26 26 C 1.33347 * 117.94403 * 179.97438 * 2 1 3 27 27 O 1.21284 * 118.24688 * 2.22009 * 26 2 1 28 28 H 1.08996 * 109.47037 * 89.99853 * 1 2 3 29 29 H 1.08997 * 109.47075 * 210.00190 * 1 2 3 30 30 H 1.09007 * 109.47209 * 330.00332 * 1 2 3 31 31 H 1.09006 * 109.29884 * 281.21499 * 3 2 1 32 32 H 1.08998 * 109.30269 * 40.58703 * 3 2 1 33 33 H 1.08996 * 109.60521 * 170.50784 * 4 3 2 34 34 H 1.09000 * 109.59869 * 290.99756 * 4 3 2 35 35 H 1.08998 * 109.67789 * 172.73314 * 5 4 3 36 36 H 1.09009 * 109.70225 * 52.21780 * 5 4 3 37 37 H 1.00902 * 110.99646 * 30.61028 * 8 6 5 38 38 H 1.08997 * 109.47137 * 299.99735 * 9 8 6 39 39 H 1.09002 * 109.47086 * 60.00429 * 9 8 6 40 40 H 1.07998 * 119.99884 * 307.16424 * 10 9 8 41 41 H 1.08001 * 119.99409 * 187.56492 * 11 10 9 42 42 H 1.08998 * 109.47035 * 247.00162 * 12 11 10 43 43 H 1.09001 * 109.47309 * 7.00273 * 12 11 10 44 44 H 0.97005 * 120.00211 * 0.02562 * 13 12 11 45 45 H 1.08998 * 109.47179 * 299.99897 * 16 14 13 46 46 H 1.09001 * 109.47048 * 59.99936 * 16 14 13 47 47 H 0.97002 * 120.00028 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5947 1.1260 0.4687 5 6 4.2494 -0.0014 -0.3386 6 6 3.5838 -1.3240 0.0496 7 1 3.8876 -1.5995 1.0595 8 7 4.0025 -2.3747 -0.8879 9 6 3.9147 -3.7020 -0.2644 10 6 4.3505 -4.7516 -1.2541 11 6 5.2789 -5.6157 -0.9262 12 6 5.7897 -5.6716 0.4905 13 7 5.6949 -7.0455 0.9900 14 6 6.0982 -7.3365 2.2427 15 8 6.5400 -6.4609 2.9562 16 6 6.0001 -8.7497 2.7567 17 16 6.6152 -8.8171 4.4576 18 6 6.3902 -10.5315 4.7966 19 1 5.9778 -11.1821 4.0396 20 6 6.7429 -11.0459 6.0366 21 7 7.2461 -10.2531 6.9590 22 14 6.5050 -12.8635 6.3958 23 1 5.9276 -13.5324 5.2023 24 1 7.8162 -13.4792 6.7230 25 1 5.5817 -13.0237 7.5476 26 6 2.0899 -1.1780 0.0005 27 8 1.4157 -2.1854 -0.0404 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 2.1402 1.6996 -1.0092 32 1 1.6268 1.9720 0.6693 33 1 4.1383 2.0564 0.3048 34 1 3.6095 0.8729 1.5288 35 1 5.3143 -0.0456 -0.1105 36 1 4.1097 0.1807 -1.4043 37 1 4.9334 -2.1992 -1.2354 38 1 4.5633 -3.7358 0.6109 39 1 2.8853 -3.8938 0.0385 40 1 3.8974 -4.7914 -2.2336 41 1 5.6781 -6.2880 -1.6712 42 1 6.8301 -5.3472 0.5146 43 1 5.1895 -5.0141 1.1194 44 1 5.3426 -7.7460 0.4189 45 1 4.9596 -9.0735 2.7331 46 1 6.5996 -9.4076 2.1275 47 1 7.4929 -10.6126 7.8255 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497535780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = -44.134272 kcal Electronic energy + Delta-G solvation = -26233.027386 eV Core-core repulsion = 22349.645187 eV Total energy + Delta-G solvation = -3883.382199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.92919 -39.20116 -37.42044 -36.85517 -35.58177 -33.65261 -32.41383 -32.26953 -29.71999 -28.89714 -27.51541 -26.11819 -25.43122 -24.68109 -23.58658 -22.66454 -20.37601 -19.30441 -18.77485 -17.69968 -17.29498 -16.95420 -16.55363 -16.39850 -16.19212 -15.47963 -15.34027 -14.96225 -14.78905 -14.63662 -14.41393 -13.97333 -13.91582 -13.81861 -13.51148 -13.22738 -13.03566 -12.99498 -12.73143 -12.52526 -12.46217 -12.14817 -11.78754 -11.73376 -11.56642 -11.48091 -11.05771 -11.02122 -10.99956 -10.74038 -10.07611 -9.79264 -9.65328 -9.24355 -9.10742 -9.06077 -8.91699 -8.60642 -8.21201 -6.47986 -6.20226 -3.90414 1.76579 2.36381 2.59912 3.12337 3.13277 3.22951 3.30463 3.37525 3.75392 3.87483 4.03605 4.15349 4.22047 4.26877 4.41552 4.61878 4.75104 4.80592 4.85025 4.92381 4.97656 5.01128 5.12709 5.15044 5.19664 5.20531 5.25107 5.34651 5.45901 5.49474 5.54767 5.60470 5.65463 5.74895 5.85156 5.92666 6.00533 6.17308 6.32729 6.38386 6.54633 6.67600 6.96015 7.12166 7.61737 7.75839 7.90642 8.37273 8.64279 9.25299 10.87296 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.001673 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.554566 B =16735.025461 C =17138.640160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.113 3.887 4 C -0.135 4.135 5 C -0.127 4.127 6 C 0.076 3.924 7 H 0.080 0.920 8 N -0.667 5.667 9 C 0.067 3.933 10 C -0.127 4.127 11 C -0.172 4.172 12 C 0.140 3.860 13 N -0.734 5.734 14 C 0.531 3.469 15 O -0.520 6.520 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.525 3.475 27 O -0.535 6.535 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.349 0.651 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.399 0.601 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 24.771 -20.015 33.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C -0.010 4.010 4 C -0.173 4.173 5 C -0.165 4.165 6 C -0.037 4.037 7 H 0.098 0.902 8 N -0.299 5.299 9 C -0.060 4.060 10 C -0.146 4.146 11 C -0.192 4.192 12 C 0.016 3.984 13 N -0.388 5.388 14 C 0.318 3.682 15 O -0.395 6.395 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.312 3.688 27 O -0.411 6.411 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.168 0.832 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.233 0.767 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.229 25.674 -18.946 33.216 hybrid contribution -0.092 -2.392 -0.391 2.425 sum -9.321 23.283 -19.337 31.668 Atomic orbital electron populations 1.21689 0.79455 1.03199 1.02047 1.47238 1.07428 1.05968 1.73904 1.21430 0.93201 0.84627 1.01708 1.21870 0.94723 0.99867 1.00851 1.21873 1.00304 0.92688 1.01606 1.21375 0.91940 0.93133 0.97269 0.90218 1.60053 1.31870 1.00721 1.37305 1.21457 1.03460 0.86567 0.94544 1.22775 0.95599 0.95900 1.00362 1.22933 0.98151 1.01240 0.96835 1.20430 1.01458 0.84604 0.91893 1.45967 1.67450 1.10161 1.15269 1.20327 0.76534 0.90688 0.80693 1.90691 1.43854 1.48823 1.56088 1.23531 1.05454 0.95072 1.06308 1.85381 1.82163 1.12470 1.03463 1.22919 1.49172 0.93812 1.02362 0.90849 1.24999 0.94567 0.98990 0.95088 1.70030 1.40023 1.35249 1.05026 0.86109 0.78025 0.82923 0.78396 1.19608 1.20570 1.20577 1.20031 0.90376 0.82676 0.75685 1.90677 1.66012 1.35625 1.48789 0.92683 0.90237 0.91359 0.91605 0.90542 0.89169 0.90642 0.90220 0.89985 0.83181 0.93311 0.88200 0.86200 0.86292 0.91175 0.90580 0.76702 0.89162 0.89181 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.22 59.85 0.61 1.15 16 2 N -0.61 -4.75 3.21 -182.85 -0.59 -5.34 16 3 C 0.11 0.48 6.39 -4.49 -0.03 0.45 16 4 C -0.13 -0.48 6.02 -26.59 -0.16 -0.64 16 5 C -0.13 -0.61 5.28 -26.52 -0.14 -0.75 16 6 C 0.08 0.62 2.76 -69.08 -0.19 0.43 16 7 H 0.08 0.69 7.79 -51.93 -0.40 0.29 16 8 N -0.67 -5.88 6.19 -109.44 -0.68 -6.56 16 9 C 0.07 0.70 5.45 -4.97 -0.03 0.67 16 10 C -0.13 -1.18 9.77 -36.02 -0.35 -1.54 16 11 C -0.17 -1.61 9.63 -36.03 -0.35 -1.96 16 12 C 0.14 1.73 5.76 -5.20 -0.03 1.70 16 13 N -0.73 -10.38 5.55 -61.48 -0.34 -10.73 16 14 C 0.53 10.28 7.85 -10.98 -0.09 10.19 16 15 O -0.52 -12.11 15.86 5.56 0.09 -12.02 16 16 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16 22 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.53 5.57 7.20 -11.87 -0.09 5.49 16 27 O -0.54 -7.79 14.15 5.55 0.08 -7.71 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.70 7.20 -51.93 -0.37 0.33 16 30 H 0.07 0.29 7.86 -51.93 -0.41 -0.12 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.21 7.92 -51.93 -0.41 -0.20 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.40 8.13 -51.92 -0.42 -0.02 16 37 H 0.35 2.40 8.34 -39.29 -0.33 2.07 16 38 H 0.05 0.53 5.21 -51.93 -0.27 0.26 16 39 H 0.10 1.31 6.47 -51.93 -0.34 0.97 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.02 5.29 -51.93 -0.27 0.75 16 44 H 0.40 4.50 8.46 -40.82 -0.35 4.16 16 45 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 46 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 397.13 15.07 5.98 5.98 Total: -1.00 -37.75 397.13 -9.72 -47.47 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.35 Total: 2.78 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.42 Total: -0.91 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.87 Total: -48.33 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.17 Total: -19.73 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.75 -9.72 -47.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497535780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.336 kcal (2) G-P(sol) polarization free energy of solvation -37.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds