Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46768 * 124.34896 * 2 1 4 4 C 1.54695 * 105.53305 * 196.94741 * 3 2 1 5 5 C 1.54628 * 101.66703 * 334.73847 * 4 3 2 6 6 H 1.09008 * 110.48716 * 265.90594 * 5 4 3 7 7 N 1.46904 * 110.48489 * 143.39687 * 5 4 3 8 8 C 1.46905 * 110.99880 * 156.84248 * 7 5 4 9 9 C 1.52992 * 109.47008 * 180.02562 * 8 7 5 10 10 C 1.53784 * 113.61673 * 87.49982 * 9 8 7 11 11 C 1.53778 * 87.08081 * 139.98135 * 10 9 8 12 12 N 1.46504 * 113.61207 * 220.01967 * 11 10 9 13 13 C 1.34782 * 120.00014 * 252.49389 * 12 11 10 14 14 O 1.21283 * 119.99599 * 0.02562 * 13 12 11 15 15 C 1.50691 * 120.00122 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47432 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00250 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00078 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00003 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99758 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00051 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47352 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47471 * 119.99450 * 21 19 17 24 24 H 1.48498 * 109.47091 * 239.99789 * 21 19 17 25 25 C 1.53778 * 87.08449 * 334.56700 * 11 10 9 26 26 C 1.34420 * 124.35307 * 180.02562 * 2 1 3 27 27 O 1.21285 * 124.93634 * 359.52732 * 26 2 1 28 28 H 1.08997 * 109.47523 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47102 * 300.00287 * 1 2 3 30 30 H 1.09007 * 109.47360 * 59.99964 * 1 2 3 31 31 H 1.09001 * 110.24484 * 316.03381 * 3 2 1 32 32 H 1.08994 * 110.24675 * 77.95038 * 3 2 1 33 33 H 1.08996 * 111.08195 * 216.62425 * 4 3 2 34 34 H 1.08994 * 110.94519 * 92.79347 * 4 3 2 35 35 H 1.00894 * 110.99912 * 32.88735 * 7 5 4 36 36 H 1.08996 * 109.47242 * 59.99586 * 8 7 5 37 37 H 1.09007 * 109.46566 * 299.99655 * 8 7 5 38 38 H 1.09004 * 112.90752 * 316.24613 * 9 8 7 39 39 H 1.08993 * 113.61313 * 254.52732 * 10 9 8 40 40 H 1.09000 * 113.61578 * 25.43464 * 10 9 8 41 41 H 1.09004 * 113.61886 * 89.12045 * 11 10 9 42 42 H 0.97001 * 119.99776 * 72.50291 * 12 11 10 43 43 H 1.08997 * 109.47312 * 300.00577 * 15 13 12 44 44 H 1.09009 * 109.47249 * 59.99997 * 15 13 12 45 45 H 0.97010 * 119.99499 * 180.02562 * 20 19 17 46 46 H 1.08998 * 113.61879 * 270.88747 * 25 11 10 47 47 H 1.08997 * 113.69304 * 139.98833 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7039 0.7493 -0.4345 5 6 3.6897 -0.7378 -0.0110 6 1 4.1203 -0.8554 0.9835 7 7 4.4210 -1.5571 -0.9867 8 6 4.8920 -2.8076 -0.3762 9 6 5.6476 -3.6318 -1.4204 10 6 7.1434 -3.2868 -1.5129 11 6 7.4011 -4.7948 -1.6691 12 7 8.5801 -5.2674 -0.9391 13 6 9.6965 -5.6103 -1.6118 14 8 9.7252 -5.5272 -2.8214 15 6 10.9090 -6.0970 -0.8610 16 16 12.2343 -6.4743 -2.0346 17 6 13.4897 -7.0053 -0.9182 18 1 13.2965 -7.0202 0.1442 19 6 14.7271 -7.4045 -1.4042 20 7 14.9623 -7.3868 -2.6992 21 14 16.0579 -7.9681 -0.2207 22 1 15.5455 -7.8959 1.1712 23 1 16.4401 -9.3681 -0.5358 24 1 17.2462 -7.0880 -0.3566 25 6 6.0793 -5.0189 -0.9157 26 6 2.2235 -1.1097 -0.0005 27 8 1.7946 -2.2442 0.0072 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8981 1.9385 -0.7100 32 1 2.3296 1.6436 1.0001 33 1 4.4786 1.2996 0.0995 34 1 3.8310 0.8467 -1.5126 35 1 5.1880 -1.0404 -1.3901 36 1 4.0379 -3.3779 -0.0112 37 1 5.5576 -2.5775 0.4557 38 1 5.1445 -3.6561 -2.3871 39 1 7.4035 -2.7056 -2.3975 40 1 7.5524 -2.8669 -0.5939 41 1 7.3774 -5.1370 -2.7038 42 1 8.5571 -5.3337 0.0284 43 1 11.2445 -5.3224 -0.1714 44 1 10.6527 -6.9961 -0.3005 45 1 15.8270 -7.6662 -3.0389 46 1 6.1972 -5.0725 0.1665 47 1 5.4794 -5.8357 -1.3171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505482870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = -46.415744 kcal Electronic energy + Delta-G solvation = -26100.023971 eV Core-core repulsion = 22216.542840 eV Total energy + Delta-G solvation = -3883.481131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91309 -39.96787 -38.22689 -36.81779 -35.85344 -33.32666 -32.41989 -31.88805 -29.32470 -27.86944 -27.33710 -25.89899 -25.52170 -25.16672 -22.54400 -22.10183 -20.35805 -19.85151 -19.55107 -17.77813 -17.40706 -17.09954 -16.50421 -16.22501 -16.01552 -15.60730 -15.23165 -14.84964 -14.79853 -14.68027 -14.28552 -14.15504 -13.90164 -13.54491 -13.24686 -13.16406 -12.95616 -12.81220 -12.63110 -12.61603 -12.48401 -12.31093 -12.11442 -11.75341 -11.55131 -11.23247 -11.06603 -11.01027 -10.76108 -10.63258 -10.41839 -10.30649 -9.78702 -9.32977 -9.20891 -9.06860 -8.85205 -8.79219 -8.21596 -6.48652 -6.20992 -3.91196 2.18110 2.53089 3.07223 3.10660 3.21980 3.29106 3.34264 3.61212 3.75295 3.81957 3.93714 4.21201 4.36248 4.38361 4.42731 4.52482 4.72242 4.75617 4.77559 4.81355 4.90832 4.97286 5.09336 5.14307 5.16383 5.16885 5.24822 5.26742 5.36343 5.52969 5.59091 5.61119 5.65226 5.82911 5.88701 5.90839 5.95482 6.01799 6.15631 6.26768 6.49311 6.62486 6.73799 6.92506 7.60694 7.76969 7.81090 8.36253 8.65723 9.24502 10.86505 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034073 B = 0.001482 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.558946 B =18893.018126 C =19070.286561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.628 5.628 3 C 0.106 3.894 4 C -0.136 4.136 5 C 0.054 3.946 6 H 0.083 0.917 7 N -0.668 5.668 8 C 0.070 3.930 9 C -0.104 4.104 10 C -0.152 4.152 11 C 0.128 3.872 12 N -0.728 5.728 13 C 0.532 3.468 14 O -0.518 6.518 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.139 4.139 26 C 0.528 3.472 27 O -0.519 6.519 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.350 0.650 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.084 0.916 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.974 19.316 8.728 35.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.364 5.364 3 C -0.017 4.017 4 C -0.174 4.174 5 C -0.060 4.060 6 H 0.100 0.900 7 N -0.301 5.301 8 C -0.059 4.059 9 C -0.124 4.124 10 C -0.191 4.191 11 C 0.022 3.978 12 N -0.381 5.381 13 C 0.318 3.682 14 O -0.392 6.392 15 C -0.305 4.305 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.178 4.178 26 C 0.314 3.686 27 O -0.393 6.393 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.170 0.830 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -28.665 18.506 6.298 34.696 hybrid contribution 1.491 -0.002 3.222 3.550 sum -27.174 18.504 9.520 34.227 Atomic orbital electron populations 1.21553 0.77963 1.03855 1.01404 1.48089 1.06519 1.07349 1.74422 1.22059 0.90214 0.87536 1.01935 1.22884 0.96911 0.93935 1.03682 1.22166 0.93436 0.93395 0.96969 0.89977 1.60219 1.30710 1.06336 1.32867 1.22076 0.98602 0.90256 0.94923 1.22374 0.94723 0.95267 1.00000 1.23604 0.95232 0.97672 1.02579 1.22360 0.83701 0.93782 0.97972 1.46005 1.13079 1.68945 1.10093 1.20342 0.83586 0.76127 0.88108 1.90693 1.82603 1.51933 1.14017 1.23541 0.98565 1.03746 1.04635 1.85396 1.04376 1.85157 1.08489 1.22915 0.99676 1.51026 0.94726 0.90900 1.24991 0.97856 0.95083 0.95655 1.70034 1.23504 1.44845 1.11899 0.86118 0.80652 0.78392 0.80335 1.19637 1.20558 1.20579 1.23356 0.96395 0.97323 1.00729 1.20763 0.88796 0.84309 0.74707 1.90700 1.78356 1.21067 1.49137 0.89880 0.92157 0.92029 0.90097 0.90980 0.88856 0.88743 0.83028 0.89731 0.94922 0.87949 0.90907 0.90040 0.86752 0.76858 0.89307 0.89251 0.92248 0.89731 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.14 59.84 0.67 1.15 16 2 N -0.63 -4.17 3.33 -180.15 -0.60 -4.77 16 3 C 0.11 0.35 7.35 -3.00 -0.02 0.33 16 4 C -0.14 -0.45 6.62 -24.98 -0.17 -0.62 16 5 C 0.05 0.35 3.24 -67.72 -0.22 0.13 16 6 H 0.08 0.49 7.85 -51.92 -0.41 0.09 16 7 N -0.67 -5.04 6.31 -106.73 -0.67 -5.72 16 8 C 0.07 0.58 5.33 -3.83 -0.02 0.56 16 9 C -0.10 -0.91 3.90 -89.81 -0.35 -1.26 16 10 C -0.15 -1.47 7.43 -25.92 -0.19 -1.67 16 11 C 0.13 1.51 4.24 -67.12 -0.28 1.23 16 12 N -0.73 -9.81 5.35 -53.02 -0.28 -10.09 16 13 C 0.53 10.03 7.85 -10.99 -0.09 9.94 16 14 O -0.52 -11.90 15.46 5.55 0.09 -11.81 16 15 C -0.15 -3.14 6.16 36.00 0.22 -2.91 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 21 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.14 -1.27 7.39 -25.92 -0.19 -1.46 16 26 C 0.53 5.06 7.65 -10.86 -0.08 4.98 16 27 O -0.52 -7.12 16.45 5.55 0.09 -7.03 16 28 H 0.08 0.56 7.53 -51.93 -0.39 0.17 16 29 H 0.06 0.20 8.14 -51.92 -0.42 -0.22 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.09 0.32 8.06 -51.93 -0.42 -0.09 16 35 H 0.35 2.11 8.42 -39.30 -0.33 1.78 16 36 H 0.08 0.88 7.29 -51.93 -0.38 0.50 16 37 H 0.03 0.25 7.78 -51.93 -0.40 -0.16 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 41 H 0.11 1.60 7.47 -51.93 -0.39 1.22 16 42 H 0.40 4.19 8.73 -40.82 -0.36 3.83 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 401.50 15.07 6.05 6.05 Total: -1.00 -37.70 401.50 -10.04 -47.73 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.68 Total: 1.24 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.53 Total: -2.65 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.82 Total: -46.12 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.18 Total: -18.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.70 -10.04 -47.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505482870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.317 kcal (2) G-P(sol) polarization free energy of solvation -37.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds