Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46768 * 124.34896 * 2 1 4 4 C 1.54695 * 105.53305 * 196.94741 * 3 2 1 5 5 C 1.54628 * 101.66703 * 334.73847 * 4 3 2 6 6 H 1.09008 * 110.48716 * 265.90594 * 5 4 3 7 7 N 1.46904 * 110.48489 * 143.39687 * 5 4 3 8 8 C 1.46905 * 110.99880 * 156.84248 * 7 5 4 9 9 C 1.52992 * 109.47008 * 180.02562 * 8 7 5 10 10 C 1.53784 * 113.61673 * 87.49982 * 9 8 7 11 11 C 1.53778 * 87.08081 * 139.98135 * 10 9 8 12 12 N 1.46504 * 113.61207 * 220.01967 * 11 10 9 13 13 C 1.34782 * 120.00014 * 252.49389 * 12 11 10 14 14 O 1.21283 * 119.99599 * 0.02562 * 13 12 11 15 15 C 1.50691 * 120.00122 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47432 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00250 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00078 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00003 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99758 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00051 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47352 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47471 * 119.99450 * 21 19 17 24 24 H 1.48498 * 109.47091 * 239.99789 * 21 19 17 25 25 C 1.53778 * 87.08449 * 334.56700 * 11 10 9 26 26 C 1.34420 * 124.35307 * 180.02562 * 2 1 3 27 27 O 1.21285 * 124.93634 * 359.52732 * 26 2 1 28 28 H 1.08997 * 109.47523 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47102 * 300.00287 * 1 2 3 30 30 H 1.09007 * 109.47360 * 59.99964 * 1 2 3 31 31 H 1.09001 * 110.24484 * 316.03381 * 3 2 1 32 32 H 1.08994 * 110.24675 * 77.95038 * 3 2 1 33 33 H 1.08996 * 111.08195 * 216.62425 * 4 3 2 34 34 H 1.08994 * 110.94519 * 92.79347 * 4 3 2 35 35 H 1.00894 * 110.99912 * 32.88735 * 7 5 4 36 36 H 1.08996 * 109.47242 * 59.99586 * 8 7 5 37 37 H 1.09007 * 109.46566 * 299.99655 * 8 7 5 38 38 H 1.09004 * 112.90752 * 316.24613 * 9 8 7 39 39 H 1.08993 * 113.61313 * 254.52732 * 10 9 8 40 40 H 1.09000 * 113.61578 * 25.43464 * 10 9 8 41 41 H 1.09004 * 113.61886 * 89.12045 * 11 10 9 42 42 H 0.97001 * 119.99776 * 72.50291 * 12 11 10 43 43 H 1.08997 * 109.47312 * 300.00577 * 15 13 12 44 44 H 1.09009 * 109.47249 * 59.99997 * 15 13 12 45 45 H 0.97010 * 119.99499 * 180.02562 * 20 19 17 46 46 H 1.08998 * 113.61879 * 270.88747 * 25 11 10 47 47 H 1.08997 * 113.69304 * 139.98833 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7039 0.7493 -0.4345 5 6 3.6897 -0.7378 -0.0110 6 1 4.1203 -0.8554 0.9835 7 7 4.4210 -1.5571 -0.9867 8 6 4.8920 -2.8076 -0.3762 9 6 5.6476 -3.6318 -1.4204 10 6 7.1434 -3.2868 -1.5129 11 6 7.4011 -4.7948 -1.6691 12 7 8.5801 -5.2674 -0.9391 13 6 9.6965 -5.6103 -1.6118 14 8 9.7252 -5.5272 -2.8214 15 6 10.9090 -6.0970 -0.8610 16 16 12.2343 -6.4743 -2.0346 17 6 13.4897 -7.0053 -0.9182 18 1 13.2965 -7.0202 0.1442 19 6 14.7271 -7.4045 -1.4042 20 7 14.9623 -7.3868 -2.6992 21 14 16.0579 -7.9681 -0.2207 22 1 15.5455 -7.8959 1.1712 23 1 16.4401 -9.3681 -0.5358 24 1 17.2462 -7.0880 -0.3566 25 6 6.0793 -5.0189 -0.9157 26 6 2.2235 -1.1097 -0.0005 27 8 1.7946 -2.2442 0.0072 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8981 1.9385 -0.7100 32 1 2.3296 1.6436 1.0001 33 1 4.4786 1.2996 0.0995 34 1 3.8310 0.8467 -1.5126 35 1 5.1880 -1.0404 -1.3901 36 1 4.0379 -3.3779 -0.0112 37 1 5.5576 -2.5775 0.4557 38 1 5.1445 -3.6561 -2.3871 39 1 7.4035 -2.7056 -2.3975 40 1 7.5524 -2.8669 -0.5939 41 1 7.3774 -5.1370 -2.7038 42 1 8.5571 -5.3337 0.0284 43 1 11.2445 -5.3224 -0.1714 44 1 10.6527 -6.9961 -0.3005 45 1 15.8270 -7.6662 -3.0389 46 1 6.1972 -5.0725 0.1665 47 1 5.4794 -5.8357 -1.3171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505482870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = -75.443061 kcal Electronic energy + Delta-G solvation = -26101.282690 eV Core-core repulsion = 22216.542840 eV Total energy + Delta-G solvation = -3884.739850 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48423 -41.05752 -39.44868 -37.47957 -36.49897 -34.60089 -34.49783 -32.45786 -30.76538 -28.52022 -27.87120 -27.64334 -26.67740 -25.83062 -23.26145 -22.73276 -21.64528 -20.61524 -20.29373 -19.71894 -17.87485 -17.85853 -17.65065 -17.35065 -16.87943 -16.67219 -16.48172 -16.39968 -15.85307 -15.72024 -15.40280 -14.80832 -14.70178 -14.58136 -14.45222 -14.29277 -13.74824 -13.66442 -13.39430 -13.37224 -13.32803 -13.15706 -13.04282 -12.91574 -12.83023 -12.60157 -12.59533 -12.08370 -11.97966 -11.70715 -11.41811 -11.23431 -11.15621 -10.99216 -10.85022 -10.26600 -9.99281 -9.69712 -9.41138 -8.66434 -8.34588 -6.12625 1.27928 1.41675 1.47910 1.53951 1.59072 1.61717 2.08837 2.26806 2.34168 2.99717 3.12551 3.32773 3.35108 3.53952 3.57783 3.71552 3.88525 3.94293 4.00230 4.07409 4.16421 4.31654 4.35577 4.41107 4.43101 4.51060 4.53917 4.62811 4.71566 4.77648 4.83470 4.85187 4.88151 4.91428 4.97721 5.06702 5.12585 5.17403 5.36260 5.42353 5.58291 5.65171 5.93289 6.10235 6.20275 6.45024 6.55516 7.06864 7.19013 7.28052 8.74956 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034073 B = 0.001482 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.558946 B =18893.018126 C =19070.286561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.628 5.628 3 C 0.102 3.898 4 C -0.125 4.125 5 C 0.054 3.946 6 H 0.090 0.910 7 N -0.680 5.680 8 C 0.079 3.921 9 C -0.092 4.092 10 C -0.139 4.139 11 C 0.111 3.889 12 N -0.701 5.701 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.130 4.130 16 S -0.153 6.153 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.273 1.273 25 C -0.127 4.127 26 C 0.510 3.490 27 O -0.576 6.576 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.360 0.640 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.416 0.584 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.104 0.896 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.254 21.274 11.488 37.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.362 5.362 3 C -0.021 4.021 4 C -0.163 4.163 5 C -0.059 4.059 6 H 0.108 0.892 7 N -0.314 5.314 8 C -0.050 4.050 9 C -0.112 4.112 10 C -0.178 4.178 11 C 0.006 3.994 12 N -0.354 5.354 13 C 0.319 3.681 14 O -0.446 6.446 15 C -0.281 4.281 16 S 0.074 5.926 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.165 4.165 26 C 0.297 3.703 27 O -0.454 6.454 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.181 0.819 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.253 0.747 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.994 20.533 9.102 36.676 hybrid contribution 1.392 -0.525 2.373 2.801 sum -27.602 20.008 11.475 35.971 Atomic orbital electron populations 1.21667 0.77491 1.02877 1.03242 1.48333 1.07261 1.07886 1.72730 1.22349 0.89607 0.86405 1.03690 1.22925 0.97756 0.91575 1.04043 1.22215 0.91294 0.95142 0.97245 0.89214 1.60105 1.31237 1.06520 1.33570 1.21904 0.97741 0.90374 0.94937 1.22215 0.94078 0.95074 0.99789 1.23533 0.95621 0.95614 1.03002 1.22561 0.83985 0.95736 0.97091 1.45770 1.11794 1.66866 1.10982 1.20118 0.84403 0.76150 0.87380 1.90684 1.83486 1.54448 1.16028 1.23385 0.96515 1.05324 1.02890 1.85589 1.08119 1.85780 1.13105 1.23245 1.00081 1.51066 0.95013 0.89905 1.26130 1.00570 0.94865 0.97559 1.70196 1.24365 1.45965 1.14284 0.84897 0.76966 0.77852 0.78169 1.18017 1.19979 1.19872 1.23333 0.94112 0.97604 1.01498 1.21441 0.90530 0.84144 0.74166 1.90658 1.79524 1.23279 1.51989 0.92292 0.90068 0.90373 0.88250 0.89032 0.86189 0.88749 0.81911 0.91994 0.93448 0.88971 0.91585 0.88495 0.89415 0.74651 0.87133 0.87319 0.91997 0.87760 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 11.14 127.77 1.42 2.26 16 2 N -0.63 -7.54 3.33 -842.46 -2.81 -10.35 16 3 C 0.10 0.36 7.35 86.91 0.64 1.00 16 4 C -0.13 -0.45 6.62 31.73 0.21 -0.24 16 5 C 0.05 0.62 3.24 44.91 0.15 0.77 16 6 H 0.09 0.89 7.85 -2.38 -0.02 0.87 16 7 N -0.68 -9.37 6.31 -491.60 -3.10 -12.47 16 8 C 0.08 1.21 5.33 86.30 0.46 1.67 16 9 C -0.09 -1.50 3.90 -10.27 -0.04 -1.54 16 10 C -0.14 -2.47 7.43 31.12 0.23 -2.24 16 11 C 0.11 2.54 4.24 45.51 0.19 2.73 16 12 N -0.70 -17.72 5.35 -440.03 -2.36 -20.08 16 13 C 0.53 19.88 7.85 87.65 0.69 20.57 16 14 O -0.57 -26.81 15.46 -3.04 -0.05 -26.85 16 15 C -0.13 -5.17 6.16 71.23 0.44 -4.73 16 16 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 17 C -0.55 -31.34 9.50 67.95 0.65 -30.70 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.77 5.49 84.86 0.47 1.23 16 20 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 21 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 C -0.13 -2.12 7.39 31.12 0.23 -1.89 16 26 C 0.51 9.66 7.65 87.90 0.67 10.33 16 27 O -0.58 -16.58 16.45 -3.04 -0.05 -16.63 16 28 H 0.06 0.85 7.53 -2.39 -0.02 0.83 16 29 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.08 0.46 8.14 -2.38 -0.02 0.45 16 31 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.09 0.38 8.06 -2.39 -0.02 0.36 16 35 H 0.36 3.61 8.42 -89.70 -0.76 2.86 16 36 H 0.06 1.27 7.29 -2.39 -0.02 1.25 16 37 H 0.05 0.58 7.78 -2.38 -0.02 0.56 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.47 7.89 -2.39 -0.02 1.45 16 41 H 0.09 2.54 7.47 -2.38 -0.02 2.52 16 42 H 0.42 7.49 8.73 -92.71 -0.81 6.69 16 43 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 44 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 45 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 46 H 0.10 1.37 8.08 -2.39 -0.02 1.36 16 47 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -86.76 401.50 -1.39 -88.15 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.58 Total: 19.01 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 6.40 Total: -0.77 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -7.98 Total: -98.88 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -0.10 Total: -43.48 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -86.76 -1.39 -88.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505482870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.709 kcal (2) G-P(sol) polarization free energy of solvation -86.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds