Wall clock time and date at job start Sat Apr 11 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47440 * 110.99929 * 2 1 4 4 C 1.54320 * 107.23072 * 123.25873 * 3 2 1 5 5 C 1.55134 * 103.02270 * 22.28110 * 4 3 2 6 6 C 1.47850 * 110.99545 * 120.84244 * 2 1 3 7 7 H 1.08992 * 110.37392 * 332.57511 * 6 2 1 8 8 C 1.50699 * 110.37086 * 94.80704 * 6 2 1 9 9 O 1.21283 * 120.00055 * 18.54522 * 8 6 2 10 10 N 1.34776 * 119.99896 * 198.53796 * 8 6 2 11 11 C 1.46496 * 120.00084 * 179.97438 * 10 8 6 12 12 H 1.09008 * 110.91253 * 37.45558 * 11 10 8 13 13 C 1.55154 * 111.00463 * 161.35426 * 11 10 8 14 14 C 1.54325 * 102.94303 * 153.57766 * 13 11 10 15 15 N 1.47290 * 107.30599 * 337.81911 * 14 13 11 16 16 C 1.34774 * 125.79121 * 178.92556 * 15 14 13 17 17 O 1.21284 * 119.99787 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00339 * 359.97438 * 16 15 14 19 19 S 1.81001 * 109.47158 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99837 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00340 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00216 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99790 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46949 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46981 * 119.99787 * 24 22 20 27 27 H 1.48497 * 109.47134 * 239.99653 * 24 22 20 28 28 C 1.47425 * 108.55742 * 358.92448 * 15 14 13 29 29 H 1.08998 * 109.47038 * 299.15629 * 1 2 3 30 30 H 1.09006 * 109.46940 * 59.15467 * 1 2 3 31 31 H 1.09001 * 109.47625 * 179.15598 * 1 2 3 32 32 H 1.09001 * 109.88731 * 242.66003 * 3 2 1 33 33 H 1.08997 * 109.89335 * 3.85499 * 3 2 1 34 34 H 1.09003 * 110.70921 * 140.67123 * 4 3 2 35 35 H 1.09003 * 110.70414 * 263.71911 * 4 3 2 36 36 H 1.08995 * 110.99294 * 206.25853 * 5 4 3 37 37 H 1.09001 * 110.99202 * 82.43740 * 5 4 3 38 38 H 0.97000 * 119.99844 * 0.02562 * 10 8 6 39 39 H 1.09002 * 110.72290 * 271.94453 * 13 11 10 40 40 H 1.08997 * 110.72022 * 35.21224 * 13 11 10 41 41 H 1.09004 * 109.88239 * 97.22707 * 14 13 11 42 42 H 1.08995 * 109.88239 * 218.23629 * 14 13 11 43 43 H 1.09001 * 109.47139 * 300.00399 * 18 16 15 44 44 H 1.09007 * 109.46778 * 60.00102 * 18 16 15 45 45 H 0.97001 * 119.99663 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.36696 * 265.26054 * 28 15 14 47 47 H 1.08995 * 110.36608 * 143.04891 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5136 1.2325 5 6 3.3047 0.0444 1.5439 6 6 1.9987 -0.7077 1.1851 7 1 1.2880 -0.6518 2.0095 8 6 2.2972 -2.1457 0.8475 9 8 2.4208 -2.4836 -0.3108 10 7 2.4270 -3.0563 1.8326 11 6 2.7166 -4.4543 1.5044 12 1 3.4029 -4.5216 0.6602 13 6 3.2765 -5.2107 2.7379 14 6 2.8776 -6.6746 2.4561 15 7 1.7455 -6.6467 1.5143 16 6 1.1186 -7.7247 1.0032 17 8 0.1932 -7.5795 0.2328 18 6 1.5674 -9.1107 1.3890 19 16 0.5375 -10.3356 0.5433 20 6 1.2601 -11.8201 1.1588 21 1 2.0899 -11.7713 1.8484 22 6 0.7637 -13.0523 0.7565 23 7 -0.2473 -13.1118 -0.0844 24 14 1.5302 -14.6261 1.4084 25 1 2.6429 -14.2889 2.3324 26 1 0.5027 -15.4119 2.1378 27 1 2.0539 -15.4285 0.2739 28 6 1.4118 -5.2405 1.2233 29 1 -0.3633 0.5007 0.8974 30 1 -0.3633 0.5269 -0.8824 31 1 -0.3634 -1.0275 -0.0151 32 1 2.5697 1.5539 -0.9105 33 1 1.1756 2.0892 0.0689 34 1 3.8001 2.1034 0.9906 35 1 2.3752 1.9575 2.0685 36 1 3.5494 -0.0796 2.5987 37 1 4.1302 -0.2834 0.9120 38 1 2.3279 -2.7860 2.7589 39 1 4.3605 -5.1101 2.7928 40 1 2.8081 -4.8530 3.6549 41 1 3.7170 -7.2084 2.0104 42 1 2.5788 -7.1626 3.3838 43 1 2.6088 -9.2494 1.0986 44 1 1.4710 -9.2367 2.4674 45 1 -0.5940 -13.9729 -0.3658 46 1 0.6127 -4.8965 1.8800 47 1 1.1187 -5.1283 0.1795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524134434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:52 Heat of formation + Delta-G solvation = -55.596277 kcal Electronic energy + Delta-G solvation = -26992.653834 eV Core-core repulsion = 23108.774606 eV Total energy + Delta-G solvation = -3883.879229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.69393 -39.71213 -38.39510 -37.08782 -34.38552 -32.57770 -32.41699 -31.27807 -29.91240 -29.62858 -27.68891 -26.11487 -25.47831 -23.83714 -22.76930 -21.65960 -21.17965 -20.32880 -19.33271 -17.91683 -17.62114 -16.97435 -16.54822 -16.41878 -15.61481 -15.31635 -15.26974 -14.79491 -14.64303 -14.49345 -14.18306 -13.88033 -13.82246 -13.67304 -13.56309 -13.15573 -13.01516 -12.65435 -12.57232 -12.51391 -12.05723 -11.94555 -11.90356 -11.77723 -11.69266 -11.66124 -11.27537 -11.12276 -11.05968 -11.00228 -10.75472 -10.01749 -9.80142 -9.51824 -9.30976 -9.06251 -8.74417 -8.50868 -8.21133 -6.48778 -6.20422 -3.91005 2.34163 2.55509 2.99710 3.08490 3.22364 3.27257 3.32070 3.57936 3.66860 3.99953 4.11561 4.15042 4.21412 4.38205 4.39716 4.58455 4.63399 4.66172 4.89405 4.93526 4.96830 5.02919 5.08205 5.11209 5.14697 5.19717 5.26108 5.30708 5.39601 5.45906 5.48931 5.56897 5.61073 5.67084 5.68361 5.76317 5.85441 5.94256 6.10816 6.15023 6.37598 6.43184 6.55553 7.20269 7.60789 7.65726 8.01995 8.36578 8.56887 9.24780 10.87081 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032279 B = 0.001838 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.216327 B =15228.246805 C =15855.021355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.512 5.512 3 C 0.043 3.957 4 C -0.141 4.141 5 C -0.116 4.116 6 C 0.054 3.946 7 H 0.077 0.923 8 C 0.520 3.480 9 O -0.505 6.505 10 N -0.724 5.724 11 C 0.135 3.865 12 H 0.105 0.895 13 C -0.136 4.136 14 C 0.104 3.896 15 N -0.626 5.626 16 C 0.549 3.451 17 O -0.512 6.512 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.099 3.901 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.065 0.935 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.997 30.748 10.087 33.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.237 5.237 3 C -0.085 4.085 4 C -0.179 4.179 5 C -0.154 4.154 6 C -0.058 4.058 7 H 0.095 0.905 8 C 0.304 3.696 9 O -0.377 6.377 10 N -0.378 5.378 11 C 0.029 3.971 12 H 0.123 0.877 13 C -0.174 4.174 14 C -0.020 4.020 15 N -0.365 5.365 16 C 0.337 3.663 17 O -0.386 6.386 18 C -0.296 4.296 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.026 4.026 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.679 30.271 7.452 32.107 hybrid contribution 1.131 -0.691 2.575 2.896 sum 8.810 29.581 10.027 32.453 Atomic orbital electron populations 1.22587 0.86726 1.02700 1.00748 1.63062 1.08300 1.13776 1.38530 1.22876 0.98097 0.88647 0.98831 1.22795 1.00364 0.96562 0.98219 1.22657 0.96126 0.94492 1.02154 1.22521 0.98067 0.92239 0.92966 0.90545 1.20423 0.76812 0.86760 0.85601 1.90753 1.47188 1.80416 1.19354 1.45878 1.74264 1.07935 1.09725 1.22060 0.96621 0.79830 0.98591 0.87711 1.22912 1.02238 0.94493 0.97743 1.21997 0.89708 0.96455 0.93804 1.48460 1.35050 1.05431 1.47515 1.20046 0.81714 0.84853 0.79645 1.90722 1.28038 1.85799 1.34039 1.23503 1.05597 0.95336 1.05208 1.85442 1.42896 0.95451 1.59640 1.22900 1.21014 0.91741 1.32606 0.90864 1.25001 0.94925 0.98880 0.94834 1.70035 1.23494 1.25845 1.30865 0.86109 0.78974 0.81677 0.78679 1.19622 1.20583 1.20556 1.22466 0.96437 0.80970 1.02692 0.95380 0.90753 0.91111 0.89980 0.92257 0.90103 0.91112 0.89914 0.89828 0.76590 0.89175 0.89937 0.90806 0.90781 0.89218 0.89277 0.92234 0.91693 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.12 60.07 0.55 0.71 16 2 N -0.51 -4.54 4.69 -232.97 -1.09 -5.64 16 3 C 0.04 0.27 6.90 -2.84 -0.02 0.25 16 4 C -0.14 -0.62 6.94 -24.91 -0.17 -0.79 16 5 C -0.12 -0.60 6.48 -24.59 -0.16 -0.76 16 6 C 0.05 0.40 2.84 -67.33 -0.19 0.20 16 7 H 0.08 0.42 7.77 -51.93 -0.40 0.01 16 8 C 0.52 5.26 7.11 -10.99 -0.08 5.18 16 9 O -0.51 -7.69 16.34 5.55 0.09 -7.59 16 10 N -0.72 -5.41 5.23 -51.73 -0.27 -5.68 16 11 C 0.13 1.28 3.32 -65.79 -0.22 1.06 16 12 H 0.10 1.20 7.73 -51.92 -0.40 0.79 16 13 C -0.14 -0.91 6.58 -24.90 -0.16 -1.08 16 14 C 0.10 1.05 6.51 -2.92 -0.02 1.03 16 15 N -0.63 -9.32 3.34 -170.31 -0.57 -9.89 16 16 C 0.55 11.02 7.87 -10.99 -0.09 10.93 16 17 O -0.51 -12.48 16.12 5.55 0.09 -12.39 16 18 C -0.15 -3.05 5.36 36.01 0.19 -2.85 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 21 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 24 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 28 C 0.10 1.31 6.59 -2.53 -0.02 1.29 16 29 H 0.03 0.17 8.09 -51.93 -0.42 -0.25 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.30 7.58 -51.93 -0.39 -0.09 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 38 H 0.40 1.65 8.51 -40.82 -0.35 1.30 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.41 8.00 -51.93 -0.42 -0.01 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -38.55 398.58 -10.27 -48.82 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.83 Total: -2.66 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.19 Total: 2.11 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -1.20 Total: -46.90 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.18 Total: -19.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.55 -10.27 -48.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524134434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.776 kcal (2) G-P(sol) polarization free energy of solvation -38.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds