Wall clock time and date at job start Sat Apr 11 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47440 * 110.99929 * 2 1 4 4 C 1.54320 * 107.23072 * 123.25873 * 3 2 1 5 5 C 1.55134 * 103.02270 * 22.28110 * 4 3 2 6 6 C 1.47850 * 110.99545 * 120.84244 * 2 1 3 7 7 H 1.08992 * 110.37392 * 332.57511 * 6 2 1 8 8 C 1.50699 * 110.37086 * 94.80704 * 6 2 1 9 9 O 1.21283 * 120.00055 * 18.54522 * 8 6 2 10 10 N 1.34776 * 119.99896 * 198.53796 * 8 6 2 11 11 C 1.46496 * 120.00084 * 179.97438 * 10 8 6 12 12 H 1.09008 * 110.91253 * 37.45558 * 11 10 8 13 13 C 1.55154 * 111.00463 * 161.35426 * 11 10 8 14 14 C 1.54325 * 102.94303 * 153.57766 * 13 11 10 15 15 N 1.47290 * 107.30599 * 337.81911 * 14 13 11 16 16 C 1.34774 * 125.79121 * 178.92556 * 15 14 13 17 17 O 1.21284 * 119.99787 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00339 * 359.97438 * 16 15 14 19 19 S 1.81001 * 109.47158 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99837 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00340 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00216 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99790 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46949 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46981 * 119.99787 * 24 22 20 27 27 H 1.48497 * 109.47134 * 239.99653 * 24 22 20 28 28 C 1.47425 * 108.55742 * 358.92448 * 15 14 13 29 29 H 1.08998 * 109.47038 * 299.15629 * 1 2 3 30 30 H 1.09006 * 109.46940 * 59.15467 * 1 2 3 31 31 H 1.09001 * 109.47625 * 179.15598 * 1 2 3 32 32 H 1.09001 * 109.88731 * 242.66003 * 3 2 1 33 33 H 1.08997 * 109.89335 * 3.85499 * 3 2 1 34 34 H 1.09003 * 110.70921 * 140.67123 * 4 3 2 35 35 H 1.09003 * 110.70414 * 263.71911 * 4 3 2 36 36 H 1.08995 * 110.99294 * 206.25853 * 5 4 3 37 37 H 1.09001 * 110.99202 * 82.43740 * 5 4 3 38 38 H 0.97000 * 119.99844 * 0.02562 * 10 8 6 39 39 H 1.09002 * 110.72290 * 271.94453 * 13 11 10 40 40 H 1.08997 * 110.72022 * 35.21224 * 13 11 10 41 41 H 1.09004 * 109.88239 * 97.22707 * 14 13 11 42 42 H 1.08995 * 109.88239 * 218.23629 * 14 13 11 43 43 H 1.09001 * 109.47139 * 300.00399 * 18 16 15 44 44 H 1.09007 * 109.46778 * 60.00102 * 18 16 15 45 45 H 0.97001 * 119.99663 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.36696 * 265.26054 * 28 15 14 47 47 H 1.08995 * 110.36608 * 143.04891 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5136 1.2325 5 6 3.3047 0.0444 1.5439 6 6 1.9987 -0.7077 1.1851 7 1 1.2880 -0.6518 2.0095 8 6 2.2972 -2.1457 0.8475 9 8 2.4208 -2.4836 -0.3108 10 7 2.4270 -3.0563 1.8326 11 6 2.7166 -4.4543 1.5044 12 1 3.4029 -4.5216 0.6602 13 6 3.2765 -5.2107 2.7379 14 6 2.8776 -6.6746 2.4561 15 7 1.7455 -6.6467 1.5143 16 6 1.1186 -7.7247 1.0032 17 8 0.1932 -7.5795 0.2328 18 6 1.5674 -9.1107 1.3890 19 16 0.5375 -10.3356 0.5433 20 6 1.2601 -11.8201 1.1588 21 1 2.0899 -11.7713 1.8484 22 6 0.7637 -13.0523 0.7565 23 7 -0.2473 -13.1118 -0.0844 24 14 1.5302 -14.6261 1.4084 25 1 2.6429 -14.2889 2.3324 26 1 0.5027 -15.4119 2.1378 27 1 2.0539 -15.4285 0.2739 28 6 1.4118 -5.2405 1.2233 29 1 -0.3633 0.5007 0.8974 30 1 -0.3633 0.5269 -0.8824 31 1 -0.3634 -1.0275 -0.0151 32 1 2.5697 1.5539 -0.9105 33 1 1.1756 2.0892 0.0689 34 1 3.8001 2.1034 0.9906 35 1 2.3752 1.9575 2.0685 36 1 3.5494 -0.0796 2.5987 37 1 4.1302 -0.2834 0.9120 38 1 2.3279 -2.7860 2.7589 39 1 4.3605 -5.1101 2.7928 40 1 2.8081 -4.8530 3.6549 41 1 3.7170 -7.2084 2.0104 42 1 2.5788 -7.1626 3.3838 43 1 2.6088 -9.2494 1.0986 44 1 1.4710 -9.2367 2.4674 45 1 -0.5940 -13.9729 -0.3658 46 1 0.6127 -4.8965 1.8800 47 1 1.1187 -5.1283 0.1795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524134434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:52 Heat of formation + Delta-G solvation = -85.857613 kcal Electronic energy + Delta-G solvation = -26993.966064 eV Core-core repulsion = 23108.774606 eV Total energy + Delta-G solvation = -3885.191459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52416 -40.81448 -39.26592 -38.23149 -35.37050 -34.59535 -33.08791 -32.37144 -30.90029 -30.55912 -28.78477 -27.65845 -26.65678 -24.86936 -23.48413 -22.13913 -21.94246 -21.07123 -20.70037 -19.63591 -18.47731 -18.17707 -17.71401 -17.11786 -16.89447 -16.62317 -16.46559 -16.17780 -15.69466 -15.64044 -15.43670 -14.92166 -14.58362 -14.46602 -14.35525 -14.29512 -14.16428 -13.86683 -13.59418 -13.44497 -13.16561 -13.12532 -12.91728 -12.81912 -12.61409 -12.57405 -12.47421 -12.30937 -12.07856 -11.86674 -11.73031 -11.65508 -11.16664 -11.08131 -10.82830 -10.29163 -10.24526 -9.75091 -9.29387 -8.70284 -8.35459 -6.14906 1.19512 1.41788 1.41870 1.49999 1.55683 1.60935 1.84856 2.21211 2.26362 2.98834 3.06691 3.19013 3.39472 3.50915 3.57499 3.67580 3.86688 3.96988 3.99327 4.03964 4.17045 4.20153 4.22633 4.31061 4.39508 4.42150 4.43223 4.55779 4.59740 4.73321 4.76273 4.79670 4.90539 4.93909 4.95357 4.96876 5.07931 5.10085 5.21143 5.30391 5.41175 5.46823 5.86886 6.03656 6.19272 6.31398 6.59613 7.04846 7.05627 7.31018 8.74263 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032279 B = 0.001838 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.216327 B =15228.246805 C =15855.021355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.039 3.961 4 C -0.133 4.133 5 C -0.111 4.111 6 C 0.056 3.944 7 H 0.103 0.897 8 C 0.516 3.484 9 O -0.567 6.567 10 N -0.704 5.704 11 C 0.144 3.856 12 H 0.083 0.917 13 C -0.113 4.113 14 C 0.089 3.911 15 N -0.617 5.617 16 C 0.544 3.456 17 O -0.571 6.571 18 C -0.116 4.116 19 S -0.158 6.158 20 C -0.543 4.543 21 H 0.086 0.914 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 1.002 2.998 25 H -0.254 1.254 26 H -0.273 1.273 27 H -0.275 1.275 28 C 0.096 3.904 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.422 0.578 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.271 0.729 46 H 0.076 0.924 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.539 32.070 14.222 36.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.088 4.088 4 C -0.171 4.171 5 C -0.149 4.149 6 C -0.056 4.056 7 H 0.121 0.879 8 C 0.302 3.698 9 O -0.443 6.443 10 N -0.358 5.358 11 C 0.037 3.963 12 H 0.101 0.899 13 C -0.151 4.151 14 C -0.033 4.033 15 N -0.352 5.352 16 C 0.332 3.668 17 O -0.450 6.450 18 C -0.267 4.267 19 S 0.070 5.930 20 C -0.691 4.691 21 H 0.104 0.896 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.824 3.176 25 H -0.177 1.177 26 H -0.199 1.199 27 H -0.200 1.200 28 C -0.028 4.028 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.260 0.740 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.269 31.655 11.678 35.269 hybrid contribution 0.353 -0.960 1.274 1.634 sum 10.623 30.695 12.952 34.968 Atomic orbital electron populations 1.22521 0.86589 1.01498 1.01814 1.62941 1.08804 1.15475 1.40151 1.22904 0.98786 0.87608 0.99456 1.22786 1.00407 0.96194 0.97695 1.22692 0.94179 0.94460 1.03585 1.22604 0.99806 0.90096 0.93097 0.87903 1.21132 0.75396 0.88285 0.84990 1.90733 1.50057 1.81559 1.21992 1.45679 1.72945 1.06620 1.10549 1.21813 0.93932 0.80732 0.99813 0.89909 1.22930 1.04183 0.90993 0.96999 1.22486 0.88030 0.99498 0.93301 1.48382 1.35174 1.04775 1.46869 1.19918 0.81566 0.85772 0.79537 1.90697 1.30833 1.86602 1.36861 1.23280 1.04548 0.93515 1.05363 1.85693 1.46289 0.98909 1.62156 1.23228 1.21272 0.91839 1.32770 0.89617 1.26189 0.95269 1.03053 0.94838 1.70208 1.25277 1.26985 1.32462 0.84856 0.78367 0.76170 0.78232 1.17728 1.19881 1.20026 1.22581 0.99128 0.80732 1.00391 0.93172 0.90862 0.93346 0.91402 0.91076 0.89188 0.89196 0.86747 0.91792 0.73963 0.86154 0.86736 0.90012 0.88848 0.87335 0.86902 0.91996 0.90572 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.12 127.69 1.17 1.53 16 2 N -0.55 -9.56 4.69 -890.99 -4.18 -13.74 16 3 C 0.04 0.46 6.90 86.65 0.60 1.05 16 4 C -0.13 -0.80 6.94 31.77 0.22 -0.58 16 5 C -0.11 -0.86 6.48 31.98 0.21 -0.65 16 6 C 0.06 0.72 2.84 44.64 0.13 0.85 16 7 H 0.10 0.78 7.77 -2.39 -0.02 0.76 16 8 C 0.52 10.19 7.11 87.66 0.62 10.82 16 9 O -0.57 -18.21 16.34 -3.04 -0.05 -18.26 16 10 N -0.70 -8.98 5.23 -435.97 -2.28 -11.26 16 11 C 0.14 2.51 3.32 46.38 0.15 2.66 16 12 H 0.08 1.88 7.73 -2.38 -0.02 1.86 16 13 C -0.11 -1.01 6.58 31.78 0.21 -0.80 16 14 C 0.09 1.50 6.51 86.68 0.56 2.06 16 15 N -0.62 -17.97 3.34 -811.11 -2.71 -20.68 16 16 C 0.54 22.30 7.87 87.66 0.69 22.99 16 17 O -0.57 -29.53 16.12 -3.04 -0.05 -29.58 16 18 C -0.12 -4.82 5.36 71.24 0.38 -4.44 16 19 S -0.16 -9.06 20.57 -56.49 -1.16 -10.23 16 20 C -0.54 -31.41 9.50 67.95 0.65 -30.76 16 21 H 0.09 4.56 7.80 -2.91 -0.02 4.54 16 22 C 0.01 0.63 5.49 84.86 0.47 1.10 16 23 N -0.91 -57.01 13.22 21.65 0.29 -56.73 16 24 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 25 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 C 0.10 2.57 6.59 86.85 0.57 3.14 16 29 H 0.05 0.52 8.09 -2.39 -0.02 0.50 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.62 7.58 -2.39 -0.02 0.60 16 34 H 0.09 0.40 8.14 -2.39 -0.02 0.39 16 35 H 0.09 0.24 8.14 -2.39 -0.02 0.23 16 36 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.06 0.77 8.05 -2.39 -0.02 0.75 16 38 H 0.42 1.72 8.51 -92.71 -0.79 0.93 16 39 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.11 0.40 8.00 -2.39 -0.02 0.38 16 41 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 44 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 45 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 46 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.04 1.40 8.03 -2.39 -0.02 1.38 16 Total: -1.00 -92.43 398.58 -1.32 -93.75 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.17 Total: 11.88 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.62 Total: 8.96 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -8.88 Total: -102.41 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -0.10 Total: -47.84 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.16 Total: -10.23 kcal Total: -92.43 -1.32 -93.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524134434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.888 kcal (2) G-P(sol) polarization free energy of solvation -92.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds