Wall clock time and date at job start Sat Apr 11 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48565 * 111.00040 * 2 1 4 4 C 1.54380 * 104.59741 * 200.96191 * 3 2 1 5 5 C 1.54267 * 105.05931 * 23.85252 * 4 3 2 6 6 H 1.08993 * 110.31892 * 241.00398 * 5 4 3 7 7 C 1.52999 * 110.32275 * 118.89594 * 5 4 3 8 8 C 1.50692 * 109.47192 * 174.99920 * 7 5 4 9 9 O 1.21291 * 119.99901 * 0.02562 * 8 7 5 10 10 N 1.34777 * 120.00261 * 180.02562 * 8 7 5 11 11 C 1.47585 * 134.49353 * 180.02562 * 10 8 7 12 12 C 1.53947 * 86.11441 * 155.36057 * 11 10 8 13 13 N 1.46510 * 113.74068 * 269.15382 * 12 11 10 14 14 C 1.34775 * 119.99672 * 203.07479 * 13 12 11 15 15 O 1.21276 * 120.00127 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99650 * 179.97438 * 14 13 12 17 17 S 1.81007 * 109.47134 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00186 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99674 * 359.97438 * 18 17 16 20 20 C 1.38792 * 120.00205 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00067 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47338 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47084 * 120.00058 * 22 20 18 25 25 H 1.48508 * 109.46871 * 239.99548 * 22 20 18 26 26 C 1.47580 * 134.49108 * 0.02562 * 10 8 7 27 27 C 1.48559 * 110.99779 * 244.58611 * 2 1 3 28 28 H 1.08996 * 109.47031 * 60.12728 * 1 2 3 29 29 H 1.09002 * 109.46750 * 180.12596 * 1 2 3 30 30 H 1.08997 * 109.46812 * 300.12428 * 1 2 3 31 31 H 1.08996 * 110.40707 * 82.18169 * 3 2 1 32 32 H 1.09002 * 110.51004 * 319.79625 * 3 2 1 33 33 H 1.08996 * 110.31894 * 264.95883 * 4 3 2 34 34 H 1.08995 * 110.40809 * 142.79041 * 4 3 2 35 35 H 1.09001 * 109.46770 * 54.99468 * 7 5 4 36 36 H 1.08999 * 109.47079 * 295.00060 * 7 5 4 37 37 H 1.08996 * 113.76681 * 41.05704 * 11 10 8 38 38 H 1.08997 * 113.86988 * 269.67617 * 11 10 8 39 39 H 1.09002 * 113.73955 * 137.95260 * 12 11 10 40 40 H 0.96993 * 119.99587 * 23.07212 * 13 12 11 41 41 H 1.09003 * 109.47152 * 300.00016 * 16 14 13 42 42 H 1.08991 * 109.47229 * 60.00268 * 16 14 13 43 43 H 0.97002 * 120.00088 * 180.02562 * 21 20 18 44 44 H 1.08996 * 113.77201 * 90.33634 * 26 10 8 45 45 H 1.09002 * 113.76575 * 318.93589 * 26 10 8 46 46 H 1.08998 * 110.41948 * 40.25800 * 27 2 1 47 47 H 1.09006 * 110.40910 * 277.81301 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0015 1.3870 0.0000 4 6 3.4433 1.2502 -0.5345 5 6 3.4433 -0.0538 -1.3586 6 1 4.1497 -0.7685 -0.9363 7 6 3.7948 0.2401 -2.8184 8 6 3.9098 -1.0561 -3.5782 9 8 3.7281 -2.1113 -3.0083 10 7 4.2146 -1.0431 -4.8910 11 6 4.4034 -2.0846 -5.9194 12 6 4.0341 -0.9944 -6.9416 13 7 2.6016 -0.9286 -7.2422 14 6 2.1809 -0.3886 -8.4032 15 8 2.9880 0.0423 -9.1992 16 6 0.7076 -0.3215 -8.7126 17 16 0.4657 0.4503 -10.3319 18 6 -1.2926 0.4019 -10.4344 19 1 -1.8692 -0.0229 -9.6259 20 6 -1.9367 0.9085 -11.5546 21 7 -1.2341 1.4257 -12.5401 22 14 -3.8009 0.8579 -11.6629 23 1 -4.3513 0.2318 -10.4340 24 1 -4.3270 2.2405 -11.7929 25 1 -4.2063 0.0605 -12.8484 26 6 4.4936 0.0186 -5.8774 27 6 2.0014 -0.5952 -1.2527 28 1 -0.3633 0.5118 -0.8911 29 1 -0.3633 -1.0277 0.0023 30 1 -0.3633 0.5158 0.8889 31 1 2.0080 1.7916 1.0121 32 1 1.4104 2.0230 -0.6590 33 1 4.1483 1.1749 0.2934 34 1 3.6954 2.0994 -1.1696 35 1 4.7445 0.7731 -2.8632 36 1 3.0122 0.8542 -3.2639 37 1 3.6781 -2.8961 -5.8611 38 1 5.4309 -2.4380 -6.0059 39 1 4.6561 -1.0032 -7.8367 40 1 1.9562 -1.2737 -6.6057 41 1 0.2926 -1.3294 -8.7253 42 1 0.2025 0.2698 -7.9489 43 1 -1.6842 1.7801 -13.3229 44 1 5.5481 0.2844 -5.9503 45 1 3.8402 0.8862 -5.7857 46 1 1.4099 -0.2712 -2.1090 47 1 2.0079 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530350151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:59 Heat of formation + Delta-G solvation = -31.294498 kcal Electronic energy + Delta-G solvation = -26899.483092 eV Core-core repulsion = 23016.657668 eV Total energy + Delta-G solvation = -3882.825424 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93511 -39.70207 -38.77023 -37.66959 -33.75791 -33.56587 -32.48009 -30.70807 -29.84883 -28.63871 -27.29795 -26.56242 -25.54598 -25.07142 -22.11740 -21.52647 -20.70061 -20.33631 -19.18879 -17.96736 -17.43851 -16.86961 -16.59733 -16.13274 -15.97357 -15.64280 -15.37173 -14.99163 -14.85242 -14.79532 -14.35461 -14.01494 -13.60540 -13.44295 -13.33946 -13.18055 -13.16006 -12.64918 -12.59200 -12.43408 -12.27236 -11.93185 -11.82616 -11.71491 -11.54450 -11.43709 -11.19774 -11.10841 -11.07407 -10.85369 -10.80603 -9.99009 -9.86348 -9.61402 -9.19499 -9.11635 -8.99429 -8.84054 -8.30845 -6.56493 -6.27049 -3.98077 2.33070 2.47532 2.86040 2.88397 3.18179 3.23614 3.28206 3.56665 3.69890 3.94232 4.15118 4.17737 4.25376 4.40846 4.50328 4.61954 4.79312 4.91141 4.96612 4.99763 5.01626 5.07139 5.08597 5.10606 5.13219 5.18031 5.24627 5.28902 5.32637 5.38641 5.45116 5.48921 5.54207 5.57080 5.66135 5.71656 5.79409 5.82919 5.97700 6.05763 6.44456 6.48585 6.66252 7.34382 7.52018 7.55413 7.86960 8.30336 8.43313 9.18782 10.80404 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.002292 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.498642 B =12211.474179 C =14061.723018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.518 5.518 3 C 0.029 3.971 4 C -0.122 4.122 5 C -0.076 4.076 6 H 0.089 0.911 7 C -0.129 4.129 8 C 0.535 3.465 9 O -0.537 6.537 10 N -0.647 5.647 11 C 0.099 3.901 12 C 0.115 3.885 13 N -0.720 5.720 14 C 0.537 3.463 15 O -0.512 6.512 16 C -0.154 4.154 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.279 1.279 26 C 0.085 3.915 27 C 0.042 3.958 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.401 0.599 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.041 0.959 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.191 -1.892 23.007 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.242 5.242 3 C -0.099 4.099 4 C -0.160 4.160 5 C -0.095 4.095 6 H 0.107 0.893 7 C -0.169 4.169 8 C 0.325 3.675 9 O -0.414 6.414 10 N -0.384 5.384 11 C -0.024 4.024 12 C 0.007 3.993 13 N -0.374 5.374 14 C 0.323 3.677 15 O -0.386 6.386 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.039 4.039 27 C -0.085 4.085 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.139 0.861 40 H 0.236 0.764 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.059 0.941 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.514 -1.953 22.494 25.815 hybrid contribution -2.729 -0.136 0.410 2.763 sum 9.785 -2.089 22.904 24.994 Atomic orbital electron populations 1.22509 0.87916 1.02395 1.00802 1.65398 1.08286 1.15066 1.35458 1.23137 0.95179 0.90411 1.01151 1.22399 0.96822 0.97092 0.99659 1.21654 0.97801 0.97356 0.92726 0.89267 1.21794 1.04119 0.95526 0.95502 1.20405 0.75913 0.91536 0.79664 1.90719 1.50486 1.33251 1.66959 1.50181 1.69863 1.10779 1.07622 1.23560 1.02566 0.93350 0.82892 1.22316 0.84417 0.94668 0.97895 1.45703 1.06177 1.64326 1.21197 1.20373 0.90986 0.76152 0.80150 1.90709 1.55760 1.45232 1.46877 1.23536 0.93733 1.05798 1.07404 1.85384 1.08293 1.77091 1.12411 1.22896 0.91304 1.46766 1.07418 0.90869 1.24992 0.99428 0.94487 0.94670 1.70019 1.35787 1.37345 1.07089 0.86113 0.83086 0.78009 0.78269 1.19614 1.20540 1.20523 1.23854 1.01894 0.93469 0.84665 1.23192 0.93877 1.01125 0.90338 0.95248 0.91137 0.91308 0.90145 0.93764 0.90663 0.90973 0.88638 0.88938 0.89422 0.88328 0.86060 0.76444 0.89063 0.89190 0.92187 0.88425 0.89389 0.94070 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.53 60.07 0.57 0.67 16 2 N -0.52 -4.86 5.66 -238.22 -1.35 -6.21 16 3 C 0.03 0.22 6.49 -2.18 -0.01 0.21 16 4 C -0.12 -0.82 6.65 -25.34 -0.17 -0.99 16 5 C -0.08 -0.64 2.66 -89.23 -0.24 -0.87 16 6 H 0.09 0.86 7.91 -51.93 -0.41 0.45 16 7 C -0.13 -0.98 4.63 -27.89 -0.13 -1.11 16 8 C 0.53 5.51 7.86 -10.99 -0.09 5.43 16 9 O -0.54 -7.39 15.68 5.55 0.09 -7.31 16 10 N -0.65 -5.74 3.61 -178.55 -0.64 -6.38 16 11 C 0.10 0.80 8.58 -2.97 -0.03 0.78 16 12 C 0.11 1.07 4.40 -70.14 -0.31 0.76 16 13 N -0.72 -8.46 5.38 -55.34 -0.30 -8.76 16 14 C 0.54 9.04 7.85 -10.99 -0.09 8.95 16 15 O -0.51 -10.49 15.48 5.56 0.09 -10.41 16 16 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 17 S -0.06 -1.52 20.57 -107.50 -2.21 -3.74 16 18 C -0.54 -14.90 9.50 30.94 0.29 -14.61 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.06 5.49 -17.44 -0.10 1.96 16 21 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 22 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.09 0.65 8.42 -2.98 -0.03 0.62 16 27 C 0.04 0.42 5.18 -2.18 -0.01 0.40 16 28 H 0.03 0.24 7.97 -51.93 -0.41 -0.18 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.33 7.98 -51.93 -0.41 -0.09 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.39 7.71 -51.93 -0.40 -0.01 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.65 7.98 -51.93 -0.41 0.24 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.12 1.21 7.51 -51.93 -0.39 0.82 16 40 H 0.40 4.09 8.74 -40.82 -0.36 3.73 16 41 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 42 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.04 0.41 7.51 -51.93 -0.39 0.02 16 47 H 0.09 1.04 7.74 -51.93 -0.40 0.64 16 LS Contribution 400.59 15.07 6.04 6.04 Total: -1.00 -35.14 400.59 -10.47 -45.61 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.79 Total: 0.52 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.10 Total: -0.50 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -1.56 Total: -46.26 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.17 Total: -17.71 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.14 -10.47 -45.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530350151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.319 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds