Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48565 * 111.00040 * 2 1 4 4 C 1.54380 * 104.59741 * 200.96191 * 3 2 1 5 5 C 1.54267 * 105.05931 * 23.85252 * 4 3 2 6 6 H 1.08993 * 110.31892 * 241.00398 * 5 4 3 7 7 C 1.52999 * 110.32275 * 118.89594 * 5 4 3 8 8 C 1.50692 * 109.47192 * 174.99920 * 7 5 4 9 9 O 1.21291 * 119.99901 * 0.02562 * 8 7 5 10 10 N 1.34777 * 120.00261 * 180.02562 * 8 7 5 11 11 C 1.47585 * 134.49353 * 180.02562 * 10 8 7 12 12 C 1.53947 * 86.11441 * 155.36057 * 11 10 8 13 13 N 1.46510 * 113.74068 * 269.15382 * 12 11 10 14 14 C 1.34775 * 119.99672 * 203.07479 * 13 12 11 15 15 O 1.21276 * 120.00127 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99650 * 179.97438 * 14 13 12 17 17 S 1.81007 * 109.47134 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00186 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99674 * 359.97438 * 18 17 16 20 20 C 1.38792 * 120.00205 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00067 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47338 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47084 * 120.00058 * 22 20 18 25 25 H 1.48508 * 109.46871 * 239.99548 * 22 20 18 26 26 C 1.47580 * 134.49108 * 0.02562 * 10 8 7 27 27 C 1.48559 * 110.99779 * 244.58611 * 2 1 3 28 28 H 1.08996 * 109.47031 * 60.12728 * 1 2 3 29 29 H 1.09002 * 109.46750 * 180.12596 * 1 2 3 30 30 H 1.08997 * 109.46812 * 300.12428 * 1 2 3 31 31 H 1.08996 * 110.40707 * 82.18169 * 3 2 1 32 32 H 1.09002 * 110.51004 * 319.79625 * 3 2 1 33 33 H 1.08996 * 110.31894 * 264.95883 * 4 3 2 34 34 H 1.08995 * 110.40809 * 142.79041 * 4 3 2 35 35 H 1.09001 * 109.46770 * 54.99468 * 7 5 4 36 36 H 1.08999 * 109.47079 * 295.00060 * 7 5 4 37 37 H 1.08996 * 113.76681 * 41.05704 * 11 10 8 38 38 H 1.08997 * 113.86988 * 269.67617 * 11 10 8 39 39 H 1.09002 * 113.73955 * 137.95260 * 12 11 10 40 40 H 0.96993 * 119.99587 * 23.07212 * 13 12 11 41 41 H 1.09003 * 109.47152 * 300.00016 * 16 14 13 42 42 H 1.08991 * 109.47229 * 60.00268 * 16 14 13 43 43 H 0.97002 * 120.00088 * 180.02562 * 21 20 18 44 44 H 1.08996 * 113.77201 * 90.33634 * 26 10 8 45 45 H 1.09002 * 113.76575 * 318.93589 * 26 10 8 46 46 H 1.08998 * 110.41948 * 40.25800 * 27 2 1 47 47 H 1.09006 * 110.40910 * 277.81301 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0015 1.3870 0.0000 4 6 3.4433 1.2502 -0.5345 5 6 3.4433 -0.0538 -1.3586 6 1 4.1497 -0.7685 -0.9363 7 6 3.7948 0.2401 -2.8184 8 6 3.9098 -1.0561 -3.5782 9 8 3.7281 -2.1113 -3.0083 10 7 4.2146 -1.0431 -4.8910 11 6 4.4034 -2.0846 -5.9194 12 6 4.0341 -0.9944 -6.9416 13 7 2.6016 -0.9286 -7.2422 14 6 2.1809 -0.3886 -8.4032 15 8 2.9880 0.0423 -9.1992 16 6 0.7076 -0.3215 -8.7126 17 16 0.4657 0.4503 -10.3319 18 6 -1.2926 0.4019 -10.4344 19 1 -1.8692 -0.0229 -9.6259 20 6 -1.9367 0.9085 -11.5546 21 7 -1.2341 1.4257 -12.5401 22 14 -3.8009 0.8579 -11.6629 23 1 -4.3513 0.2318 -10.4340 24 1 -4.3270 2.2405 -11.7929 25 1 -4.2063 0.0605 -12.8484 26 6 4.4936 0.0186 -5.8774 27 6 2.0014 -0.5952 -1.2527 28 1 -0.3633 0.5118 -0.8911 29 1 -0.3633 -1.0277 0.0023 30 1 -0.3633 0.5158 0.8889 31 1 2.0080 1.7916 1.0121 32 1 1.4104 2.0230 -0.6590 33 1 4.1483 1.1749 0.2934 34 1 3.6954 2.0994 -1.1696 35 1 4.7445 0.7731 -2.8632 36 1 3.0122 0.8542 -3.2639 37 1 3.6781 -2.8961 -5.8611 38 1 5.4309 -2.4380 -6.0059 39 1 4.6561 -1.0032 -7.8367 40 1 1.9562 -1.2737 -6.6057 41 1 0.2926 -1.3294 -8.7253 42 1 0.2025 0.2698 -7.9489 43 1 -1.6842 1.7801 -13.3229 44 1 5.5481 0.2844 -5.9503 45 1 3.8402 0.8862 -5.7857 46 1 1.4099 -0.2712 -2.1090 47 1 2.0079 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530350151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = -57.747565 kcal Electronic energy + Delta-G solvation = -26900.630183 eV Core-core repulsion = 23016.657668 eV Total energy + Delta-G solvation = -3883.972515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75259 -40.59414 -39.74926 -38.57185 -34.76164 -34.58201 -34.37965 -31.59482 -30.80757 -29.65239 -28.03895 -27.64399 -27.21080 -25.72472 -23.04196 -22.19980 -21.80116 -21.01659 -19.95573 -19.83312 -18.25708 -17.96999 -17.36871 -17.22197 -16.88440 -16.74524 -16.55381 -16.38831 -15.94733 -15.90422 -15.39049 -14.96313 -14.75961 -14.54973 -14.24538 -14.17106 -13.98373 -13.86918 -13.44493 -13.28007 -13.16457 -13.08717 -12.92873 -12.84527 -12.61094 -12.44603 -12.35763 -12.26882 -12.10248 -11.83313 -11.72260 -11.47533 -11.16415 -11.03235 -10.79462 -10.28448 -10.20852 -9.77464 -9.52484 -8.66043 -8.35689 -6.12737 1.25582 1.40469 1.45689 1.54826 1.56702 1.59465 1.78090 2.17854 2.26837 2.98755 3.05481 3.25246 3.29864 3.46353 3.62721 3.76455 3.85351 3.91604 3.94351 4.22312 4.27278 4.29116 4.34960 4.38649 4.44206 4.48935 4.50429 4.51383 4.59513 4.61888 4.64999 4.72582 4.78676 4.80074 4.86183 4.93361 4.96282 5.04265 5.22180 5.31066 5.41846 5.45855 5.83493 6.00876 6.19367 6.39274 6.63552 7.06423 7.11357 7.17326 8.73528 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.002292 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.498642 B =12211.474179 C =14061.723018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.535 5.535 3 C 0.027 3.973 4 C -0.115 4.115 5 C -0.074 4.074 6 H 0.072 0.928 7 C -0.122 4.122 8 C 0.529 3.471 9 O -0.580 6.580 10 N -0.648 5.648 11 C 0.104 3.896 12 C 0.104 3.896 13 N -0.699 5.699 14 C 0.544 3.456 15 O -0.553 6.553 16 C -0.133 4.133 17 S -0.142 6.142 18 C -0.547 4.547 19 H 0.080 0.920 20 C 0.015 3.985 21 N -0.909 5.909 22 Si 0.996 3.004 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.096 3.904 27 C 0.046 3.954 28 H 0.028 0.972 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.411 0.589 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.127 0.873 45 H 0.089 0.911 46 H 0.036 0.964 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.184 -1.334 24.590 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.259 5.259 3 C -0.101 4.101 4 C -0.153 4.153 5 C -0.093 4.093 6 H 0.090 0.910 7 C -0.161 4.161 8 C 0.321 3.679 9 O -0.460 6.460 10 N -0.384 5.384 11 C -0.019 4.019 12 C -0.002 4.002 13 N -0.351 5.351 14 C 0.330 3.670 15 O -0.430 6.430 16 C -0.284 4.284 17 S 0.085 5.915 18 C -0.694 4.694 19 H 0.098 0.902 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.818 3.182 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.027 4.027 27 C -0.082 4.082 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.248 0.752 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.145 0.855 45 H 0.108 0.892 46 H 0.054 0.946 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.524 -1.402 24.114 27.208 hybrid contribution -2.650 -0.388 0.013 2.679 sum 9.874 -1.790 24.127 26.130 Atomic orbital electron populations 1.22528 0.87466 1.02315 1.01327 1.65381 1.08938 1.16423 1.35161 1.23219 0.95634 0.89354 1.01858 1.22397 0.96393 0.96670 0.99842 1.21594 0.96201 0.97821 0.93695 0.90990 1.21799 1.05697 0.94302 0.94339 1.20888 0.75181 0.91898 0.79961 1.90708 1.52464 1.34885 1.67909 1.50251 1.69152 1.11526 1.07454 1.23636 1.03761 0.92684 0.81773 1.22525 0.82433 0.96685 0.98571 1.45436 1.07872 1.62374 1.19440 1.19921 0.89590 0.76383 0.81111 1.90702 1.56244 1.47533 1.48564 1.23385 0.96093 1.05922 1.03038 1.85490 1.08764 1.78724 1.18532 1.23223 0.91707 1.46681 1.07834 0.90169 1.26076 1.04943 0.93848 0.94158 1.70170 1.38087 1.38461 1.07867 0.84944 0.76265 0.78277 0.78705 1.18263 1.19877 1.19977 1.23935 1.03606 0.92585 0.82559 1.23070 0.95073 0.99639 0.90459 0.95293 0.91605 0.90141 0.89311 0.93428 0.90124 0.88997 0.86138 0.87941 0.90101 0.85917 0.86384 0.75247 0.87558 0.87444 0.91963 0.85487 0.89221 0.94551 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.53 127.69 1.22 1.41 16 2 N -0.54 -9.71 5.66 -907.59 -5.14 -14.84 16 3 C 0.03 0.36 6.49 86.45 0.56 0.92 16 4 C -0.12 -1.29 6.65 31.49 0.21 -1.08 16 5 C -0.07 -1.15 2.66 -9.89 -0.03 -1.17 16 6 H 0.07 1.38 7.91 -2.39 -0.02 1.36 16 7 C -0.12 -1.56 4.63 29.85 0.14 -1.42 16 8 C 0.53 10.10 7.86 87.65 0.69 10.79 16 9 O -0.58 -15.84 15.68 -3.06 -0.05 -15.88 16 10 N -0.65 -9.94 3.61 -837.18 -3.02 -12.96 16 11 C 0.10 1.45 8.58 86.48 0.74 2.19 16 12 C 0.10 1.72 4.40 46.75 0.21 1.93 16 13 N -0.70 -15.18 5.38 -447.38 -2.41 -17.58 16 14 C 0.54 17.83 7.85 87.66 0.69 18.52 16 15 O -0.55 -22.69 15.48 -3.02 -0.05 -22.73 16 16 C -0.13 -4.96 6.16 71.23 0.44 -4.52 16 17 S -0.14 -7.58 20.57 -56.49 -1.16 -8.74 16 18 C -0.55 -30.52 9.50 67.95 0.65 -29.88 16 19 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 20 C 0.01 0.82 5.49 84.86 0.47 1.29 16 21 N -0.91 -54.72 13.22 21.65 0.29 -54.43 16 22 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 C 0.10 1.16 8.42 86.48 0.73 1.89 16 27 C 0.05 0.89 5.18 86.45 0.45 1.34 16 28 H 0.03 0.45 7.97 -2.39 -0.02 0.43 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.05 0.61 7.98 -2.39 -0.02 0.59 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.68 7.71 -2.39 -0.02 0.66 16 35 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 1.15 7.98 -2.39 -0.02 1.13 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 2.15 7.51 -2.39 -0.02 2.14 16 40 H 0.41 7.52 8.74 -92.71 -0.81 6.71 16 41 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 42 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 43 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.04 0.72 7.51 -2.39 -0.02 0.70 16 47 H 0.06 1.55 7.74 -2.38 -0.02 1.53 16 Total: -1.00 -78.85 400.59 -2.20 -81.05 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.15 Total: 18.93 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 7.15 Total: 2.21 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -10.28 Total: -99.81 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.09 Total: -38.62 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.74 kcal Total: -78.85 -2.20 -81.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530350151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.303 kcal (2) G-P(sol) polarization free energy of solvation -78.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds