Wall clock time and date at job start Sat Apr 11 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99987 * 2 1 4 4 O 1.21278 * 120.00052 * 5.80758 * 3 2 1 5 5 C 1.50706 * 119.99930 * 185.80912 * 3 2 1 6 6 H 1.09001 * 110.28752 * 49.73247 * 5 3 2 7 7 C 1.54258 * 110.32576 * 171.86510 * 5 3 2 8 8 C 1.54372 * 105.06117 * 118.89273 * 7 5 3 9 9 N 1.48558 * 104.59803 * 23.85418 * 8 7 5 10 10 C 1.46895 * 111.00561 * 200.95783 * 9 8 7 11 11 C 1.48563 * 104.22023 * 320.51452 * 9 8 7 12 12 C 1.46497 * 119.99765 * 179.97438 * 2 1 3 13 13 C 1.53499 * 114.20985 * 300.00316 * 12 2 1 14 14 N 1.47063 * 87.98546 * 87.71586 * 13 12 2 15 15 C 1.34780 * 136.06052 * 207.08333 * 14 13 12 16 16 O 1.21289 * 119.99703 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00244 * 180.27936 * 15 14 13 18 18 S 1.81003 * 109.47005 * 179.72706 * 17 15 14 19 19 C 1.76194 * 99.99813 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00331 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00076 * 179.97438 * 19 18 17 22 22 N 1.31630 * 120.00135 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00064 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47223 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47050 * 120.00451 * 23 21 19 26 26 H 1.48498 * 109.47113 * 240.00047 * 23 21 19 27 27 C 1.47064 * 87.88478 * 27.34301 * 14 13 12 28 28 H 1.09000 * 109.47386 * 264.92310 * 1 2 3 29 29 H 1.09000 * 109.46690 * 24.92420 * 1 2 3 30 30 H 1.09001 * 109.47176 * 144.92301 * 1 2 3 31 31 H 1.08995 * 110.32136 * 237.79322 * 7 5 3 32 32 H 1.09006 * 110.32044 * 359.89696 * 7 5 3 33 33 H 1.09004 * 110.40729 * 142.63351 * 8 7 5 34 34 H 1.09005 * 110.41508 * 265.07198 * 8 7 5 35 35 H 1.09001 * 109.46850 * 60.11784 * 10 9 8 36 36 H 1.08996 * 109.47595 * 180.12425 * 10 9 8 37 37 H 1.09005 * 109.47198 * 300.13012 * 10 9 8 38 38 H 1.08997 * 110.41430 * 280.70357 * 11 9 8 39 39 H 1.09003 * 110.41320 * 158.25972 * 11 9 8 40 40 H 1.08998 * 113.28400 * 166.93509 * 12 2 1 41 41 H 1.09002 * 113.46591 * 332.93985 * 13 12 2 42 42 H 1.09000 * 113.47286 * 202.49882 * 13 12 2 43 43 H 1.09006 * 109.46640 * 299.72692 * 17 15 14 44 44 H 1.08997 * 109.46958 * 59.72750 * 17 15 14 45 45 H 0.96994 * 120.00335 * 179.97438 * 22 21 19 46 46 H 1.09005 * 113.46910 * 87.43788 * 27 14 13 47 47 H 1.09004 * 113.47263 * 217.87409 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5372 2.2148 0.1063 5 6 3.6401 1.1705 -0.1321 6 1 3.9468 0.5508 -0.9748 7 6 4.1591 2.6122 -0.3102 8 6 5.0831 2.8585 0.9016 9 7 5.5137 1.5015 1.3261 10 6 5.9752 1.5077 2.7207 11 6 4.2942 0.6670 1.1725 12 6 2.1975 -1.2687 0.0006 13 6 1.9059 -2.1633 1.2133 14 7 0.7772 -2.7291 0.4592 15 6 -0.4053 -3.2995 0.7643 16 8 -0.7319 -3.4346 1.9245 17 6 -1.3189 -3.7745 -0.3360 18 16 -2.8125 -4.4953 0.3891 19 6 -3.6749 -4.9523 -1.0778 20 1 -3.2364 -4.7566 -2.0452 21 6 -4.9178 -5.5638 -0.9902 22 7 -5.4525 -5.8020 0.1888 23 14 -5.8324 -6.0477 -2.5455 24 1 -5.0226 -5.6735 -3.7326 25 1 -6.0643 -7.5145 -2.5473 26 1 -7.1372 -5.3403 -2.5928 27 6 1.5094 -2.4046 -0.7742 28 1 -0.3634 -0.0909 1.0236 29 1 -0.3633 0.9320 -0.4331 30 1 -0.3633 -0.8410 -0.5906 31 1 4.7220 2.6997 -1.2395 32 1 3.3279 3.3173 -0.3040 33 1 5.9457 3.4561 0.6067 34 1 4.5344 3.3516 1.7041 35 1 5.1632 1.8340 3.3705 36 1 6.2865 0.5025 3.0049 37 1 6.8182 2.1913 2.8214 38 1 3.6220 0.8170 2.0173 39 1 4.5628 -0.3855 1.0816 40 1 3.2575 -1.1544 -0.2258 41 1 1.6004 -1.6071 2.0996 42 1 2.6956 -2.8857 1.4199 43 1 -1.5932 -2.9312 -0.9699 44 1 -0.8059 -4.5273 -0.9346 45 1 -6.3212 -6.2290 0.2500 46 1 2.1946 -3.1906 -1.0918 47 1 0.8662 -2.0540 -1.5814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536370368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:06 Heat of formation + Delta-G solvation = -33.601665 kcal Electronic energy + Delta-G solvation = -27860.972151 eV Core-core repulsion = 23978.046681 eV Total energy + Delta-G solvation = -3882.925471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.22759 -40.89301 -39.24376 -38.78319 -35.55245 -34.60717 -33.36124 -32.00775 -30.53691 -29.24850 -28.01011 -27.68063 -26.96570 -26.47599 -23.82244 -22.44464 -22.19389 -20.82661 -19.78542 -19.22331 -18.71112 -18.10843 -17.12916 -17.01171 -16.98137 -16.89440 -16.69819 -16.37263 -15.86380 -15.74754 -15.26791 -15.20191 -14.71296 -14.58850 -14.31528 -14.19254 -14.09106 -13.70953 -13.49806 -13.43861 -13.20315 -13.08510 -12.97580 -12.93173 -12.61882 -12.59661 -12.36038 -12.24660 -12.18141 -12.12574 -11.73595 -11.70360 -11.17969 -11.08011 -10.88622 -10.30404 -9.90052 -9.76689 -9.55415 -8.70400 -8.36871 -6.15580 1.19880 1.40182 1.40547 1.42109 1.53675 1.56692 1.75559 1.97782 2.25097 2.97535 2.97835 3.17312 3.22534 3.43475 3.52561 3.57103 3.67519 3.90055 3.99999 4.16838 4.21816 4.25984 4.32261 4.38585 4.43946 4.44677 4.48763 4.51710 4.54875 4.59030 4.62956 4.71013 4.76436 4.81152 4.86082 4.91663 5.00587 5.04388 5.09623 5.16346 5.29571 5.39901 5.76394 5.95866 6.17883 6.24659 6.57869 6.99421 7.04539 7.09956 8.72620 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.002198 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.990823 B =12733.867131 C =13205.172065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.590 5.590 3 C 0.521 3.479 4 O -0.577 6.577 5 C -0.107 4.107 6 H 0.144 0.856 7 C -0.117 4.117 8 C 0.030 3.970 9 N -0.514 5.514 10 C 0.010 3.990 11 C 0.043 3.957 12 C 0.108 3.892 13 C 0.087 3.913 14 N -0.653 5.653 15 C 0.561 3.439 16 O -0.570 6.570 17 C -0.117 4.117 18 S -0.154 6.154 19 C -0.543 4.543 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.275 1.275 27 C 0.090 3.910 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.030 0.970 35 H 0.020 0.980 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.122 0.878 40 H 0.176 0.824 41 H 0.056 0.944 42 H 0.134 0.866 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.145 0.855 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.537 13.360 -4.907 31.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.321 5.321 3 C 0.311 3.689 4 O -0.456 6.456 5 C -0.129 4.129 6 H 0.162 0.838 7 C -0.156 4.156 8 C -0.097 4.097 9 N -0.237 5.237 10 C -0.139 4.139 11 C -0.086 4.086 12 C 0.003 3.997 13 C -0.036 4.036 14 N -0.390 5.390 15 C 0.351 3.649 16 O -0.449 6.449 17 C -0.268 4.268 18 S 0.074 5.926 19 C -0.690 4.690 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.201 1.201 27 C -0.032 4.032 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.049 0.951 35 H 0.038 0.962 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.140 0.860 40 H 0.193 0.807 41 H 0.075 0.925 42 H 0.151 0.849 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.162 0.838 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 27.840 13.362 -3.296 31.056 hybrid contribution -1.835 0.116 -0.819 2.013 sum 26.005 13.478 -4.115 29.578 Atomic orbital electron populations 1.21481 0.80104 1.02753 1.00781 1.47549 1.06289 1.05912 1.72354 1.21169 0.91236 0.82199 0.74316 1.90684 1.71266 1.32753 1.50933 1.22171 0.88118 1.00757 1.01811 0.83845 1.22332 0.99064 0.94571 0.99601 1.23177 0.98674 0.91403 0.96491 1.65484 1.28349 1.08062 1.21844 1.22584 1.00103 1.03800 0.87386 1.23250 0.90511 1.00491 0.94319 1.22803 0.98856 0.81847 0.96161 1.23779 0.87796 0.95336 0.96729 1.49685 1.15693 1.60315 1.13283 1.19561 0.80843 0.75746 0.88795 1.90706 1.74811 1.56679 1.22717 1.23263 0.98873 1.04312 1.00392 1.85642 1.15670 1.77171 1.14161 1.23199 1.06766 1.45999 0.93083 0.89875 1.26150 0.97408 0.94758 1.00947 1.70189 1.17841 1.41059 1.25736 0.84893 0.77750 0.78001 0.77230 1.17883 1.19862 1.20062 1.23878 0.94404 0.96367 0.88575 0.95112 0.91290 0.90637 0.88438 0.91407 0.88500 0.95134 0.96174 0.89783 0.90313 0.95139 0.85999 0.80668 0.92501 0.84881 0.87966 0.87361 0.91991 0.83769 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.25 9.45 127.77 1.21 3.46 16 2 N -0.59 -10.47 3.12 -821.40 -2.56 -13.03 16 3 C 0.52 10.11 6.85 87.66 0.60 10.71 16 4 O -0.58 -16.77 14.85 -3.02 -0.04 -16.82 16 5 C -0.11 -1.18 2.48 -10.64 -0.03 -1.21 16 6 H 0.14 0.61 7.36 -2.39 -0.02 0.60 16 7 C -0.12 -1.52 6.58 31.49 0.21 -1.31 16 8 C 0.03 0.38 6.49 86.45 0.56 0.94 16 9 N -0.51 -5.75 5.66 -907.63 -5.14 -10.88 16 10 C 0.01 0.10 9.53 127.69 1.22 1.31 16 11 C 0.04 0.42 5.16 86.45 0.45 0.87 16 12 C 0.11 1.04 4.01 45.55 0.18 1.23 16 13 C 0.09 1.33 8.24 83.18 0.69 2.02 16 14 N -0.65 -15.12 2.43 -857.88 -2.09 -17.21 16 15 C 0.56 20.57 7.87 87.66 0.69 21.26 16 16 O -0.57 -27.02 16.64 -3.06 -0.05 -27.07 16 17 C -0.12 -4.60 5.98 71.24 0.43 -4.18 16 18 S -0.15 -8.54 20.57 -56.49 -1.16 -9.71 16 19 C -0.54 -30.79 9.50 67.95 0.65 -30.15 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -56.08 13.22 21.65 0.29 -55.80 16 23 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 27 C 0.09 1.02 7.47 83.26 0.62 1.64 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.80 7.36 -2.39 -0.02 1.78 16 30 H 0.08 1.78 5.74 -2.39 -0.01 1.77 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.27 6.50 -2.38 -0.02 1.26 16 33 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.03 0.47 7.97 -2.38 -0.02 0.45 16 35 H 0.02 0.24 7.97 -2.39 -0.02 0.22 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.03 0.44 7.61 -2.39 -0.02 0.42 16 39 H 0.12 0.47 7.10 -2.39 -0.02 0.46 16 40 H 0.18 0.09 5.03 -2.39 -0.01 0.07 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 44 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.14 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.09 1.06 7.22 -2.39 -0.02 1.05 16 Total: -1.00 -87.50 389.86 0.17 -87.33 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.97 Total: 10.01 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 7.93 Total: 7.74 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -9.50 Total: -96.92 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.10 Total: -43.89 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.71 kcal Total: -87.50 0.17 -87.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536370368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.728 kcal (2) G-P(sol) polarization free energy of solvation -87.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds