Wall clock time and date at job start Sat Apr 11 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46760 * 124.34629 * 2 1 4 4 C 1.54487 * 105.47175 * 197.03935 * 3 2 1 5 5 C 1.54633 * 101.76418 * 334.58947 * 4 3 2 6 6 H 1.08995 * 110.59536 * 143.53016 * 5 4 3 7 7 N 1.46899 * 110.48281 * 266.11788 * 5 4 3 8 8 C 1.46847 * 110.99299 * 52.02245 * 7 5 4 9 9 C 1.53041 * 109.51486 * 185.84807 * 8 7 5 10 10 C 1.53120 * 109.27703 * 300.81824 * 9 8 7 11 11 C 1.53119 * 109.16202 * 57.65829 * 10 9 8 12 12 H 1.08996 * 109.50916 * 62.28058 * 11 10 9 13 13 N 1.46505 * 109.50608 * 182.40525 * 11 10 9 14 14 C 1.34772 * 119.99672 * 274.79878 * 13 11 10 15 15 O 1.21284 * 119.99865 * 359.97438 * 14 13 11 16 16 C 1.50703 * 120.00071 * 179.97438 * 14 13 11 17 17 S 1.80999 * 109.46937 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99533 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00143 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99637 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99653 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00320 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.46930 * 90.00349 * 22 20 18 24 24 H 1.48497 * 109.47369 * 210.00130 * 22 20 18 25 25 H 1.48501 * 109.47155 * 330.00262 * 22 20 18 26 26 C 1.46847 * 110.99862 * 176.23087 * 7 5 4 27 27 C 1.34415 * 124.34757 * 180.02562 * 2 1 3 28 28 O 1.21278 * 124.94377 * 359.59841 * 27 2 1 29 29 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46838 * 299.99706 * 1 2 3 31 31 H 1.08994 * 109.47435 * 59.99384 * 1 2 3 32 32 H 1.09001 * 110.25215 * 316.04199 * 3 2 1 33 33 H 1.09001 * 110.24796 * 77.95939 * 3 2 1 34 34 H 1.09000 * 110.96965 * 216.46727 * 4 3 2 35 35 H 1.08999 * 110.96698 * 92.70590 * 4 3 2 36 36 H 1.09005 * 109.46836 * 65.83946 * 8 7 5 37 37 H 1.08994 * 109.46332 * 305.85962 * 8 7 5 38 38 H 1.08996 * 109.50341 * 180.87808 * 9 8 7 39 39 H 1.08996 * 109.50165 * 60.75338 * 9 8 7 40 40 H 1.08993 * 109.52850 * 297.74913 * 10 9 8 41 41 H 1.09003 * 109.52252 * 177.55881 * 10 9 8 42 42 H 0.96998 * 119.99773 * 94.79723 * 13 11 10 43 43 H 1.09005 * 109.46857 * 299.99925 * 16 14 13 44 44 H 1.08997 * 109.46762 * 59.99810 * 16 14 13 45 45 H 0.97009 * 119.99816 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.46448 * 54.14158 * 26 7 5 47 47 H 1.08994 * 109.45958 * 294.16523 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7009 0.7488 -0.4363 5 6 3.6898 -0.7379 -0.0111 6 1 4.2328 -1.3473 -0.7335 7 7 4.2693 -0.8934 1.3297 8 6 3.6288 0.0161 2.2884 9 6 4.3521 -0.0678 3.6344 10 6 4.2933 -1.5081 4.1510 11 6 4.9231 -2.4406 3.1126 12 1 5.9726 -2.1790 2.9775 13 7 4.8193 -3.8273 3.5736 14 6 5.7550 -4.3344 4.4005 15 8 6.6832 -3.6428 4.7626 16 6 5.6479 -5.7607 4.8753 17 16 7.0427 -6.1403 5.9645 18 6 6.6745 -7.8174 6.3598 19 1 5.7955 -8.2893 5.9461 20 6 7.5146 -8.5324 7.2020 21 7 7.2398 -9.7855 7.4969 22 14 9.0361 -7.7169 7.9160 23 1 8.6926 -7.0759 9.2108 24 1 10.0898 -8.7402 8.1344 25 1 9.5352 -6.6864 6.9703 26 6 4.1832 -2.2879 1.7817 27 6 2.2234 -1.1098 -0.0005 28 8 1.7946 -2.2442 0.0060 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8981 1.9386 -0.7098 33 1 2.3297 1.6435 1.0002 34 1 4.4754 1.3010 0.0959 35 1 3.8263 0.8452 -1.5147 36 1 2.5849 -0.2698 2.4187 37 1 3.6812 1.0372 1.9110 38 1 3.8670 0.5956 4.3503 39 1 5.3926 0.2310 3.5076 40 1 3.2544 -1.7942 4.3149 41 1 4.8446 -1.5816 5.0885 42 1 4.0770 -4.3805 3.2837 43 1 4.7141 -5.8925 5.4219 44 1 5.6640 -6.4316 4.0164 45 1 7.8272 -10.2854 8.0853 46 1 4.6382 -2.9401 1.0362 47 1 3.1368 -2.5627 1.9143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567759999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:12 Heat of formation + Delta-G solvation = -56.111083 kcal Electronic energy + Delta-G solvation = -27874.650901 eV Core-core repulsion = 23990.749348 eV Total energy + Delta-G solvation = -3883.901552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.63679 -39.62518 -38.12747 -36.91056 -34.87657 -33.34792 -32.40892 -31.62446 -30.45600 -28.27425 -27.79512 -27.07180 -25.58261 -23.97721 -23.21903 -21.90174 -20.61542 -20.33958 -19.44930 -17.87425 -17.74170 -17.16466 -16.42378 -16.14950 -16.13144 -15.33089 -15.10727 -14.95454 -14.84131 -14.56918 -14.32472 -14.12645 -13.85013 -13.78256 -13.42355 -13.30986 -13.07074 -13.05793 -12.79610 -12.76568 -12.65851 -12.12514 -11.94017 -11.74100 -11.51767 -11.24579 -11.14955 -11.03429 -10.97898 -10.74915 -10.59531 -10.52469 -9.82918 -9.46485 -9.23362 -8.98724 -8.92279 -8.73288 -8.46813 -6.88331 -6.26073 -3.97456 2.03691 2.48701 2.75805 3.01354 3.16568 3.35161 3.50009 3.53217 3.74963 3.85185 3.88888 4.30676 4.35769 4.37485 4.47584 4.64374 4.70441 4.76762 4.78971 4.82776 4.88939 4.89802 5.06877 5.12865 5.13023 5.21387 5.23036 5.25594 5.30701 5.38000 5.40921 5.48132 5.58482 5.67955 5.81582 5.84249 5.94102 6.06324 6.08792 6.15681 6.42318 6.48112 6.58168 6.69403 7.66403 7.67427 7.97075 8.44964 8.54338 9.20099 10.83175 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.002126 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.816199 B =13169.407149 C =13656.239668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.622 5.622 3 C 0.093 3.907 4 C -0.129 4.129 5 C 0.055 3.945 6 H 0.121 0.879 7 N -0.502 5.502 8 C 0.040 3.960 9 C -0.113 4.113 10 C -0.134 4.134 11 C 0.153 3.847 12 H 0.098 0.902 13 N -0.733 5.733 14 C 0.534 3.466 15 O -0.518 6.518 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.045 3.955 27 C 0.486 3.514 28 O -0.523 6.523 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.035 0.965 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.399 0.601 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.270 0.730 46 H 0.086 0.914 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.114 27.133 -17.944 35.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.358 5.358 3 C -0.030 4.030 4 C -0.167 4.167 5 C -0.057 4.057 6 H 0.138 0.862 7 N -0.227 5.227 8 C -0.087 4.087 9 C -0.151 4.151 10 C -0.173 4.173 11 C 0.048 3.952 12 H 0.116 0.884 13 N -0.386 5.386 14 C 0.320 3.680 15 O -0.392 6.392 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.083 4.083 27 C 0.271 3.729 28 O -0.398 6.398 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.233 0.767 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.330 27.621 -17.262 34.485 hybrid contribution -1.919 -1.214 -0.090 2.272 sum -13.249 26.407 -17.352 34.263 Atomic orbital electron populations 1.21580 0.78108 1.03854 1.01537 1.48256 1.06562 1.07500 1.73472 1.22342 0.90804 0.87503 1.02310 1.22750 0.96611 0.94401 1.02958 1.22643 0.90699 0.98712 0.93693 0.86163 1.62220 1.53859 1.06210 1.00439 1.22502 0.96041 0.97207 0.92970 1.21540 1.01875 0.96765 0.94924 1.22019 1.01057 0.94459 0.99773 1.20791 1.01522 0.81327 0.91600 0.88400 1.45962 1.28633 1.13264 1.50772 1.20249 0.81314 0.88812 0.77634 1.90693 1.32280 1.60847 1.55400 1.23287 1.05294 0.94931 1.03984 1.84758 1.30716 1.16551 1.59482 1.22328 1.14911 0.94795 1.34799 0.89398 1.24723 0.97629 0.94233 0.94805 1.69947 1.38130 1.08465 1.35207 0.86726 0.82958 0.80626 0.81485 1.19240 1.19973 1.15887 1.22378 1.00123 0.88785 0.97000 1.22038 0.90612 0.84640 0.75570 1.90741 1.78782 1.21012 1.49224 0.89934 0.92036 0.91947 0.90092 0.90533 0.87627 0.88989 0.94687 0.89613 0.91013 0.90407 0.92220 0.90558 0.76728 0.88550 0.88428 0.91975 0.89558 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 11.14 59.85 0.67 1.17 16 2 N -0.62 -4.22 3.17 -180.29 -0.57 -4.80 16 3 C 0.09 0.34 6.46 -3.12 -0.02 0.32 16 4 C -0.13 -0.49 6.20 -25.09 -0.16 -0.65 16 5 C 0.05 0.40 3.29 -67.72 -0.22 0.18 16 6 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 7 N -0.50 -4.27 4.70 -226.70 -1.07 -5.33 16 8 C 0.04 0.30 3.85 -3.83 -0.01 0.28 16 9 C -0.11 -0.95 6.09 -26.65 -0.16 -1.12 16 10 C -0.13 -1.51 5.58 -26.61 -0.15 -1.66 16 11 C 0.15 1.87 2.62 -67.84 -0.18 1.69 16 12 H 0.10 1.40 7.58 -51.93 -0.39 1.00 16 13 N -0.73 -9.98 5.08 -53.72 -0.27 -10.26 16 14 C 0.53 9.70 7.82 -10.99 -0.09 9.61 16 15 O -0.52 -11.22 15.52 5.55 0.09 -11.13 16 16 C -0.12 -2.47 6.16 36.01 0.22 -2.25 16 17 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 18 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 19 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 20 C 0.09 2.81 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.90 13.97 55.49 0.78 -26.13 16 22 Si 0.86 22.05 27.74 -169.99 -4.71 17.33 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 26 C 0.05 0.47 4.42 -3.83 -0.02 0.46 16 27 C 0.49 4.67 5.83 -10.86 -0.06 4.61 16 28 O -0.52 -7.17 16.09 5.56 0.09 -7.08 16 29 H 0.08 0.60 7.53 -51.93 -0.39 0.21 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.24 6.14 -51.93 -0.32 -0.08 16 34 H 0.11 0.33 7.32 -51.93 -0.38 -0.05 16 35 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.03 0.30 7.32 -51.93 -0.38 -0.08 16 37 H 0.09 0.44 4.71 -51.93 -0.24 0.20 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.40 4.55 8.60 -40.82 -0.35 4.20 16 43 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 44 H 0.10 1.82 8.14 -51.92 -0.42 1.39 16 45 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 46 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 47 H 0.05 0.60 6.67 -51.93 -0.35 0.25 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -36.56 380.65 -9.35 -45.91 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.45 Total: 0.94 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 0.04 Total: 0.44 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -1.14 Total: -46.51 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.18 Total: -18.21 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.56 -9.35 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567759999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.205 kcal (2) G-P(sol) polarization free energy of solvation -36.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds