Wall clock time and date at job start Sat Apr 11 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00210 * 2 1 4 4 O 1.21282 * 120.00016 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.00080 * 359.97438 * 3 2 1 6 6 S 1.80998 * 109.47034 * 180.02562 * 5 3 2 7 7 C 1.76202 * 99.99594 * 180.02562 * 6 5 3 8 8 H 1.08003 * 120.00270 * 359.97438 * 7 6 5 9 9 C 1.38797 * 120.00084 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00323 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99924 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47547 * 89.99786 * 11 9 7 13 13 H 1.48500 * 109.47271 * 210.00113 * 11 9 7 14 14 H 1.48509 * 109.47140 * 330.00073 * 11 9 7 15 15 C 1.46502 * 119.99670 * 179.97438 * 2 1 3 16 16 C 1.53777 * 113.61283 * 113.98616 * 15 2 1 17 17 C 1.53778 * 87.08336 * 270.87960 * 16 15 2 18 18 N 1.46895 * 113.61637 * 220.01861 * 17 16 15 19 19 C 1.46907 * 110.99777 * 204.99771 * 18 17 16 20 20 C 1.50703 * 109.46762 * 180.02562 * 19 18 17 21 21 O 1.21274 * 120.00148 * 0.02562 * 20 19 18 22 22 N 1.34778 * 119.99679 * 179.97438 * 20 19 18 23 23 C 1.46503 * 119.99615 * 179.97438 * 22 20 19 24 24 C 1.52997 * 117.49807 * 223.62112 * 23 22 20 25 25 C 1.52994 * 60.00269 * 252.51690 * 24 23 22 26 26 C 1.53782 * 113.61795 * 16.48568 * 15 2 1 27 27 H 1.08996 * 109.47142 * 264.66510 * 1 2 3 28 28 H 1.08996 * 109.46660 * 24.66356 * 1 2 3 29 29 H 1.08999 * 109.46970 * 144.66091 * 1 2 3 30 30 H 1.08997 * 109.46898 * 300.00798 * 5 3 2 31 31 H 1.09007 * 109.46783 * 60.00709 * 5 3 2 32 32 H 0.97003 * 120.00484 * 180.02562 * 10 9 7 33 33 H 1.08999 * 112.90516 * 245.23553 * 15 2 1 34 34 H 1.09010 * 113.61366 * 156.33288 * 16 15 2 35 35 H 1.08994 * 113.61821 * 25.43102 * 16 15 2 36 36 H 1.08999 * 113.61196 * 89.11455 * 17 16 15 37 37 H 1.00896 * 111.00610 * 328.95545 * 18 17 16 38 38 H 1.08998 * 109.47344 * 300.00228 * 19 18 17 39 39 H 1.08997 * 109.47021 * 60.00607 * 19 18 17 40 40 H 0.96997 * 120.00061 * 0.02562 * 22 20 19 41 41 H 1.08988 * 115.55242 * 9.33607 * 23 22 20 42 42 H 1.09008 * 117.50236 * 0.02562 * 24 23 22 43 43 H 1.09003 * 117.49973 * 145.01948 * 24 23 22 44 44 H 1.09001 * 117.49634 * 252.51133 * 25 24 23 45 45 H 1.08995 * 117.51947 * 107.48374 * 25 24 23 46 46 H 1.08999 * 113.61286 * 334.56889 * 26 15 2 47 47 H 1.08993 * 113.61692 * 203.66335 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5618 3.8480 -0.0012 7 6 1.4417 5.2081 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9284 6.5080 -0.0019 10 7 1.0917 7.5241 -0.0023 11 14 3.7709 6.8154 -0.0026 12 1 4.2589 6.8959 -1.4028 13 1 4.0599 8.0932 0.6966 14 1 4.4589 5.7012 0.6979 15 6 2.1975 -1.2688 0.0006 16 6 3.0015 -1.5165 -1.2867 17 6 1.7381 -2.1849 -1.8537 18 7 2.0149 -3.3929 -2.6424 19 6 0.9412 -3.6456 -3.6127 20 6 1.2592 -4.8901 -4.4010 21 8 2.2795 -5.5060 -4.1762 22 7 0.4093 -5.3190 -5.3549 23 6 0.7188 -6.5285 -6.1216 24 6 0.4845 -6.4862 -7.6329 25 6 -0.4544 -7.2950 -6.7357 26 6 1.3354 -2.4780 -0.3987 27 1 -0.3633 -0.0955 1.0232 28 1 -0.3632 0.9339 -0.4288 29 1 -0.3633 -0.8383 -0.5944 30 1 0.7591 2.5298 -0.8907 31 1 0.7586 2.5303 0.8893 32 1 1.4318 8.4325 -0.0033 33 1 2.7738 -1.4255 0.9123 34 1 3.8371 -2.2038 -1.1541 35 1 3.2832 -0.6019 -1.8084 36 1 1.0675 -1.4914 -2.3611 37 1 2.9102 -3.3269 -3.1029 38 1 -0.0019 -3.7821 -3.0837 39 1 0.8576 -2.7968 -4.2913 40 1 -0.4069 -4.8266 -5.5344 41 1 1.5659 -7.1107 -5.7594 42 1 0.1005 -5.5583 -8.0570 43 1 1.1778 -7.0405 -8.2654 44 1 -0.3787 -8.3816 -6.7779 45 1 -1.4564 -6.8997 -6.5690 46 1 0.2720 -2.3396 -0.2036 47 1 1.7154 -3.4281 -0.0235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571654087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:36 Heat of formation + Delta-G solvation = -6.501486 kcal Electronic energy + Delta-G solvation = -26433.588092 eV Core-core repulsion = 22551.837773 eV Total energy + Delta-G solvation = -3881.750319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63219 -40.11705 -38.23281 -37.51991 -35.16945 -33.61115 -33.12174 -32.45390 -29.34559 -27.62174 -27.18054 -25.63245 -25.30338 -23.42406 -22.95305 -22.27355 -21.07295 -20.60014 -18.57430 -17.78867 -17.52639 -17.09050 -16.90024 -16.21580 -16.18333 -15.91524 -15.28273 -15.12841 -14.99127 -14.75961 -14.50162 -13.95308 -13.83798 -13.35536 -13.25710 -13.17983 -12.84416 -12.79583 -12.77655 -12.22955 -12.15905 -12.03811 -11.85203 -11.80355 -11.72146 -11.26447 -11.08552 -11.03194 -10.99525 -10.60946 -10.51575 -10.20106 -9.86499 -9.43736 -9.27505 -9.01821 -8.81751 -8.57181 -8.50049 -6.93450 -6.30499 -4.02277 2.15989 2.48743 2.68248 2.93844 3.17023 3.32023 3.36504 3.49817 3.57781 3.85623 4.18906 4.21672 4.27214 4.32021 4.38511 4.42930 4.45735 4.51136 4.73512 4.77307 4.88768 4.91688 5.01822 5.06311 5.08655 5.19539 5.23722 5.29121 5.35762 5.39158 5.50311 5.59422 5.62650 5.70829 5.77090 5.79990 5.93179 5.97151 5.98508 6.01365 6.52151 6.72419 6.93088 7.04225 7.43916 7.78637 7.92412 8.39482 8.44754 9.15823 10.78638 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.001786 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.475691 B =15675.517268 C =16138.449512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.609 5.609 3 C 0.532 3.468 4 O -0.513 6.513 5 C -0.121 4.121 6 S -0.143 6.143 7 C -0.521 4.521 8 H 0.088 0.912 9 C 0.096 3.904 10 N -0.880 5.880 11 Si 0.856 3.144 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.128 3.872 16 C -0.144 4.144 17 C 0.059 3.941 18 N -0.660 5.660 19 C 0.040 3.960 20 C 0.517 3.483 21 O -0.521 6.521 22 N -0.707 5.707 23 C 0.080 3.920 24 C -0.194 4.194 25 C -0.189 4.189 26 C -0.130 4.130 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.271 0.729 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.353 0.647 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.402 0.598 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 -28.512 -10.397 31.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.346 5.346 3 C 0.320 3.680 4 O -0.387 6.387 5 C -0.271 4.271 6 S 0.083 5.917 7 C -0.669 4.669 8 H 0.106 0.894 9 C -0.113 4.113 10 N -0.517 5.517 11 Si 0.681 3.319 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.159 1.159 15 C 0.024 3.976 16 C -0.183 4.183 17 C -0.051 4.051 18 N -0.293 5.293 19 C -0.092 4.092 20 C 0.303 3.697 21 O -0.396 6.396 22 N -0.359 5.359 23 C -0.026 4.026 24 C -0.233 4.233 25 C -0.228 4.228 26 C -0.169 4.169 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.174 0.826 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.236 0.764 41 H 0.156 0.844 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.094 0.906 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.570 -29.171 -9.734 31.090 hybrid contribution -1.300 1.368 -0.907 2.093 sum -5.869 -27.804 -10.641 30.343 Atomic orbital electron populations 1.21888 0.79736 1.03386 1.02085 1.47612 1.06596 1.04834 1.75548 1.20271 0.87955 0.84343 0.75480 1.90699 1.13624 1.86806 1.47574 1.23325 1.03075 0.95212 1.05505 1.84805 1.11942 0.97504 1.97407 1.22308 0.94856 0.90917 1.58812 0.89426 1.24706 0.98528 0.94867 0.93157 1.69935 1.34800 0.98879 1.48062 0.86740 0.85369 0.79852 0.79927 1.19236 1.19924 1.15902 1.21615 0.94268 0.83314 0.98403 1.23498 0.96658 1.01140 0.97000 1.23143 0.98613 0.89658 0.93642 1.60343 1.04683 1.37793 1.26496 1.21869 0.98000 0.94638 0.94733 1.20682 0.83325 0.86404 0.79280 1.90721 1.25706 1.57041 1.66096 1.45396 1.25123 1.27614 1.37738 1.21595 1.00619 0.89372 0.91021 1.23437 1.03478 1.02616 0.93761 1.23380 0.95699 0.99642 1.04058 1.23457 1.00232 0.97906 0.95286 0.92417 0.90334 0.91051 0.88681 0.88522 0.91941 0.89593 0.88447 0.90292 0.90647 0.82613 0.87899 0.92037 0.76400 0.84443 0.88449 0.87927 0.87814 0.88411 0.90579 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 9.74 59.85 0.58 1.26 16 2 N -0.61 -7.93 3.01 -173.00 -0.52 -8.45 16 3 C 0.53 9.45 7.41 -10.99 -0.08 9.37 16 4 O -0.51 -10.95 15.05 5.56 0.08 -10.87 16 5 C -0.12 -2.32 4.63 36.01 0.17 -2.15 16 6 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 7 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 8 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 9 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 10 N -0.88 -26.38 13.97 55.49 0.78 -25.61 16 11 Si 0.86 21.73 27.74 -169.99 -4.71 17.02 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 15 C 0.13 1.48 4.09 -67.12 -0.27 1.20 16 16 C -0.14 -1.63 7.00 -25.92 -0.18 -1.81 16 17 C 0.06 0.53 3.92 -66.90 -0.26 0.26 16 18 N -0.66 -5.85 6.18 -107.13 -0.66 -6.51 16 19 C 0.04 0.27 6.01 -4.97 -0.03 0.24 16 20 C 0.52 4.41 7.87 -10.98 -0.09 4.32 16 21 O -0.52 -6.64 15.77 5.56 0.09 -6.56 16 22 N -0.71 -4.13 5.57 -53.81 -0.30 -4.43 16 23 C 0.08 0.49 6.43 -67.93 -0.44 0.05 16 24 C -0.19 -0.87 10.46 -26.74 -0.28 -1.15 16 25 C -0.19 -0.77 10.45 -26.73 -0.28 -1.05 16 26 C -0.13 -1.11 7.00 -25.92 -0.18 -1.29 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.76 6.25 -51.93 -0.32 0.44 16 29 H 0.07 0.50 5.63 -51.93 -0.29 0.21 16 30 H 0.09 1.68 7.42 -51.92 -0.39 1.30 16 31 H 0.10 1.74 8.11 -51.91 -0.42 1.32 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.08 1.10 7.41 -51.93 -0.39 0.72 16 36 H 0.08 0.67 7.76 -51.93 -0.40 0.27 16 37 H 0.35 3.42 8.25 -39.29 -0.32 3.10 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.34 8.13 -51.93 -0.42 -0.09 16 40 H 0.40 1.24 8.83 -40.82 -0.36 0.88 16 41 H 0.14 1.06 7.40 -51.94 -0.38 0.68 16 42 H 0.10 0.40 8.14 -51.92 -0.42 -0.03 16 43 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.55 5.81 -51.93 -0.30 0.25 16 47 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -35.93 397.95 -9.76 -45.69 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.39 Total: 1.96 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.13 Total: -2.64 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.71 Total: -45.00 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.17 Total: -17.42 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.93 -9.76 -45.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571654087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.191 kcal (2) G-P(sol) polarization free energy of solvation -35.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds