Wall clock time and date at job start Sat Apr 11 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00210 * 2 1 4 4 O 1.21282 * 120.00016 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.00080 * 359.97438 * 3 2 1 6 6 S 1.80998 * 109.47034 * 180.02562 * 5 3 2 7 7 C 1.76202 * 99.99594 * 180.02562 * 6 5 3 8 8 H 1.08003 * 120.00270 * 359.97438 * 7 6 5 9 9 C 1.38797 * 120.00084 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00323 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99924 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47547 * 89.99786 * 11 9 7 13 13 H 1.48500 * 109.47271 * 210.00113 * 11 9 7 14 14 H 1.48509 * 109.47140 * 330.00073 * 11 9 7 15 15 C 1.46502 * 119.99670 * 179.97438 * 2 1 3 16 16 C 1.53777 * 113.61283 * 113.98616 * 15 2 1 17 17 C 1.53778 * 87.08336 * 270.87960 * 16 15 2 18 18 N 1.46895 * 113.61637 * 220.01861 * 17 16 15 19 19 C 1.46907 * 110.99777 * 204.99771 * 18 17 16 20 20 C 1.50703 * 109.46762 * 180.02562 * 19 18 17 21 21 O 1.21274 * 120.00148 * 0.02562 * 20 19 18 22 22 N 1.34778 * 119.99679 * 179.97438 * 20 19 18 23 23 C 1.46503 * 119.99615 * 179.97438 * 22 20 19 24 24 C 1.52997 * 117.49807 * 223.62112 * 23 22 20 25 25 C 1.52994 * 60.00269 * 252.51690 * 24 23 22 26 26 C 1.53782 * 113.61795 * 16.48568 * 15 2 1 27 27 H 1.08996 * 109.47142 * 264.66510 * 1 2 3 28 28 H 1.08996 * 109.46660 * 24.66356 * 1 2 3 29 29 H 1.08999 * 109.46970 * 144.66091 * 1 2 3 30 30 H 1.08997 * 109.46898 * 300.00798 * 5 3 2 31 31 H 1.09007 * 109.46783 * 60.00709 * 5 3 2 32 32 H 0.97003 * 120.00484 * 180.02562 * 10 9 7 33 33 H 1.08999 * 112.90516 * 245.23553 * 15 2 1 34 34 H 1.09010 * 113.61366 * 156.33288 * 16 15 2 35 35 H 1.08994 * 113.61821 * 25.43102 * 16 15 2 36 36 H 1.08999 * 113.61196 * 89.11455 * 17 16 15 37 37 H 1.00896 * 111.00610 * 328.95545 * 18 17 16 38 38 H 1.08998 * 109.47344 * 300.00228 * 19 18 17 39 39 H 1.08997 * 109.47021 * 60.00607 * 19 18 17 40 40 H 0.96997 * 120.00061 * 0.02562 * 22 20 19 41 41 H 1.08988 * 115.55242 * 9.33607 * 23 22 20 42 42 H 1.09008 * 117.50236 * 0.02562 * 24 23 22 43 43 H 1.09003 * 117.49973 * 145.01948 * 24 23 22 44 44 H 1.09001 * 117.49634 * 252.51133 * 25 24 23 45 45 H 1.08995 * 117.51947 * 107.48374 * 25 24 23 46 46 H 1.08999 * 113.61286 * 334.56889 * 26 15 2 47 47 H 1.08993 * 113.61692 * 203.66335 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5618 3.8480 -0.0012 7 6 1.4417 5.2081 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9284 6.5080 -0.0019 10 7 1.0917 7.5241 -0.0023 11 14 3.7709 6.8154 -0.0026 12 1 4.2589 6.8959 -1.4028 13 1 4.0599 8.0932 0.6966 14 1 4.4589 5.7012 0.6979 15 6 2.1975 -1.2688 0.0006 16 6 3.0015 -1.5165 -1.2867 17 6 1.7381 -2.1849 -1.8537 18 7 2.0149 -3.3929 -2.6424 19 6 0.9412 -3.6456 -3.6127 20 6 1.2592 -4.8901 -4.4010 21 8 2.2795 -5.5060 -4.1762 22 7 0.4093 -5.3190 -5.3549 23 6 0.7188 -6.5285 -6.1216 24 6 0.4845 -6.4862 -7.6329 25 6 -0.4544 -7.2950 -6.7357 26 6 1.3354 -2.4780 -0.3987 27 1 -0.3633 -0.0955 1.0232 28 1 -0.3632 0.9339 -0.4288 29 1 -0.3633 -0.8383 -0.5944 30 1 0.7591 2.5298 -0.8907 31 1 0.7586 2.5303 0.8893 32 1 1.4318 8.4325 -0.0033 33 1 2.7738 -1.4255 0.9123 34 1 3.8371 -2.2038 -1.1541 35 1 3.2832 -0.6019 -1.8084 36 1 1.0675 -1.4914 -2.3611 37 1 2.9102 -3.3269 -3.1029 38 1 -0.0019 -3.7821 -3.0837 39 1 0.8576 -2.7968 -4.2913 40 1 -0.4069 -4.8266 -5.5344 41 1 1.5659 -7.1107 -5.7594 42 1 0.1005 -5.5583 -8.0570 43 1 1.1778 -7.0405 -8.2654 44 1 -0.3787 -8.3816 -6.7779 45 1 -1.4564 -6.8997 -6.5690 46 1 0.2720 -2.3396 -0.2036 47 1 1.7154 -3.4281 -0.0235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571654087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:36 Heat of formation + Delta-G solvation = -33.470511 kcal Electronic energy + Delta-G solvation = -26434.757556 eV Core-core repulsion = 22551.837773 eV Total energy + Delta-G solvation = -3882.919783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60782 -40.79963 -39.32601 -38.05481 -36.14618 -34.67647 -34.43133 -33.72257 -30.76643 -28.44584 -27.96841 -27.79087 -26.12048 -24.30366 -23.27834 -22.77003 -21.72873 -21.57781 -19.95988 -19.30657 -18.43405 -17.86403 -17.64217 -17.36966 -17.14284 -16.93942 -16.79357 -16.17767 -15.94665 -15.74069 -15.30186 -15.28161 -14.91643 -14.64910 -14.44794 -14.19539 -13.75598 -13.66838 -13.51624 -13.39820 -13.34771 -13.03737 -12.81509 -12.77144 -12.69717 -12.49206 -12.40999 -12.33262 -11.87498 -11.84941 -11.48343 -11.34092 -11.17637 -10.90170 -10.82430 -10.51761 -9.76617 -9.65732 -9.44868 -9.00416 -8.51966 -6.22660 0.97634 1.30270 1.45656 1.53522 1.55269 1.55826 1.99323 2.06371 2.24438 2.68847 2.86381 2.98099 3.20541 3.38955 3.59021 3.63601 3.76178 3.83561 3.89589 4.04357 4.06579 4.07722 4.16622 4.27064 4.37513 4.43101 4.43845 4.54039 4.60966 4.76095 4.81448 4.83242 4.88027 4.93885 5.00363 5.02343 5.09625 5.19478 5.19819 5.50717 5.63671 5.70481 5.99657 6.10891 6.22676 6.26179 6.54357 6.93566 7.12483 7.24393 8.60211 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.001786 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.475691 B =15675.517268 C =16138.449512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.594 5.594 3 C 0.531 3.469 4 O -0.559 6.559 5 C -0.105 4.105 6 S -0.180 6.180 7 C -0.527 4.527 8 H 0.064 0.936 9 C 0.048 3.952 10 N -0.915 5.915 11 Si 0.912 3.088 12 H -0.263 1.263 13 H -0.259 1.259 14 H -0.239 1.239 15 C 0.116 3.884 16 C -0.149 4.149 17 C 0.073 3.927 18 N -0.670 5.670 19 C 0.043 3.957 20 C 0.513 3.487 21 O -0.573 6.573 22 N -0.692 5.692 23 C 0.053 3.947 24 C -0.188 4.188 25 C -0.172 4.172 26 C -0.109 4.109 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.277 0.723 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.346 0.654 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.417 0.583 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 -30.191 -11.005 33.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.328 5.328 3 C 0.318 3.682 4 O -0.437 6.437 5 C -0.255 4.255 6 S 0.046 5.954 7 C -0.675 4.675 8 H 0.082 0.918 9 C -0.158 4.158 10 N -0.553 5.553 11 Si 0.734 3.266 12 H -0.188 1.188 13 H -0.183 1.183 14 H -0.163 1.163 15 C 0.012 3.988 16 C -0.188 4.188 17 C -0.036 4.036 18 N -0.302 5.302 19 C -0.088 4.088 20 C 0.300 3.700 21 O -0.452 6.452 22 N -0.344 5.344 23 C -0.053 4.053 24 C -0.227 4.227 25 C -0.210 4.210 26 C -0.147 4.147 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.165 0.835 38 H 0.145 0.855 39 H 0.098 0.902 40 H 0.254 0.746 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.119 0.881 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.554 -30.875 -10.364 33.221 hybrid contribution -0.832 1.726 -0.762 2.062 sum -7.385 -29.149 -11.126 32.062 Atomic orbital electron populations 1.22234 0.77030 1.04873 1.03893 1.47562 1.08206 1.03836 1.73160 1.20013 0.87301 0.85118 0.75737 1.90683 1.15357 1.87437 1.50217 1.23294 1.01682 0.93513 1.07037 1.84767 1.13953 0.99071 1.97564 1.22443 0.94399 0.92424 1.58216 0.91797 1.25516 1.02534 0.94802 0.92929 1.70007 1.36674 0.99505 1.49136 0.85900 0.80461 0.80042 0.80172 1.18751 1.18311 1.16281 1.21797 0.95341 0.83630 0.98014 1.23483 0.98013 1.00134 0.97154 1.23023 0.96899 0.89568 0.94134 1.60353 1.05043 1.37461 1.27382 1.21957 0.97982 0.94170 0.94738 1.21059 0.82811 0.86590 0.79491 1.90702 1.27910 1.58720 1.67827 1.45272 1.25119 1.27344 1.36679 1.21584 1.01489 0.90042 0.92229 1.23489 1.03519 1.03125 0.92564 1.23452 0.95544 0.99925 1.02108 1.23365 1.00991 0.96199 0.94165 0.90779 0.90435 0.87716 0.86943 0.87124 0.91376 0.90695 0.88472 0.93388 0.89833 0.83461 0.85517 0.90222 0.74559 0.86856 0.87653 0.87737 0.87215 0.86985 0.88117 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 9.74 127.77 1.24 2.17 16 2 N -0.59 -14.25 3.01 -819.64 -2.47 -16.71 16 3 C 0.53 18.47 7.41 87.66 0.65 19.12 16 4 O -0.56 -24.15 15.05 -3.04 -0.05 -24.20 16 5 C -0.10 -3.92 4.63 71.24 0.33 -3.59 16 6 S -0.18 -9.12 18.55 -56.49 -1.05 -10.17 16 7 C -0.53 -30.49 10.04 67.95 0.68 -29.81 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 C 0.05 2.79 5.50 84.86 0.47 3.26 16 10 N -0.92 -55.31 13.97 21.65 0.30 -55.01 16 11 Si 0.91 45.06 27.74 68.60 1.90 46.96 16 12 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 15 C 0.12 2.49 4.09 45.52 0.19 2.68 16 16 C -0.15 -3.30 7.00 31.12 0.22 -3.08 16 17 C 0.07 1.13 3.92 45.44 0.18 1.31 16 18 N -0.67 -10.70 6.18 -492.84 -3.05 -13.75 16 19 C 0.04 0.47 6.01 85.56 0.51 0.98 16 20 C 0.51 8.18 7.87 87.66 0.69 8.87 16 21 O -0.57 -14.81 15.77 -3.01 -0.05 -14.86 16 22 N -0.69 -6.97 5.57 -442.54 -2.46 -9.44 16 23 C 0.05 0.60 6.43 44.99 0.29 0.89 16 24 C -0.19 -1.40 10.46 30.59 0.32 -1.08 16 25 C -0.17 -1.04 10.45 30.59 0.32 -0.72 16 26 C -0.11 -1.49 7.00 31.12 0.22 -1.28 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.24 6.25 -2.39 -0.01 1.22 16 29 H 0.10 0.93 5.63 -2.39 -0.01 0.91 16 30 H 0.11 3.82 7.42 -2.40 -0.02 3.80 16 31 H 0.11 3.84 8.11 -2.39 -0.02 3.82 16 32 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.05 1.37 7.41 -2.39 -0.02 1.35 16 36 H 0.08 1.19 7.76 -2.39 -0.02 1.17 16 37 H 0.35 6.55 8.25 -89.70 -0.74 5.81 16 38 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.61 8.13 -2.39 -0.02 0.59 16 40 H 0.42 1.45 8.83 -92.71 -0.82 0.63 16 41 H 0.11 1.86 7.40 -2.39 -0.02 1.84 16 42 H 0.11 0.62 8.14 -2.38 -0.02 0.61 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.10 0.93 5.81 -2.39 -0.01 0.92 16 47 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -80.83 397.95 -1.20 -82.03 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.60 Total: 15.43 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 6.31 Total: -0.29 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -7.68 Total: -94.91 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.09 Total: -39.06 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.05 Total: -10.17 kcal Total: -80.83 -1.20 -82.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571654087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.559 kcal (2) G-P(sol) polarization free energy of solvation -80.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds