Wall clock time and date at job start Sat Apr 11 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47903 * 111.00115 * 2 1 4 4 C 1.53995 * 107.05860 * 145.84892 * 3 2 1 5 5 C 1.54599 * 105.13571 * 358.77132 * 4 3 2 6 6 H 1.09000 * 110.72068 * 96.58470 * 5 4 3 7 7 C 1.50704 * 110.72212 * 219.68457 * 5 4 3 8 8 O 1.21283 * 119.99961 * 0.02562 * 7 5 4 9 9 N 1.34772 * 119.99925 * 180.02562 * 7 5 4 10 10 C 1.46500 * 120.00096 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.46909 * 184.96401 * 10 9 7 12 12 H 1.08996 * 112.78093 * 45.04125 * 11 10 9 13 13 C 1.53234 * 113.38252 * 274.33018 * 11 10 9 14 14 C 1.53497 * 83.43241 * 219.29474 * 13 11 10 15 15 N 1.47063 * 87.98396 * 25.90200 * 14 13 11 16 16 C 1.34778 * 136.06214 * 152.84317 * 15 14 13 17 17 O 1.21274 * 120.00285 * 174.95948 * 16 15 14 18 18 C 1.50700 * 119.99454 * 354.96557 * 16 15 14 19 19 S 1.81000 * 109.47149 * 180.02562 * 18 16 15 20 20 C 1.76191 * 100.00365 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99933 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00486 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99860 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00301 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47035 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47232 * 299.99904 * 24 22 20 27 27 H 1.48500 * 109.47294 * 60.00477 * 24 22 20 28 28 C 1.48526 * 111.00115 * 117.40021 * 2 1 3 29 29 H 1.09004 * 109.47146 * 60.12045 * 1 2 3 30 30 H 1.08996 * 109.47099 * 180.12481 * 1 2 3 31 31 H 1.09002 * 109.46741 * 300.12668 * 1 2 3 32 32 H 1.08999 * 109.91542 * 26.49132 * 3 2 1 33 33 H 1.09003 * 110.08165 * 265.28792 * 3 2 1 34 34 H 1.08998 * 110.30496 * 239.86341 * 4 3 2 35 35 H 1.08992 * 110.39811 * 117.73150 * 4 3 2 36 36 H 0.97000 * 120.00095 * 0.02562 * 9 7 5 37 37 H 1.09001 * 109.47196 * 64.96305 * 10 9 7 38 38 H 1.09000 * 109.47159 * 304.96202 * 10 9 7 39 39 H 1.09001 * 114.32311 * 105.66179 * 13 11 10 40 40 H 1.08999 * 114.02375 * 332.91129 * 13 11 10 41 41 H 1.08992 * 113.46605 * 271.12213 * 14 13 11 42 42 H 1.08996 * 113.46439 * 140.67878 * 14 13 11 43 43 H 1.08996 * 109.47472 * 59.99544 * 18 16 15 44 44 H 1.09003 * 109.47126 * 299.99785 * 18 16 15 45 45 H 0.97003 * 119.99786 * 359.97438 * 23 22 20 46 46 H 1.08992 * 110.67074 * 81.84275 * 28 2 1 47 47 H 1.08998 * 110.66415 * 318.70739 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2984 1.3659 0.8265 5 6 3.4491 -0.0930 1.3153 6 1 4.1140 -0.6533 0.6579 7 6 3.9513 -0.1303 2.7357 8 8 4.1758 0.9047 3.3269 9 7 4.1509 -1.3136 3.3491 10 6 4.6385 -1.3499 4.7301 11 6 4.8955 -2.8008 5.1422 12 1 5.4270 -3.3686 4.3787 13 6 3.6466 -3.5124 5.6733 14 6 4.6357 -4.1209 6.6772 15 7 5.4813 -2.9332 6.4847 16 6 6.3893 -2.2592 7.2180 17 8 7.0006 -1.3346 6.7259 18 6 6.6450 -2.6546 8.6496 19 16 7.9071 -1.5686 9.3593 20 6 8.0045 -2.2355 10.9872 21 1 7.3815 -3.0725 11.2660 22 6 8.8826 -1.6860 11.9110 23 7 9.6423 -0.6662 11.5711 24 14 8.9864 -2.3935 13.6367 25 1 9.9913 -1.6343 14.4234 26 1 7.6598 -2.2876 14.2957 27 1 9.3901 -3.8207 13.5631 28 6 2.0013 -0.6381 1.2310 29 1 -0.3634 0.5120 -0.8911 30 1 -0.3633 -1.0276 0.0022 31 1 -0.3633 0.5158 0.8889 32 1 1.2758 2.0561 0.4571 33 1 2.2117 1.7001 -1.0203 34 1 3.2137 2.0428 1.6766 35 1 4.1479 1.6459 0.2037 36 1 3.9717 -2.1413 2.8761 37 1 3.8908 -0.9113 5.3910 38 1 5.5658 -0.7817 4.8030 39 1 3.2122 -4.2335 4.9809 40 1 2.9110 -2.8436 6.1200 41 1 5.0973 -5.0438 6.3265 42 1 4.2320 -4.2075 7.6859 43 1 6.9921 -3.6872 8.6848 44 1 5.7224 -2.5617 9.2225 45 1 9.5887 -0.2990 10.6748 46 1 2.0041 -1.7235 1.1314 47 1 1.4238 -0.3322 2.1034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584667074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:41 Heat of formation + Delta-G solvation = -30.519991 kcal Electronic energy + Delta-G solvation = -26777.634638 eV Core-core repulsion = 22894.842799 eV Total energy + Delta-G solvation = -3882.791839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85223 -40.25715 -38.44435 -37.65122 -34.93683 -32.75120 -32.54068 -30.95657 -29.89608 -28.47187 -28.17188 -26.27032 -24.85257 -23.77247 -22.48179 -22.12971 -21.45992 -20.37963 -19.01137 -18.26833 -17.78565 -16.88181 -16.79591 -16.23859 -15.81031 -15.57544 -15.43952 -14.92536 -14.59768 -14.44984 -14.25579 -14.16834 -13.84156 -13.67978 -13.59095 -13.24622 -12.94914 -12.87433 -12.42484 -12.28630 -12.10902 -12.06936 -11.95920 -11.89619 -11.83500 -11.72569 -11.64860 -11.09583 -10.92913 -10.89857 -10.18230 -10.12008 -9.61254 -9.55992 -9.27487 -9.02993 -8.98359 -8.78395 -8.24162 -6.69298 -6.63311 -4.01698 2.35390 2.40113 2.84085 2.98272 3.29959 3.36966 3.39693 3.56101 3.57414 3.96702 4.03808 4.15122 4.22554 4.41216 4.49007 4.58148 4.70545 4.72813 4.82768 4.83143 4.85930 4.95395 5.01841 5.06310 5.15027 5.21256 5.22478 5.32208 5.32918 5.38123 5.39634 5.44520 5.54850 5.68050 5.68925 5.71159 5.75237 5.83732 5.95650 5.98414 6.17608 6.30264 6.44468 7.17363 7.69312 7.89923 7.95454 8.38519 8.48678 9.25802 10.80494 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024978 B = 0.001859 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.729709 B =15057.910324 C =15779.353566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.521 5.521 3 C 0.034 3.966 4 C -0.120 4.120 5 C -0.113 4.113 6 H 0.111 0.889 7 C 0.519 3.481 8 O -0.529 6.529 9 N -0.725 5.725 10 C 0.111 3.889 11 C 0.124 3.876 12 H 0.096 0.904 13 C -0.152 4.152 14 C 0.101 3.899 15 N -0.647 5.647 16 C 0.560 3.440 17 O -0.509 6.509 18 C -0.122 4.122 19 S -0.115 6.115 20 C -0.608 4.608 21 H 0.066 0.934 22 C 0.035 3.965 23 N -0.883 5.883 24 Si 1.085 2.915 25 H -0.277 1.277 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.047 3.953 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.400 0.600 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.278 0.722 46 H 0.090 0.910 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.590 -7.028 -23.633 32.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.094 4.094 4 C -0.158 4.158 5 C -0.135 4.135 6 H 0.129 0.871 7 C 0.304 3.696 8 O -0.405 6.405 9 N -0.377 5.377 10 C -0.013 4.013 11 C 0.020 3.980 12 H 0.113 0.887 13 C -0.190 4.190 14 C -0.022 4.022 15 N -0.387 5.387 16 C 0.349 3.651 17 O -0.382 6.382 18 C -0.273 4.273 19 S 0.112 5.888 20 C -0.756 4.756 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.517 5.517 24 Si 0.910 3.090 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.082 4.082 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.394 -4.845 -22.782 29.679 hybrid contribution -1.873 -1.520 -0.280 2.428 sum -20.267 -6.364 -23.062 31.355 Atomic orbital electron populations 1.22540 0.87457 1.02381 1.01062 1.64751 1.08461 1.15354 1.35908 1.22931 0.95895 0.89628 1.00910 1.22379 0.97738 0.95156 1.00547 1.22231 0.97934 0.99627 0.93694 0.87131 1.20410 0.77536 0.83469 0.88170 1.90754 1.50403 1.32794 1.66509 1.45826 1.68363 1.08528 1.14976 1.21598 1.01532 0.96365 0.81822 1.22710 0.92281 0.95573 0.87477 0.88662 1.23555 0.95974 1.00344 0.99135 1.22901 0.88958 0.89421 1.00949 1.49711 1.42968 1.30088 1.15910 1.19980 0.76376 0.81550 0.87146 1.90731 1.46179 1.29020 1.72279 1.23246 1.05128 1.05141 0.93740 1.84864 1.47684 1.43527 1.12750 1.23687 1.31551 1.23130 0.97249 0.91615 1.26068 0.91903 0.94871 1.04687 1.70801 1.36651 1.21534 1.22686 0.83325 0.76618 0.75555 0.73462 1.20238 1.21132 1.21130 1.23180 0.92852 1.00135 0.91993 0.91052 0.91059 0.95172 0.93385 0.89909 0.89232 0.90275 0.76657 0.90958 0.89211 0.89070 0.88441 0.89590 0.89948 0.89080 0.88981 0.90973 0.89196 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.40 60.06 0.56 0.64 16 2 N -0.52 -3.57 5.55 -238.73 -1.33 -4.90 16 3 C 0.03 0.24 6.70 -2.75 -0.02 0.22 16 4 C -0.12 -0.99 6.33 -25.37 -0.16 -1.15 16 5 C -0.11 -0.86 3.45 -89.91 -0.31 -1.17 16 6 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 7 C 0.52 5.66 7.13 -10.99 -0.08 5.58 16 8 O -0.53 -8.46 15.43 5.55 0.09 -8.38 16 9 N -0.72 -6.34 5.55 -60.29 -0.33 -6.67 16 10 C 0.11 1.33 5.47 -4.04 -0.02 1.31 16 11 C 0.12 1.21 4.06 -72.52 -0.29 0.91 16 12 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.15 -0.98 8.00 -26.35 -0.21 -1.19 16 14 C 0.10 0.86 8.42 -8.51 -0.07 0.79 16 15 N -0.65 -8.77 3.57 -177.61 -0.63 -9.40 16 16 C 0.56 10.78 7.97 -10.98 -0.09 10.69 16 17 O -0.51 -11.86 15.47 5.56 0.09 -11.78 16 18 C -0.12 -2.52 5.99 36.01 0.22 -2.31 16 19 S -0.11 -3.14 19.60 -107.50 -2.11 -5.25 16 20 C -0.61 -17.69 9.50 30.94 0.29 -17.40 16 21 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 22 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 23 N -0.88 -27.75 13.67 55.49 0.76 -27.00 16 24 Si 1.08 25.06 29.92 -169.99 -5.09 19.97 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.05 0.29 5.99 -1.90 -0.01 0.28 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.03 0.17 8.00 -51.93 -0.42 -0.25 16 32 H 0.05 0.33 7.73 -51.93 -0.40 -0.07 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.94 6.85 -51.93 -0.36 0.58 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.40 1.98 8.48 -40.82 -0.35 1.64 16 37 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 38 H 0.09 1.50 7.15 -51.93 -0.37 1.13 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.10 0.67 7.93 -51.93 -0.41 0.26 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.09 1.79 8.14 -51.91 -0.42 1.37 16 45 H 0.28 8.95 7.13 -40.82 -0.29 8.66 16 46 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -38.78 398.50 -10.53 -49.31 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.69 Total: -0.08 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.29 Total: -1.84 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -1.54 Total: -47.96 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.17 Total: -20.15 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.09 Total: 19.97 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.11 Total: -5.25 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.78 -10.53 -49.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584667074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.787 kcal (2) G-P(sol) polarization free energy of solvation -38.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds