Wall clock time and date at job start Sat Apr 11 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47903 * 111.00115 * 2 1 4 4 C 1.53995 * 107.05860 * 145.84892 * 3 2 1 5 5 C 1.54599 * 105.13571 * 358.77132 * 4 3 2 6 6 H 1.09000 * 110.72068 * 96.58470 * 5 4 3 7 7 C 1.50704 * 110.72212 * 219.68457 * 5 4 3 8 8 O 1.21283 * 119.99961 * 0.02562 * 7 5 4 9 9 N 1.34772 * 119.99925 * 180.02562 * 7 5 4 10 10 C 1.46500 * 120.00096 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.46909 * 184.96401 * 10 9 7 12 12 H 1.08996 * 112.78093 * 45.04125 * 11 10 9 13 13 C 1.53234 * 113.38252 * 274.33018 * 11 10 9 14 14 C 1.53497 * 83.43241 * 219.29474 * 13 11 10 15 15 N 1.47063 * 87.98396 * 25.90200 * 14 13 11 16 16 C 1.34778 * 136.06214 * 152.84317 * 15 14 13 17 17 O 1.21274 * 120.00285 * 174.95948 * 16 15 14 18 18 C 1.50700 * 119.99454 * 354.96557 * 16 15 14 19 19 S 1.81000 * 109.47149 * 180.02562 * 18 16 15 20 20 C 1.76191 * 100.00365 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99933 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00486 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99860 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00301 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47035 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47232 * 299.99904 * 24 22 20 27 27 H 1.48500 * 109.47294 * 60.00477 * 24 22 20 28 28 C 1.48526 * 111.00115 * 117.40021 * 2 1 3 29 29 H 1.09004 * 109.47146 * 60.12045 * 1 2 3 30 30 H 1.08996 * 109.47099 * 180.12481 * 1 2 3 31 31 H 1.09002 * 109.46741 * 300.12668 * 1 2 3 32 32 H 1.08999 * 109.91542 * 26.49132 * 3 2 1 33 33 H 1.09003 * 110.08165 * 265.28792 * 3 2 1 34 34 H 1.08998 * 110.30496 * 239.86341 * 4 3 2 35 35 H 1.08992 * 110.39811 * 117.73150 * 4 3 2 36 36 H 0.97000 * 120.00095 * 0.02562 * 9 7 5 37 37 H 1.09001 * 109.47196 * 64.96305 * 10 9 7 38 38 H 1.09000 * 109.47159 * 304.96202 * 10 9 7 39 39 H 1.09001 * 114.32311 * 105.66179 * 13 11 10 40 40 H 1.08999 * 114.02375 * 332.91129 * 13 11 10 41 41 H 1.08992 * 113.46605 * 271.12213 * 14 13 11 42 42 H 1.08996 * 113.46439 * 140.67878 * 14 13 11 43 43 H 1.08996 * 109.47472 * 59.99544 * 18 16 15 44 44 H 1.09003 * 109.47126 * 299.99785 * 18 16 15 45 45 H 0.97003 * 119.99786 * 359.97438 * 23 22 20 46 46 H 1.08992 * 110.67074 * 81.84275 * 28 2 1 47 47 H 1.08998 * 110.66415 * 318.70739 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2984 1.3659 0.8265 5 6 3.4491 -0.0930 1.3153 6 1 4.1140 -0.6533 0.6579 7 6 3.9513 -0.1303 2.7357 8 8 4.1758 0.9047 3.3269 9 7 4.1509 -1.3136 3.3491 10 6 4.6385 -1.3499 4.7301 11 6 4.8955 -2.8008 5.1422 12 1 5.4270 -3.3686 4.3787 13 6 3.6466 -3.5124 5.6733 14 6 4.6357 -4.1209 6.6772 15 7 5.4813 -2.9332 6.4847 16 6 6.3893 -2.2592 7.2180 17 8 7.0006 -1.3346 6.7259 18 6 6.6450 -2.6546 8.6496 19 16 7.9071 -1.5686 9.3593 20 6 8.0045 -2.2355 10.9872 21 1 7.3815 -3.0725 11.2660 22 6 8.8826 -1.6860 11.9110 23 7 9.6423 -0.6662 11.5711 24 14 8.9864 -2.3935 13.6367 25 1 9.9913 -1.6343 14.4234 26 1 7.6598 -2.2876 14.2957 27 1 9.3901 -3.8207 13.5631 28 6 2.0013 -0.6381 1.2310 29 1 -0.3634 0.5120 -0.8911 30 1 -0.3633 -1.0276 0.0022 31 1 -0.3633 0.5158 0.8889 32 1 1.2758 2.0561 0.4571 33 1 2.2117 1.7001 -1.0203 34 1 3.2137 2.0428 1.6766 35 1 4.1479 1.6459 0.2037 36 1 3.9717 -2.1413 2.8761 37 1 3.8908 -0.9113 5.3910 38 1 5.5658 -0.7817 4.8030 39 1 3.2122 -4.2335 4.9809 40 1 2.9110 -2.8436 6.1200 41 1 5.0973 -5.0438 6.3265 42 1 4.2320 -4.2075 7.6859 43 1 6.9921 -3.6872 8.6848 44 1 5.7224 -2.5617 9.2225 45 1 9.5887 -0.2990 10.6748 46 1 2.0041 -1.7235 1.1314 47 1 1.4238 -0.3322 2.1034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584667074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:41 Heat of formation + Delta-G solvation = -61.973411 kcal Electronic energy + Delta-G solvation = -26778.998561 eV Core-core repulsion = 22894.842799 eV Total energy + Delta-G solvation = -3884.155762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.80251 -41.13812 -39.25364 -38.90708 -35.91196 -34.78246 -33.36985 -32.30810 -30.62741 -29.58727 -29.09544 -27.10329 -26.77393 -24.53721 -23.32871 -23.02948 -22.03301 -21.20588 -20.60699 -19.77931 -18.62739 -18.10964 -17.66521 -17.27984 -16.92412 -16.66980 -16.32606 -16.04409 -15.95834 -15.68455 -15.38520 -15.23036 -14.85439 -14.69117 -14.54869 -14.31370 -14.16042 -13.98387 -13.82582 -13.72942 -13.44706 -13.05410 -12.75486 -12.54909 -12.51337 -12.48791 -12.44201 -12.24783 -11.96965 -11.71999 -11.70657 -11.60288 -11.12503 -11.09235 -10.95577 -10.37182 -10.27347 -9.87648 -9.50076 -8.96214 -8.93056 -6.32376 1.04402 1.42222 1.47723 1.48634 1.59080 1.68366 1.79670 2.18736 2.31747 2.99244 3.01877 3.04747 3.25464 3.41120 3.54740 3.56756 3.65751 3.85374 3.93666 3.96937 4.08952 4.14001 4.25145 4.27744 4.35097 4.42465 4.49872 4.51663 4.52941 4.62831 4.67079 4.68139 4.83106 4.88924 4.94936 4.95879 5.01821 5.03762 5.13001 5.21617 5.32512 5.59860 5.77426 5.96209 6.10161 6.43454 6.51578 6.97923 7.03124 7.16035 8.46897 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024978 B = 0.001859 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.729709 B =15057.910324 C =15779.353566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.525 5.525 3 C 0.038 3.962 4 C -0.124 4.124 5 C -0.104 4.104 6 H 0.135 0.865 7 C 0.515 3.485 8 O -0.590 6.590 9 N -0.702 5.702 10 C 0.119 3.881 11 C 0.121 3.879 12 H 0.125 0.875 13 C -0.123 4.123 14 C 0.093 3.907 15 N -0.650 5.650 16 C 0.555 3.445 17 O -0.567 6.567 18 C -0.097 4.097 19 S -0.200 6.200 20 C -0.613 4.613 21 H 0.076 0.924 22 C -0.020 4.020 23 N -0.912 5.912 24 Si 1.138 2.862 25 H -0.280 1.280 26 H -0.263 1.263 27 H -0.261 1.261 28 C 0.052 3.948 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.024 0.976 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.423 0.577 37 H 0.054 0.946 38 H 0.034 0.966 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.259 0.741 46 H 0.120 0.880 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.396 -11.228 -24.870 35.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.249 5.249 3 C -0.090 4.090 4 C -0.163 4.163 5 C -0.125 4.125 6 H 0.152 0.848 7 C 0.302 3.698 8 O -0.469 6.469 9 N -0.355 5.355 10 C -0.006 4.006 11 C 0.018 3.982 12 H 0.143 0.857 13 C -0.160 4.160 14 C -0.027 4.027 15 N -0.388 5.388 16 C 0.344 3.656 17 O -0.446 6.446 18 C -0.248 4.248 19 S 0.027 5.973 20 C -0.761 4.761 21 H 0.095 0.905 22 C -0.223 4.223 23 N -0.548 5.548 24 Si 0.955 3.045 25 H -0.205 1.205 26 H -0.187 1.187 27 H -0.185 1.185 28 C -0.076 4.076 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.161 0.839 40 H 0.111 0.889 41 H 0.135 0.865 42 H 0.106 0.894 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.070 0.930 46 H 0.138 0.862 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -21.286 -9.151 -24.090 33.424 hybrid contribution -1.127 -0.258 -0.044 1.157 sum -22.412 -9.409 -24.134 34.253 Atomic orbital electron populations 1.22600 0.86502 1.03309 1.01135 1.64816 1.09388 1.14837 1.35886 1.22905 0.94960 0.90118 1.01049 1.22369 0.98888 0.95251 0.99792 1.22245 0.99408 0.99600 0.91288 0.84754 1.21098 0.76435 0.82964 0.89275 1.90740 1.53023 1.35044 1.68132 1.45578 1.67023 1.09204 1.13715 1.21292 0.98473 0.97521 0.83324 1.23153 0.94290 0.94347 0.86412 0.85749 1.23522 0.93935 1.00022 0.98554 1.23398 0.88379 0.88594 1.02370 1.49805 1.40745 1.30893 1.17317 1.19652 0.77352 0.81684 0.86946 1.90710 1.48977 1.31735 1.73164 1.23097 1.02858 1.03846 0.94986 1.85147 1.51458 1.46958 1.13780 1.24017 1.31418 1.23096 0.97525 0.90539 1.27922 0.91012 0.94260 1.09104 1.70922 1.38586 1.23424 1.21818 0.82710 0.77652 0.75898 0.68213 1.20520 1.18727 1.18525 1.23238 0.91196 1.01671 0.91523 0.90451 0.89687 0.95702 0.93806 0.88893 0.92229 0.89834 0.73806 0.92726 0.94698 0.83894 0.88851 0.86531 0.89397 0.87261 0.87578 0.93005 0.86222 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.40 127.69 1.20 1.31 16 2 N -0.53 -6.00 5.55 -909.19 -5.05 -11.05 16 3 C 0.04 0.49 6.70 86.45 0.58 1.07 16 4 C -0.12 -2.08 6.33 31.47 0.20 -1.88 16 5 C -0.10 -1.44 3.45 -10.33 -0.04 -1.48 16 6 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 7 C 0.52 11.32 7.13 87.66 0.63 11.95 16 8 O -0.59 -20.34 15.43 -3.04 -0.05 -20.39 16 9 N -0.70 -11.38 5.55 -463.05 -2.57 -13.95 16 10 C 0.12 2.89 5.47 86.38 0.47 3.37 16 11 C 0.12 2.04 4.06 41.71 0.17 2.21 16 12 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 13 C -0.12 -0.96 8.00 30.84 0.25 -0.71 16 14 C 0.09 1.19 8.42 83.18 0.70 1.89 16 15 N -0.65 -16.57 3.57 -834.22 -2.98 -19.54 16 16 C 0.55 21.75 7.97 87.66 0.70 22.45 16 17 O -0.57 -28.14 15.47 -3.01 -0.05 -28.19 16 18 C -0.10 -4.02 5.99 71.24 0.43 -3.60 16 19 S -0.20 -11.47 19.60 -56.49 -1.11 -12.57 16 20 C -0.61 -36.10 9.50 67.95 0.65 -35.46 16 21 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 22 C -0.02 -1.19 5.49 84.86 0.47 -0.72 16 23 N -0.91 -59.29 13.67 21.65 0.30 -58.99 16 24 Si 1.14 49.79 29.92 68.60 2.05 51.85 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 27 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 28 C 0.05 0.52 5.99 86.65 0.52 1.04 16 29 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.02 0.24 8.00 -2.39 -0.02 0.22 16 32 H 0.04 0.60 7.73 -2.39 -0.02 0.58 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.37 6.85 -2.39 -0.02 1.35 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.42 2.67 8.48 -92.71 -0.79 1.88 16 37 H 0.05 1.50 7.88 -2.39 -0.02 1.48 16 38 H 0.03 1.26 7.15 -2.39 -0.02 1.24 16 39 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.09 0.91 7.93 -2.39 -0.02 0.89 16 41 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 44 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 45 H 0.26 17.61 7.13 -92.71 -0.66 16.95 16 46 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.04 0.51 7.87 -2.39 -0.02 0.49 16 Total: -1.00 -94.39 398.50 -2.24 -96.64 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.29 Total: 14.76 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.91 Total: 1.43 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -10.30 Total: -103.54 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -0.09 Total: -48.57 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.05 Total: 51.85 kcal Atomic # 16 Polarization: -11.47 SS G_CDS: -1.11 Total: -12.57 kcal Total: -94.39 -2.24 -96.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584667074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.663 kcal (2) G-P(sol) polarization free energy of solvation -94.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds