Wall clock time and date at job start Sat Apr 11 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47840 * 111.00068 * 2 1 4 4 C 1.54904 * 104.79564 * 146.36826 * 3 2 1 5 5 C 1.55140 * 101.65267 * 322.92916 * 4 3 2 6 6 H 1.08990 * 110.85892 * 277.19952 * 5 4 3 7 7 C 1.50705 * 110.70527 * 154.03493 * 5 4 3 8 8 O 1.21279 * 119.99850 * 4.94869 * 7 5 4 9 9 N 1.34776 * 120.00213 * 184.94951 * 7 5 4 10 10 C 1.46499 * 120.00033 * 174.97997 * 9 7 5 11 11 C 1.52992 * 115.55258 * 294.97960 * 10 9 7 12 12 N 1.46500 * 109.47496 * 273.05020 * 11 10 9 13 13 C 1.34776 * 120.00196 * 185.53901 * 12 11 10 14 14 O 1.21280 * 120.00064 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99712 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.46769 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99777 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00290 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99976 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99809 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47135 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47503 * 120.00307 * 21 19 17 24 24 H 1.48507 * 109.46952 * 240.00276 * 21 19 17 25 25 C 1.52998 * 117.49522 * 80.65295 * 10 9 7 26 26 C 1.53002 * 117.49802 * 149.31035 * 10 9 7 27 27 C 1.47439 * 111.00441 * 120.85233 * 2 1 3 28 28 H 1.09007 * 109.46941 * 299.15259 * 1 2 3 29 29 H 1.08999 * 109.47784 * 59.15485 * 1 2 3 30 30 H 1.09001 * 109.47086 * 179.15759 * 1 2 3 31 31 H 1.09004 * 110.37497 * 265.19961 * 3 2 1 32 32 H 1.09001 * 110.37389 * 27.42396 * 3 2 1 33 33 H 1.09004 * 110.99199 * 204.83846 * 4 3 2 34 34 H 1.09003 * 110.99452 * 81.02400 * 4 3 2 35 35 H 0.97004 * 119.99678 * 354.98074 * 9 7 5 36 36 H 1.08997 * 109.47396 * 153.05098 * 11 10 9 37 37 H 1.09002 * 109.47251 * 33.05157 * 11 10 9 38 38 H 0.97008 * 119.99724 * 5.54035 * 12 11 10 39 39 H 1.08993 * 109.47334 * 59.99865 * 15 13 12 40 40 H 1.08998 * 109.46820 * 299.99779 * 15 13 12 41 41 H 0.97005 * 119.99780 * 180.02562 * 20 19 17 42 42 H 1.09010 * 117.49676 * 214.99805 * 25 10 9 43 43 H 1.08993 * 117.50674 * 0.02562 * 25 10 9 44 44 H 1.09002 * 117.49835 * 359.97438 * 26 10 9 45 45 H 1.08997 * 117.50186 * 144.97185 * 26 10 9 46 46 H 1.08991 * 109.89457 * 117.33545 * 27 2 1 47 47 H 1.09004 * 110.02025 * 356.21411 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3026 0.8295 5 6 2.9159 0.2821 1.9314 6 1 2.3754 0.7722 2.7410 7 6 4.1384 -0.4233 2.4597 8 8 5.2414 -0.0919 2.0795 9 7 4.0061 -1.4222 3.3547 10 6 5.1831 -2.1807 3.7853 11 6 5.8678 -3.0103 2.6973 12 7 5.2301 -4.3266 2.6129 13 6 5.7396 -5.2712 1.7977 14 8 6.7258 -5.0315 1.1336 15 6 5.0833 -6.6250 1.7105 16 16 5.9950 -7.6633 0.5414 17 6 5.0390 -9.1404 0.6341 18 1 4.1778 -9.1865 1.2843 19 6 5.3919 -10.2446 -0.1294 20 7 6.4411 -10.1883 -0.9223 21 14 4.3780 -11.8104 -0.0317 22 1 3.2598 -11.6171 0.9262 23 1 3.8304 -12.1303 -1.3744 24 1 5.2381 -12.9289 0.4315 25 6 6.0728 -1.5540 4.8607 26 6 5.1778 -2.7466 5.2068 27 6 1.9975 -0.7059 1.1816 28 1 -0.3633 0.5006 0.8975 29 1 -0.3634 0.5269 -0.8823 30 1 -0.3633 -1.0276 -0.0151 31 1 2.2146 1.7039 -1.0183 32 1 1.2881 2.0595 0.4706 33 1 3.5496 2.2719 1.2639 34 1 4.1302 0.9281 0.2241 35 1 3.1314 -1.6389 3.7138 36 1 6.9225 -3.1328 2.9434 37 1 5.7753 -2.4997 1.7387 38 1 4.4411 -4.5182 3.1437 39 1 4.0549 -6.5089 1.3685 40 1 5.0883 -7.0952 2.6939 41 1 6.6875 -10.9599 -1.4561 42 1 7.1460 -1.7328 4.7931 43 1 5.7822 -0.5776 5.2482 44 1 4.2986 -2.5542 5.8218 45 1 5.6616 -3.7101 5.3668 46 1 2.5697 -1.5785 0.8672 47 1 1.1772 -1.0143 1.8299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584878649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:53 Heat of formation + Delta-G solvation = -69.632299 kcal Electronic energy + Delta-G solvation = -27204.334937 eV Core-core repulsion = 23319.847061 eV Total energy + Delta-G solvation = -3884.487876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57525 -40.63163 -39.52201 -38.28616 -35.26159 -34.57715 -34.12014 -32.94735 -31.29025 -30.09248 -27.91525 -27.37933 -26.79297 -24.20190 -23.48990 -22.04609 -21.73171 -21.46611 -20.74234 -19.83009 -18.42352 -18.02558 -17.62590 -17.33964 -16.89319 -16.85852 -16.51095 -16.20634 -15.93575 -15.68694 -15.29023 -15.01682 -14.73682 -14.59454 -14.43703 -14.42679 -14.31844 -13.71797 -13.43241 -13.31031 -13.15445 -12.90629 -12.88251 -12.61569 -12.59455 -12.46969 -12.29712 -12.19893 -11.96313 -11.86005 -11.70665 -11.50932 -11.15404 -11.03731 -10.77856 -10.26322 -10.20106 -10.09943 -9.31417 -8.66931 -8.33995 -6.12449 1.26313 1.42429 1.46997 1.53123 1.58138 1.58885 1.96304 2.13138 2.27894 2.79652 2.99649 3.00364 3.32683 3.35027 3.44114 3.59171 3.74160 3.85779 3.89105 4.01081 4.16345 4.28192 4.29649 4.30340 4.43269 4.48618 4.50090 4.52715 4.57115 4.65194 4.71852 4.74551 4.83368 4.93676 4.95827 4.98941 5.07176 5.16449 5.19371 5.33173 5.42805 5.48561 5.92935 6.08615 6.20810 6.46366 6.50285 7.07226 7.21107 7.23319 8.75597 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.002434 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.231784 B =11499.239107 C =12995.633905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.561 5.561 3 C 0.045 3.955 4 C -0.111 4.111 5 C -0.122 4.122 6 H 0.136 0.864 7 C 0.523 3.477 8 O -0.570 6.570 9 N -0.683 5.683 10 C 0.069 3.931 11 C 0.160 3.840 12 N -0.704 5.704 13 C 0.531 3.469 14 O -0.569 6.569 15 C -0.125 4.125 16 S -0.157 6.157 17 C -0.542 4.542 18 H 0.085 0.915 19 C 0.011 3.989 20 N -0.913 5.913 21 Si 1.001 2.999 22 H -0.254 1.254 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.162 4.162 26 C -0.133 4.133 27 C 0.057 3.943 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.420 0.580 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.417 0.583 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.271 0.729 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.134 0.866 45 H 0.112 0.888 46 H 0.055 0.945 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 24.178 15.730 33.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.285 5.285 3 C -0.082 4.082 4 C -0.150 4.150 5 C -0.144 4.144 6 H 0.154 0.846 7 C 0.310 3.690 8 O -0.448 6.448 9 N -0.335 5.335 10 C -0.019 4.019 11 C 0.035 3.965 12 N -0.358 5.358 13 C 0.317 3.683 14 O -0.448 6.448 15 C -0.276 4.276 16 S 0.070 5.930 17 C -0.690 4.690 18 H 0.103 0.897 19 C -0.194 4.194 20 N -0.550 5.550 21 Si 0.823 3.177 22 H -0.178 1.178 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.201 4.201 26 C -0.171 4.171 27 C -0.071 4.071 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.258 0.742 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.255 0.745 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.152 0.848 45 H 0.130 0.870 46 H 0.073 0.927 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.736 24.485 13.776 31.273 hybrid contribution -1.890 -0.982 1.125 2.409 sum -15.626 23.504 14.901 31.916 Atomic orbital electron populations 1.22595 0.85932 1.02660 1.01641 1.63469 1.09633 1.15310 1.40115 1.23091 0.95128 0.89157 1.00843 1.22569 0.97605 0.99073 0.95722 1.22608 0.94195 0.97473 1.00088 0.84593 1.20863 0.90763 0.79396 0.77949 1.90730 1.29227 1.65600 1.59219 1.45210 1.10103 1.33551 1.44659 1.20536 0.92182 0.99603 0.89579 1.20783 0.96258 0.81638 0.97784 1.45663 1.32719 1.12190 1.45240 1.20191 0.83461 0.85866 0.78758 1.90709 1.27827 1.81310 1.44905 1.23339 1.03869 0.95173 1.05240 1.85694 1.41329 1.10620 1.55385 1.23229 1.16098 0.98833 1.30862 0.89682 1.26171 0.96618 1.02758 0.93837 1.70204 1.26714 1.32014 1.26023 0.84874 0.78066 0.76292 0.78505 1.17757 1.20075 1.19979 1.23402 0.98160 0.98886 0.99639 1.23490 1.03018 0.98714 0.91835 1.22743 0.97742 0.95998 0.90659 0.93700 0.90966 0.91195 0.90328 0.91122 0.89029 0.92591 0.74151 0.91662 0.93985 0.74525 0.87167 0.86667 0.92043 0.88480 0.87424 0.84764 0.86985 0.92658 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.12 127.69 1.16 1.38 16 2 N -0.56 -8.98 5.44 -911.72 -4.96 -13.94 16 3 C 0.04 0.61 6.73 86.77 0.58 1.19 16 4 C -0.11 -1.79 6.13 31.98 0.20 -1.60 16 5 C -0.12 -1.58 3.34 -10.36 -0.03 -1.61 16 6 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 7 C 0.52 10.00 6.70 87.66 0.59 10.59 16 8 O -0.57 -16.72 14.96 -3.02 -0.05 -16.77 16 9 N -0.68 -9.02 5.40 -422.93 -2.28 -11.30 16 10 C 0.07 1.14 1.74 3.60 0.01 1.15 16 11 C 0.16 4.23 5.66 86.38 0.49 4.72 16 12 N -0.70 -18.17 5.43 -463.07 -2.52 -20.69 16 13 C 0.53 20.23 7.85 87.66 0.69 20.91 16 14 O -0.57 -27.97 15.85 -3.03 -0.05 -28.02 16 15 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 16 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 17 C -0.54 -30.97 9.50 67.96 0.65 -30.33 16 18 H 0.09 4.47 7.80 -2.91 -0.02 4.45 16 19 C 0.01 0.61 5.49 84.86 0.47 1.07 16 20 N -0.91 -56.68 13.22 21.65 0.29 -56.40 16 21 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 22 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C -0.16 -2.36 10.11 30.62 0.31 -2.05 16 26 C -0.13 -1.29 9.90 30.62 0.30 -0.99 16 27 C 0.06 0.79 6.44 86.65 0.56 1.35 16 28 H 0.04 0.33 8.10 -2.38 -0.02 0.31 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 0.65 7.78 -2.39 -0.02 0.63 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.31 7.49 -2.39 -0.02 1.30 16 35 H 0.42 2.38 8.83 -92.71 -0.82 1.56 16 36 H 0.07 1.93 7.88 -2.39 -0.02 1.91 16 37 H 0.04 1.43 7.14 -2.39 -0.02 1.41 16 38 H 0.42 7.29 8.34 -92.70 -0.77 6.52 16 39 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 40 H 0.12 3.97 8.14 -2.40 -0.02 3.95 16 41 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 42 H 0.10 1.59 8.04 -2.38 -0.02 1.57 16 43 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.05 1.09 7.81 -2.39 -0.02 1.07 16 47 H 0.09 0.73 7.59 -2.39 -0.02 0.71 16 Total: -1.00 -87.00 403.16 -2.91 -89.90 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -0.61 Total: 20.34 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 6.40 Total: 1.29 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -9.47 Total: -102.33 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -0.09 Total: -44.79 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -87.00 -2.91 -89.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584878649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.271 kcal (2) G-P(sol) polarization free energy of solvation -86.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds