Wall clock time and date at job start Sat Apr 11 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99825 * 2 1 4 4 O 1.20827 * 120.00046 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00142 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.69772 * 6.14028 * 5 3 2 7 7 C 1.53198 * 109.58583 * 126.49037 * 5 3 2 8 8 C 1.53033 * 109.31322 * 174.42805 * 7 5 3 9 9 C 1.53041 * 109.53804 * 298.63335 * 8 7 5 10 10 H 1.09002 * 109.49918 * 301.41358 * 9 8 7 11 11 C 1.50699 * 109.50263 * 181.35001 * 9 8 7 12 12 O 1.20831 * 119.99847 * 359.97438 * 11 9 8 13 13 O 1.34221 * 120.00331 * 179.97438 * 11 9 8 14 14 C 1.52764 * 109.38192 * 61.24074 * 9 8 7 15 15 N 1.46921 * 109.59053 * 245.77878 * 5 3 2 16 16 C 1.34774 * 120.62916 * 6.58341 * 15 5 3 17 17 O 1.21278 * 120.00142 * 356.22091 * 16 15 5 18 18 C 1.50708 * 119.99909 * 176.21999 * 16 15 5 19 19 C 1.53000 * 109.47154 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47176 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47176 * 179.97438 * 20 19 18 22 22 C 1.50698 * 109.47158 * 180.02562 * 21 20 19 23 23 H 1.07996 * 119.99750 * 0.02562 * 22 21 20 24 24 C 1.37876 * 119.99985 * 179.97438 * 22 21 20 25 25 N 1.31518 * 119.99814 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99982 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47200 * 60.00439 * 26 24 22 28 28 H 1.48499 * 109.47131 * 180.02562 * 26 24 22 29 29 H 1.48492 * 109.47453 * 300.00454 * 26 24 22 30 30 H 1.08993 * 109.47375 * 59.99086 * 1 2 3 31 31 H 1.09005 * 109.46863 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46605 * 299.99227 * 1 2 3 33 33 H 1.09009 * 109.49569 * 294.37463 * 7 5 3 34 34 H 1.08997 * 109.49778 * 54.44191 * 7 5 3 35 35 H 1.08999 * 109.46507 * 58.65529 * 8 7 5 36 36 H 1.08998 * 109.46139 * 178.62924 * 8 7 5 37 37 H 0.96708 * 117.00086 * 180.02562 * 13 11 9 38 38 H 1.09006 * 109.50655 * 185.70555 * 14 9 8 39 39 H 1.08998 * 109.43103 * 65.42849 * 14 9 8 40 40 H 1.08993 * 109.47013 * 300.00148 * 18 16 15 41 41 H 1.09005 * 109.46758 * 60.00041 * 18 16 15 42 42 H 1.08996 * 109.47285 * 300.00589 * 19 18 16 43 43 H 1.09008 * 109.46767 * 60.00036 * 19 18 16 44 44 H 1.08993 * 109.47141 * 300.00543 * 20 19 18 45 45 H 1.09005 * 109.46609 * 60.00422 * 20 19 18 46 46 H 1.08996 * 109.47285 * 300.00758 * 21 20 19 47 47 H 1.09008 * 109.46767 * 60.00205 * 21 20 19 48 48 H 0.97002 * 119.99763 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9866 0.2753 -0.1107 7 6 4.0337 2.1593 -1.1610 8 6 5.5498 2.3487 -1.0741 9 6 5.9036 3.0491 0.2398 10 1 5.3940 4.0114 0.2878 11 6 7.3934 3.2650 0.3095 12 8 8.1004 2.8961 -0.5983 13 8 7.9350 3.8669 1.3799 14 6 5.4565 2.1801 1.4139 15 7 4.0290 1.8676 1.2617 16 6 3.1595 2.1248 2.2588 17 8 1.9737 1.9310 2.0945 18 6 3.6610 2.6532 3.5782 19 6 2.4790 2.8585 4.5277 20 6 2.9881 3.3944 5.8673 21 6 1.8061 3.6003 6.8167 22 6 2.3075 4.1287 8.1359 23 1 3.3635 4.3008 8.2824 24 6 1.4179 4.3933 9.1555 25 7 0.1318 4.1841 8.9769 26 14 2.0395 5.0476 10.7910 27 1 2.7328 6.3429 10.5747 28 1 0.8922 5.2475 11.7124 29 1 2.9877 4.0721 11.3863 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 3.7804 1.6814 -2.1075 34 1 3.5412 3.1297 -1.1001 35 1 6.0400 1.3759 -1.1105 36 1 5.8883 2.9575 -1.9125 37 1 8.8951 3.9836 1.3791 38 1 5.6149 2.7201 2.3475 39 1 6.0342 1.2558 1.4216 40 1 4.3582 1.9381 4.0146 41 1 4.1684 3.6048 3.4192 42 1 1.7821 3.5738 4.0911 43 1 1.9712 1.9071 4.6867 44 1 3.6848 2.6788 6.3038 45 1 3.4962 4.3457 5.7086 46 1 1.1097 4.3160 6.3800 47 1 1.2976 2.6492 6.9754 48 1 -0.4940 4.3699 9.6944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598761394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:02 Heat of formation + Delta-G solvation = -223.760464 kcal Electronic energy + Delta-G solvation = -30708.082449 eV Core-core repulsion = 26341.865452 eV Total energy + Delta-G solvation = -4366.216997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61254 -40.67956 -39.42535 -37.82198 -36.58192 -36.28552 -34.95371 -33.48198 -32.84504 -32.30611 -29.73414 -28.20460 -26.55785 -25.49921 -25.32246 -23.07586 -22.47271 -21.10330 -20.77894 -20.00027 -19.22978 -18.51628 -17.97568 -17.38358 -17.04658 -16.83725 -16.20250 -16.18350 -15.82831 -15.75265 -15.53292 -14.77376 -14.45958 -14.37439 -14.23053 -13.95096 -13.66650 -13.47815 -13.30492 -12.91849 -12.58486 -12.32267 -12.29043 -12.18891 -11.99354 -11.91499 -11.74789 -11.62267 -11.53542 -11.35976 -11.03915 -10.97687 -10.73823 -10.54886 -10.52562 -10.41364 -10.30215 -9.70655 -9.61684 -9.22777 -9.14762 -8.99476 -8.29786 -5.94629 -3.97330 1.64707 1.95844 2.35292 2.54713 2.66081 2.88171 3.35571 3.40034 3.42120 3.92029 4.11570 4.19808 4.35439 4.48686 4.56568 4.58086 4.69118 4.83519 4.86076 4.99885 5.10896 5.12572 5.16467 5.23416 5.24969 5.28936 5.32889 5.40624 5.45470 5.57017 5.71259 5.75789 5.93400 6.02797 6.10794 6.26912 6.47005 6.52558 6.82229 6.91156 7.02618 7.20232 7.39964 7.74160 7.80669 7.90223 8.02494 8.06719 8.48107 9.10225 9.66259 11.16683 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.002738 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.783514 B =10222.334031 C =12749.364799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.363 6.363 3 C 0.476 3.524 4 O -0.485 6.485 5 C 0.152 3.848 6 H 0.104 0.896 7 C -0.124 4.124 8 C -0.101 4.101 9 C -0.101 4.101 10 H 0.120 0.880 11 C 0.489 3.511 12 O -0.511 6.511 13 O -0.511 6.511 14 C 0.123 3.877 15 N -0.612 5.612 16 C 0.512 3.488 17 O -0.501 6.501 18 C -0.134 4.134 19 C -0.104 4.104 20 C -0.109 4.109 21 C 0.021 3.979 22 C -0.521 4.521 23 H 0.054 0.946 24 C 0.055 3.945 25 N -0.895 5.895 26 Si 0.892 3.108 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.277 1.277 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.414 0.586 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.016 0.984 47 H 0.015 0.985 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.816 -7.164 -24.001 28.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.280 6.280 3 C 0.318 3.682 4 O -0.371 6.371 5 C 0.047 3.953 6 H 0.121 0.879 7 C -0.162 4.162 8 C -0.138 4.138 9 C -0.121 4.121 10 H 0.138 0.862 11 C 0.330 3.670 12 O -0.398 6.398 13 O -0.323 6.323 14 C 0.000 4.000 15 N -0.351 5.351 16 C 0.303 3.697 17 O -0.375 6.375 18 C -0.174 4.174 19 C -0.142 4.142 20 C -0.147 4.147 21 C -0.016 4.016 22 C -0.559 4.559 23 H 0.072 0.928 24 C -0.146 4.146 25 N -0.535 5.535 26 Si 0.720 3.280 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.203 1.203 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.273 0.727 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.484 -7.115 -24.223 28.164 hybrid contribution 0.829 0.551 0.929 1.361 sum 13.313 -6.564 -23.294 27.621 Atomic orbital electron populations 1.23183 0.75975 1.03120 1.02752 1.86383 1.23714 1.33243 1.84678 1.22531 0.90550 0.82114 0.73001 1.90674 1.66283 1.36109 1.44005 1.20730 0.89160 0.99259 0.86118 0.87857 1.21914 0.95900 1.01397 0.96969 1.21429 0.94920 1.02046 0.95454 1.21432 0.88597 1.03376 0.98727 0.86183 1.23126 0.91408 0.73398 0.79030 1.90746 1.63169 1.47552 1.38339 1.84553 1.30752 1.72862 1.44136 1.21584 0.80524 0.99539 0.98367 1.48171 1.08434 1.64654 1.13793 1.21376 0.85972 0.76662 0.85732 1.90761 1.15952 1.50796 1.79958 1.21845 1.01716 1.02316 0.91491 1.21480 0.95409 1.02301 0.94976 1.21643 1.00356 0.99081 0.93627 1.19083 0.92582 0.97006 0.92977 1.21243 0.93393 1.43310 0.97998 0.92784 1.25041 0.94899 0.95826 0.98784 1.69969 1.01544 1.48926 1.33036 0.86669 0.78218 0.79450 0.83711 1.20272 1.21331 1.20283 0.92380 0.88542 0.91292 0.89166 0.89471 0.90068 0.89581 0.72659 0.87065 0.90057 0.88712 0.88757 0.91674 0.91805 0.93425 0.93402 0.96611 0.96641 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.54 16 2 O -0.36 -4.68 10.56 -41.76 -0.44 -5.12 16 3 C 0.48 6.44 4.51 36.00 0.16 6.61 16 4 O -0.49 -8.21 14.27 -26.96 -0.38 -8.59 16 5 C 0.15 1.45 3.35 -68.75 -0.23 1.22 16 6 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 7 C -0.12 -0.88 5.29 -26.61 -0.14 -1.02 16 8 C -0.10 -0.59 4.46 -26.69 -0.12 -0.71 16 9 C -0.10 -0.62 2.76 -91.87 -0.25 -0.87 16 10 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 11 C 0.49 3.29 7.63 36.00 0.27 3.57 16 12 O -0.51 -4.85 16.74 -18.75 -0.31 -5.16 16 13 O -0.51 -2.61 13.35 -39.23 -0.52 -3.13 16 14 C 0.12 0.81 5.52 -3.93 -0.02 0.79 16 15 N -0.61 -6.12 2.98 -166.79 -0.50 -6.62 16 16 C 0.51 7.07 7.56 -10.98 -0.08 6.99 16 17 O -0.50 -9.02 11.53 -21.74 -0.25 -9.27 16 18 C -0.13 -1.72 4.08 -27.88 -0.11 -1.83 16 19 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 20 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 21 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 22 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 23 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 24 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 25 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 26 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.91 8.13 -51.93 -0.42 0.48 16 33 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.09 0.76 7.86 -51.93 -0.41 0.36 16 35 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 36 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 37 H 0.41 0.54 9.10 45.56 0.41 0.96 16 38 H 0.11 0.67 5.96 -51.93 -0.31 0.36 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 41 H 0.09 1.03 7.52 -51.93 -0.39 0.64 16 42 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 43 H 0.06 1.21 8.10 -51.92 -0.42 0.79 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -38.77 395.01 -8.00 -46.77 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.99 Total: -3.43 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.27 Total: -1.40 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.24 Total: -33.47 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.91 Total: -31.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.77 -8.00 -46.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598761394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.994 kcal (2) G-P(sol) polarization free energy of solvation -38.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds