Wall clock time and date at job start Sat Apr 11 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99825 * 2 1 4 4 O 1.20827 * 120.00046 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00142 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.69772 * 6.14028 * 5 3 2 7 7 C 1.53198 * 109.58583 * 126.49037 * 5 3 2 8 8 C 1.53033 * 109.31322 * 174.42805 * 7 5 3 9 9 C 1.53041 * 109.53804 * 298.63335 * 8 7 5 10 10 H 1.09002 * 109.49918 * 301.41358 * 9 8 7 11 11 C 1.50699 * 109.50263 * 181.35001 * 9 8 7 12 12 O 1.20831 * 119.99847 * 359.97438 * 11 9 8 13 13 O 1.34221 * 120.00331 * 179.97438 * 11 9 8 14 14 C 1.52764 * 109.38192 * 61.24074 * 9 8 7 15 15 N 1.46921 * 109.59053 * 245.77878 * 5 3 2 16 16 C 1.34774 * 120.62916 * 6.58341 * 15 5 3 17 17 O 1.21278 * 120.00142 * 356.22091 * 16 15 5 18 18 C 1.50708 * 119.99909 * 176.21999 * 16 15 5 19 19 C 1.53000 * 109.47154 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47176 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47176 * 179.97438 * 20 19 18 22 22 C 1.50698 * 109.47158 * 180.02562 * 21 20 19 23 23 H 1.07996 * 119.99750 * 0.02562 * 22 21 20 24 24 C 1.37876 * 119.99985 * 179.97438 * 22 21 20 25 25 N 1.31518 * 119.99814 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99982 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47200 * 60.00439 * 26 24 22 28 28 H 1.48499 * 109.47131 * 180.02562 * 26 24 22 29 29 H 1.48492 * 109.47453 * 300.00454 * 26 24 22 30 30 H 1.08993 * 109.47375 * 59.99086 * 1 2 3 31 31 H 1.09005 * 109.46863 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46605 * 299.99227 * 1 2 3 33 33 H 1.09009 * 109.49569 * 294.37463 * 7 5 3 34 34 H 1.08997 * 109.49778 * 54.44191 * 7 5 3 35 35 H 1.08999 * 109.46507 * 58.65529 * 8 7 5 36 36 H 1.08998 * 109.46139 * 178.62924 * 8 7 5 37 37 H 0.96708 * 117.00086 * 180.02562 * 13 11 9 38 38 H 1.09006 * 109.50655 * 185.70555 * 14 9 8 39 39 H 1.08998 * 109.43103 * 65.42849 * 14 9 8 40 40 H 1.08993 * 109.47013 * 300.00148 * 18 16 15 41 41 H 1.09005 * 109.46758 * 60.00041 * 18 16 15 42 42 H 1.08996 * 109.47285 * 300.00589 * 19 18 16 43 43 H 1.09008 * 109.46767 * 60.00036 * 19 18 16 44 44 H 1.08993 * 109.47141 * 300.00543 * 20 19 18 45 45 H 1.09005 * 109.46609 * 60.00422 * 20 19 18 46 46 H 1.08996 * 109.47285 * 300.00758 * 21 20 19 47 47 H 1.09008 * 109.46767 * 60.00205 * 21 20 19 48 48 H 0.97002 * 119.99763 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9866 0.2753 -0.1107 7 6 4.0337 2.1593 -1.1610 8 6 5.5498 2.3487 -1.0741 9 6 5.9036 3.0491 0.2398 10 1 5.3940 4.0114 0.2878 11 6 7.3934 3.2650 0.3095 12 8 8.1004 2.8961 -0.5983 13 8 7.9350 3.8669 1.3799 14 6 5.4565 2.1801 1.4139 15 7 4.0290 1.8676 1.2617 16 6 3.1595 2.1248 2.2588 17 8 1.9737 1.9310 2.0945 18 6 3.6610 2.6532 3.5782 19 6 2.4790 2.8585 4.5277 20 6 2.9881 3.3944 5.8673 21 6 1.8061 3.6003 6.8167 22 6 2.3075 4.1287 8.1359 23 1 3.3635 4.3008 8.2824 24 6 1.4179 4.3933 9.1555 25 7 0.1318 4.1841 8.9769 26 14 2.0395 5.0476 10.7910 27 1 2.7328 6.3429 10.5747 28 1 0.8922 5.2475 11.7124 29 1 2.9877 4.0721 11.3863 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 3.7804 1.6814 -2.1075 34 1 3.5412 3.1297 -1.1001 35 1 6.0400 1.3759 -1.1105 36 1 5.8883 2.9575 -1.9125 37 1 8.8951 3.9836 1.3791 38 1 5.6149 2.7201 2.3475 39 1 6.0342 1.2558 1.4216 40 1 4.3582 1.9381 4.0146 41 1 4.1684 3.6048 3.4192 42 1 1.7821 3.5738 4.0911 43 1 1.9712 1.9071 4.6867 44 1 3.6848 2.6788 6.3038 45 1 3.4962 4.3457 5.7086 46 1 1.1097 4.3160 6.3800 47 1 1.2976 2.6492 6.9754 48 1 -0.4940 4.3699 9.6944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598761394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:01 Heat of formation + Delta-G solvation = -249.486532 kcal Electronic energy + Delta-G solvation = -30709.198015 eV Core-core repulsion = 26341.865452 eV Total energy + Delta-G solvation = -4367.332563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.44106 -41.30925 -40.42010 -38.61949 -37.34980 -37.05744 -36.63202 -34.70109 -34.15556 -33.25478 -31.35656 -29.08732 -27.85942 -26.65134 -26.06671 -24.38748 -23.40942 -22.29959 -21.59550 -21.36330 -20.07773 -18.99691 -18.96246 -18.42518 -18.16456 -17.81971 -17.64286 -17.02799 -16.80588 -16.61319 -16.54148 -16.35759 -15.71293 -15.22481 -14.98944 -14.72475 -14.58168 -14.46838 -14.40842 -14.11169 -13.83762 -13.59594 -13.57390 -13.21267 -13.07462 -12.82819 -12.78183 -12.67309 -12.45406 -12.37510 -12.23902 -12.15797 -12.09464 -11.89881 -11.72208 -11.59317 -11.37863 -11.32523 -11.31329 -11.11304 -10.66919 -10.53914 -9.95113 -8.17998 -6.30441 1.02625 1.17990 1.40958 1.44667 1.45136 1.52904 1.75546 1.89507 2.16954 2.42685 3.14766 3.39688 3.43706 3.67015 3.70041 3.72956 3.96829 3.98917 4.05389 4.11585 4.26605 4.27605 4.34173 4.38006 4.50337 4.58686 4.61709 4.66407 4.67251 4.70348 4.80147 4.84827 4.86334 5.00130 5.16838 5.21843 5.22296 5.33913 5.36986 5.50979 5.56995 5.66835 5.78362 5.88511 6.06554 6.25629 6.81105 6.88280 7.03428 7.04198 7.39388 8.94181 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.002738 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.783514 B =10222.334031 C =12749.364799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.368 6.368 3 C 0.470 3.530 4 O -0.528 6.528 5 C 0.149 3.851 6 H 0.133 0.867 7 C -0.115 4.115 8 C -0.094 4.094 9 C -0.100 4.100 10 H 0.121 0.879 11 C 0.500 3.500 12 O -0.540 6.540 13 O -0.509 6.509 14 C 0.118 3.882 15 N -0.602 5.602 16 C 0.506 3.494 17 O -0.554 6.554 18 C -0.123 4.123 19 C -0.094 4.094 20 C -0.094 4.094 21 C 0.019 3.981 22 C -0.542 4.542 23 H 0.068 0.932 24 C -0.008 4.008 25 N -0.939 5.939 26 Si 0.970 3.030 27 H -0.264 1.264 28 H -0.287 1.287 29 H -0.263 1.263 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.038 0.962 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.431 0.569 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.036 0.964 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.062 0.938 46 H -0.019 1.019 47 H -0.017 1.017 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.483 -7.446 -24.067 30.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.285 6.285 3 C 0.314 3.686 4 O -0.416 6.416 5 C 0.045 3.955 6 H 0.151 0.849 7 C -0.153 4.153 8 C -0.131 4.131 9 C -0.119 4.119 10 H 0.138 0.862 11 C 0.343 3.657 12 O -0.430 6.430 13 O -0.323 6.323 14 C -0.003 4.003 15 N -0.339 5.339 16 C 0.297 3.703 17 O -0.432 6.432 18 C -0.162 4.162 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.018 4.018 22 C -0.580 4.580 23 H 0.087 0.913 24 C -0.205 4.205 25 N -0.580 5.580 26 Si 0.794 3.206 27 H -0.188 1.188 28 H -0.212 1.212 29 H -0.188 1.188 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.057 0.943 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.293 0.707 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.081 0.919 46 H -0.001 1.001 47 H 0.001 0.999 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.233 -7.403 -24.305 30.150 hybrid contribution -0.350 0.632 0.921 1.171 sum 15.883 -6.772 -23.384 29.067 Atomic orbital electron populations 1.23318 0.75436 1.04963 1.01565 1.86384 1.24456 1.33241 1.84380 1.23397 0.92211 0.81526 0.71490 1.90645 1.67617 1.37405 1.45930 1.21054 0.86425 1.01338 0.86635 0.84923 1.21879 0.96682 0.99978 0.96730 1.21387 0.93531 1.02717 0.95510 1.21397 0.88473 1.03425 0.98652 0.86155 1.23031 0.91224 0.72706 0.78755 1.90748 1.63814 1.48982 1.39445 1.84516 1.32416 1.72166 1.43212 1.21889 0.78314 1.01051 0.99078 1.48142 1.09430 1.63325 1.12968 1.21510 0.85613 0.76446 0.86736 1.90761 1.18247 1.53245 1.80967 1.21731 0.99741 1.04710 0.90048 1.21236 0.96953 1.00142 0.94923 1.21434 0.97883 1.00480 0.93340 1.19043 0.94249 0.94234 0.94242 1.21739 0.94206 1.43176 0.98836 0.91334 1.26111 0.94964 0.95983 1.03407 1.70137 1.03179 1.50160 1.34518 0.85430 0.77782 0.79312 0.78097 1.18849 1.21227 1.18757 0.91740 0.85179 0.94318 0.87423 0.91489 0.88935 0.89224 0.70693 0.85926 0.87576 0.85461 0.86012 0.94465 0.93972 0.91643 0.91921 1.00083 0.99860 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 10.56 113.37 1.20 2.12 16 2 O -0.37 -9.56 10.56 -49.01 -0.52 -10.08 16 3 C 0.47 12.87 4.51 71.24 0.32 13.19 16 4 O -0.53 -18.75 14.27 29.81 0.43 -18.33 16 5 C 0.15 2.61 3.35 44.23 0.15 2.75 16 6 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 7 C -0.11 -1.43 5.29 30.67 0.16 -1.27 16 8 C -0.09 -0.83 4.46 30.62 0.14 -0.70 16 9 C -0.10 -0.92 2.76 -11.61 -0.03 -0.96 16 10 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 11 C 0.50 5.20 7.63 71.24 0.54 5.74 16 12 O -0.54 -8.84 16.74 21.95 0.37 -8.48 16 13 O -0.51 -3.47 13.35 -51.33 -0.69 -4.15 16 14 C 0.12 1.13 5.52 86.22 0.48 1.60 16 15 N -0.60 -10.82 2.98 -799.99 -2.38 -13.20 16 16 C 0.51 13.62 7.56 87.66 0.66 14.28 16 17 O -0.55 -20.77 11.53 23.07 0.27 -20.50 16 18 C -0.12 -2.91 4.08 29.85 0.12 -2.79 16 19 C -0.09 -3.40 4.50 30.59 0.14 -3.26 16 20 C -0.09 -3.77 5.15 30.59 0.16 -3.62 16 21 C 0.02 1.07 4.97 29.85 0.15 1.22 16 22 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 23 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 24 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 25 N -0.94 -59.53 13.29 21.45 0.28 -59.25 16 26 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 27 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 28 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 29 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 30 H 0.06 1.35 8.13 -2.39 -0.02 1.34 16 31 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.04 1.11 8.13 -2.38 -0.02 1.09 16 33 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.07 1.14 7.86 -2.39 -0.02 1.12 16 35 H 0.09 0.67 8.13 -2.39 -0.02 0.65 16 36 H 0.09 0.80 8.07 -2.39 -0.02 0.78 16 37 H 0.43 -0.25 9.10 -74.05 -0.67 -0.92 16 38 H 0.12 0.94 5.96 -2.38 -0.01 0.92 16 39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.13 2.22 8.08 -2.39 -0.02 2.20 16 41 H 0.12 2.24 7.52 -2.38 -0.02 2.22 16 42 H 0.04 1.52 8.10 -2.39 -0.02 1.50 16 43 H 0.04 1.67 8.10 -2.38 -0.02 1.65 16 44 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 45 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 46 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 47 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 48 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -89.22 395.01 4.95 -84.26 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 0.29 Total: 5.76 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 4.88 Total: -2.76 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -2.10 Total: -72.45 kcal Atomic # 8 Polarization: -61.40 SS G_CDS: -0.14 Total: -61.54 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -89.22 4.95 -84.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598761394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.222 kcal (2) G-P(sol) polarization free energy of solvation -89.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds