Wall clock time and date at job start Sat Apr 11 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99708 * 2 1 4 4 O 1.20823 * 120.00466 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99611 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.50081 * 299.99894 * 5 3 2 7 7 C 1.53042 * 109.49577 * 179.97438 * 5 3 2 8 8 C 1.53044 * 109.53779 * 178.65052 * 7 5 3 9 9 C 1.53191 * 109.30987 * 61.36695 * 8 7 5 10 10 H 1.08997 * 109.58607 * 65.29771 * 9 8 7 11 11 C 1.50701 * 109.58428 * 185.57889 * 9 8 7 12 12 O 1.20823 * 120.00453 * 53.94592 * 11 9 8 13 13 O 1.34230 * 119.99936 * 233.94884 * 11 9 8 14 14 N 1.46921 * 108.77625 * 305.36413 * 9 8 7 15 15 C 1.34780 * 120.63162 * 233.58804 * 14 9 8 16 16 O 1.21278 * 119.99929 * 3.62486 * 15 14 9 17 17 C 1.50703 * 119.99853 * 183.61728 * 15 14 9 18 18 C 1.53005 * 109.46980 * 180.02562 * 17 15 14 19 19 C 1.52992 * 109.47415 * 180.02562 * 18 17 15 20 20 C 1.52992 * 109.47579 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.47476 * 179.97438 * 20 19 18 22 22 H 1.07994 * 119.99867 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99852 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99715 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00339 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47508 * 89.99818 * 25 23 21 27 27 H 1.48505 * 109.47516 * 209.99482 * 25 23 21 28 28 H 1.48494 * 109.47263 * 329.99696 * 25 23 21 29 29 C 1.46930 * 118.74168 * 53.60762 * 14 9 8 30 30 H 1.09004 * 109.46959 * 299.99652 * 1 2 3 31 31 H 1.09000 * 109.47156 * 59.99451 * 1 2 3 32 32 H 1.08993 * 109.47212 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46168 * 298.67031 * 7 5 3 34 34 H 1.09002 * 109.46121 * 58.63043 * 7 5 3 35 35 H 1.09002 * 109.49632 * 181.31681 * 8 7 5 36 36 H 1.09001 * 109.49794 * 301.38203 * 8 7 5 37 37 H 0.96700 * 116.99983 * 179.97438 * 13 11 9 38 38 H 1.09001 * 109.47003 * 300.00037 * 17 15 14 39 39 H 1.09002 * 109.47168 * 60.00630 * 17 15 14 40 40 H 1.09003 * 109.46781 * 300.00191 * 18 17 15 41 41 H 1.08993 * 109.47237 * 59.99613 * 18 17 15 42 42 H 1.08998 * 109.47144 * 300.00235 * 19 18 17 43 43 H 1.09002 * 109.47185 * 59.99503 * 19 18 17 44 44 H 1.09003 * 109.46825 * 300.00091 * 20 19 18 45 45 H 1.09002 * 109.47142 * 59.99631 * 20 19 18 46 46 H 0.97001 * 120.00033 * 180.02562 * 24 23 21 47 47 H 1.08997 * 109.58845 * 186.60449 * 29 14 9 48 48 H 1.09004 * 109.58007 * 66.17708 * 29 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9569 0.7807 0.8890 7 6 4.0009 2.7423 -0.0011 8 6 5.5288 2.8236 0.0323 9 6 6.0994 2.1499 -1.2197 10 1 5.8041 2.7135 -2.1046 11 6 7.6030 2.1045 -1.1281 12 8 8.1348 1.6148 -0.1600 13 8 8.3514 2.6083 -2.1220 14 7 5.5697 0.7821 -1.3038 15 6 6.4024 -0.2706 -1.4257 16 8 7.6029 -0.1001 -1.4009 17 6 5.8418 -1.6594 -1.5928 18 6 6.9911 -2.6630 -1.7071 19 6 6.4220 -4.0729 -1.8773 20 6 7.5712 -5.0764 -1.9923 21 6 7.0106 -6.4652 -2.1593 22 1 5.9416 -6.6170 -2.1817 23 6 7.8625 -7.5420 -2.2846 24 7 7.3733 -8.7541 -2.4299 25 14 9.7115 -7.2795 -2.2466 26 1 10.1966 -7.3756 -0.8463 27 1 10.3763 -8.3189 -3.0730 28 1 10.0320 -5.9353 -2.7902 29 6 4.1147 0.5836 -1.2528 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.6309 3.2303 -0.9028 34 1 3.5914 3.2426 0.8764 35 1 5.8371 3.8688 0.0555 36 1 5.9009 2.3147 0.9215 37 1 9.3114 2.5568 -2.0181 38 1 5.2264 -1.9092 -0.7285 39 1 5.2330 -1.6993 -2.4961 40 1 7.6068 -2.4133 -2.5712 41 1 7.5995 -2.6230 -0.8037 42 1 5.8060 -4.3228 -1.0135 43 1 5.8137 -4.1126 -2.7809 44 1 8.1868 -4.8262 -2.8563 45 1 8.1798 -5.0368 -1.0888 46 1 7.9726 -9.5118 -2.5176 47 1 3.8927 -0.4826 -1.2085 48 1 3.6554 1.0181 -2.1408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598779647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:10 Heat of formation + Delta-G solvation = -220.554990 kcal Electronic energy + Delta-G solvation = -30631.992984 eV Core-core repulsion = 26265.914987 eV Total energy + Delta-G solvation = -4366.077997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66259 -40.82493 -39.28235 -37.98261 -36.85382 -36.03922 -35.09660 -33.53374 -32.85513 -32.32873 -30.13389 -28.39001 -26.94802 -25.66429 -25.31413 -22.79745 -22.67493 -21.15666 -20.71956 -20.05263 -19.23400 -18.31474 -18.07015 -17.49695 -17.13643 -17.00316 -16.59965 -16.40489 -15.99404 -15.87432 -15.14454 -14.95173 -14.53253 -14.28968 -14.18830 -14.00282 -13.80260 -13.58597 -13.35457 -13.20911 -12.65280 -12.53753 -12.45315 -12.27093 -12.15315 -12.04144 -11.79075 -11.62815 -11.52121 -11.38056 -11.23430 -11.13316 -10.95516 -10.74028 -10.55651 -10.44731 -9.91093 -9.78791 -9.65262 -9.43880 -9.20767 -9.12041 -8.49061 -6.00430 -3.97868 1.63420 1.90826 2.17310 2.40116 2.75814 2.84473 3.35795 3.42774 3.48786 3.89231 4.04963 4.12903 4.27193 4.49346 4.50432 4.54603 4.61422 4.71871 4.77323 4.78786 4.88291 5.04476 5.09503 5.13940 5.14587 5.18208 5.21453 5.30723 5.34534 5.44418 5.67780 5.68115 5.84773 5.93261 5.99349 6.11435 6.38724 6.55368 6.66228 6.77713 6.89144 6.99152 7.22845 7.37954 7.50658 7.80549 7.85141 8.00033 8.58313 9.04549 9.63092 11.13074 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.002816 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.055056 B = 9941.596107 C =12423.191614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.470 3.530 4 O -0.502 6.502 5 C -0.101 4.101 6 H 0.121 0.879 7 C -0.101 4.101 8 C -0.124 4.124 9 C 0.152 3.848 10 H 0.104 0.896 11 C 0.493 3.507 12 O -0.494 6.494 13 O -0.520 6.520 14 N -0.612 5.612 15 C 0.513 3.487 16 O -0.504 6.504 17 C -0.135 4.135 18 C -0.107 4.107 19 C -0.102 4.102 20 C -0.015 4.015 21 C -0.519 4.519 22 H 0.071 0.929 23 C 0.065 3.935 24 N -0.906 5.906 25 Si 0.879 3.121 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.265 1.265 29 C 0.122 3.878 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.412 0.588 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.262 0.738 47 H 0.112 0.888 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.865 28.034 3.734 30.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.312 3.688 4 O -0.389 6.389 5 C -0.121 4.121 6 H 0.139 0.861 7 C -0.138 4.138 8 C -0.162 4.162 9 C 0.048 3.952 10 H 0.122 0.878 11 C 0.334 3.666 12 O -0.379 6.379 13 O -0.333 6.333 14 N -0.350 5.350 15 C 0.303 3.697 16 O -0.379 6.379 17 C -0.175 4.175 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.053 4.053 21 C -0.557 4.557 22 H 0.089 0.911 23 C -0.136 4.136 24 N -0.545 5.545 25 Si 0.707 3.293 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.189 1.189 29 C -0.001 4.001 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.271 0.729 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.130 0.870 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.643 28.092 3.943 30.664 hybrid contribution 1.241 -0.028 0.132 1.248 sum -10.402 28.064 4.075 30.206 Atomic orbital electron populations 1.23338 0.75718 1.04215 1.02593 1.86535 1.23893 1.32930 1.83651 1.23429 0.91382 0.81613 0.72381 1.90687 1.66959 1.36367 1.44857 1.21539 0.87706 1.00175 1.02672 0.86149 1.21428 0.94397 0.93112 1.04893 1.21919 0.95318 1.01811 0.97144 1.20679 0.88087 0.85168 1.01268 0.87800 1.22266 0.89848 0.73913 0.80552 1.90725 1.73716 1.39629 1.33873 1.84404 1.25006 1.76286 1.47572 1.48158 1.06811 1.04621 1.75383 1.21356 0.86694 0.86982 0.74620 1.90756 1.15039 1.83576 1.48496 1.21834 1.01323 0.90096 1.04201 1.21512 0.95881 0.94180 1.02901 1.21467 0.99443 0.92160 1.00862 1.19572 0.94460 0.94953 0.96285 1.21177 0.95185 0.89696 1.49636 0.91078 1.25037 0.98822 0.95109 0.94622 1.69923 1.35171 0.98677 1.50775 0.86779 0.85985 0.78225 0.78331 1.20310 1.21471 1.18924 1.21694 0.79075 1.03089 0.96198 0.91812 0.91701 0.87641 0.90076 0.89547 0.89139 0.89460 0.72899 0.88532 0.88518 0.91785 0.91650 0.92764 0.92782 0.96649 0.97057 0.92819 0.86996 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.63 10.50 -39.25 -0.41 -3.04 16 3 C 0.47 3.61 7.26 36.01 0.26 3.87 16 4 O -0.50 -5.01 15.73 -18.75 -0.29 -5.30 16 5 C -0.10 -0.63 2.78 -91.65 -0.25 -0.88 16 6 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 7 C -0.10 -0.57 4.46 -26.69 -0.12 -0.69 16 8 C -0.12 -0.82 5.29 -26.61 -0.14 -0.96 16 9 C 0.15 1.35 3.35 -68.75 -0.23 1.12 16 10 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 11 C 0.49 6.02 4.90 36.01 0.18 6.20 16 12 O -0.49 -7.90 15.26 -26.97 -0.41 -8.31 16 13 O -0.52 -5.40 13.42 -41.63 -0.56 -5.96 16 14 N -0.61 -5.79 2.97 -166.54 -0.49 -6.28 16 15 C 0.51 6.71 7.56 -10.98 -0.08 6.63 16 16 O -0.50 -8.62 11.51 -21.63 -0.25 -8.87 16 17 C -0.13 -1.63 4.08 -27.88 -0.11 -1.74 16 18 C -0.11 -1.76 4.50 -26.73 -0.12 -1.88 16 19 C -0.10 -1.96 5.15 -26.74 -0.14 -2.10 16 20 C -0.02 -0.37 4.04 -27.89 -0.11 -0.49 16 21 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 22 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 23 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 24 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 25 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 29 C 0.12 0.79 5.55 -3.71 -0.02 0.77 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 34 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.72 7.87 -51.93 -0.41 0.31 16 37 H 0.41 3.01 9.10 45.56 0.41 3.42 16 38 H 0.10 0.99 7.54 -51.93 -0.39 0.60 16 39 H 0.10 0.97 8.07 -51.93 -0.42 0.55 16 40 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 41 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 45 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.11 0.66 5.95 -51.93 -0.31 0.35 16 48 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -38.82 391.43 -7.63 -46.44 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.95 Total: -2.31 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -0.26 Total: -2.43 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.28 Total: -33.86 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.93 Total: -31.48 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.82 -7.63 -46.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598779647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.110 kcal (2) G-P(sol) polarization free energy of solvation -38.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds