Wall clock time and date at job start Sat Apr 11 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99708 * 2 1 4 4 O 1.20823 * 120.00466 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99611 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.50081 * 299.99894 * 5 3 2 7 7 C 1.53042 * 109.49577 * 179.97438 * 5 3 2 8 8 C 1.53044 * 109.53779 * 178.65052 * 7 5 3 9 9 C 1.53191 * 109.30987 * 61.36695 * 8 7 5 10 10 H 1.08997 * 109.58607 * 65.29771 * 9 8 7 11 11 C 1.50701 * 109.58428 * 185.57889 * 9 8 7 12 12 O 1.20823 * 120.00453 * 53.94592 * 11 9 8 13 13 O 1.34230 * 119.99936 * 233.94884 * 11 9 8 14 14 N 1.46921 * 108.77625 * 305.36413 * 9 8 7 15 15 C 1.34780 * 120.63162 * 233.58804 * 14 9 8 16 16 O 1.21278 * 119.99929 * 3.62486 * 15 14 9 17 17 C 1.50703 * 119.99853 * 183.61728 * 15 14 9 18 18 C 1.53005 * 109.46980 * 180.02562 * 17 15 14 19 19 C 1.52992 * 109.47415 * 180.02562 * 18 17 15 20 20 C 1.52992 * 109.47579 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.47476 * 179.97438 * 20 19 18 22 22 H 1.07994 * 119.99867 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99852 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99715 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00339 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47508 * 89.99818 * 25 23 21 27 27 H 1.48505 * 109.47516 * 209.99482 * 25 23 21 28 28 H 1.48494 * 109.47263 * 329.99696 * 25 23 21 29 29 C 1.46930 * 118.74168 * 53.60762 * 14 9 8 30 30 H 1.09004 * 109.46959 * 299.99652 * 1 2 3 31 31 H 1.09000 * 109.47156 * 59.99451 * 1 2 3 32 32 H 1.08993 * 109.47212 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46168 * 298.67031 * 7 5 3 34 34 H 1.09002 * 109.46121 * 58.63043 * 7 5 3 35 35 H 1.09002 * 109.49632 * 181.31681 * 8 7 5 36 36 H 1.09001 * 109.49794 * 301.38203 * 8 7 5 37 37 H 0.96700 * 116.99983 * 179.97438 * 13 11 9 38 38 H 1.09001 * 109.47003 * 300.00037 * 17 15 14 39 39 H 1.09002 * 109.47168 * 60.00630 * 17 15 14 40 40 H 1.09003 * 109.46781 * 300.00191 * 18 17 15 41 41 H 1.08993 * 109.47237 * 59.99613 * 18 17 15 42 42 H 1.08998 * 109.47144 * 300.00235 * 19 18 17 43 43 H 1.09002 * 109.47185 * 59.99503 * 19 18 17 44 44 H 1.09003 * 109.46825 * 300.00091 * 20 19 18 45 45 H 1.09002 * 109.47142 * 59.99631 * 20 19 18 46 46 H 0.97001 * 120.00033 * 180.02562 * 24 23 21 47 47 H 1.08997 * 109.58845 * 186.60449 * 29 14 9 48 48 H 1.09004 * 109.58007 * 66.17708 * 29 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9569 0.7807 0.8890 7 6 4.0009 2.7423 -0.0011 8 6 5.5288 2.8236 0.0323 9 6 6.0994 2.1499 -1.2197 10 1 5.8041 2.7135 -2.1046 11 6 7.6030 2.1045 -1.1281 12 8 8.1348 1.6148 -0.1600 13 8 8.3514 2.6083 -2.1220 14 7 5.5697 0.7821 -1.3038 15 6 6.4024 -0.2706 -1.4257 16 8 7.6029 -0.1001 -1.4009 17 6 5.8418 -1.6594 -1.5928 18 6 6.9911 -2.6630 -1.7071 19 6 6.4220 -4.0729 -1.8773 20 6 7.5712 -5.0764 -1.9923 21 6 7.0106 -6.4652 -2.1593 22 1 5.9416 -6.6170 -2.1817 23 6 7.8625 -7.5420 -2.2846 24 7 7.3733 -8.7541 -2.4299 25 14 9.7115 -7.2795 -2.2466 26 1 10.1966 -7.3756 -0.8463 27 1 10.3763 -8.3189 -3.0730 28 1 10.0320 -5.9353 -2.7902 29 6 4.1147 0.5836 -1.2528 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.6309 3.2303 -0.9028 34 1 3.5914 3.2426 0.8764 35 1 5.8371 3.8688 0.0555 36 1 5.9009 2.3147 0.9215 37 1 9.3114 2.5568 -2.0181 38 1 5.2264 -1.9092 -0.7285 39 1 5.2330 -1.6993 -2.4961 40 1 7.6068 -2.4133 -2.5712 41 1 7.5995 -2.6230 -0.8037 42 1 5.8060 -4.3228 -1.0135 43 1 5.8137 -4.1126 -2.7809 44 1 8.1868 -4.8262 -2.8563 45 1 8.1798 -5.0368 -1.0888 46 1 7.9726 -9.5118 -2.5176 47 1 3.8927 -0.4826 -1.2085 48 1 3.6554 1.0181 -2.1408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598779647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:09 Heat of formation + Delta-G solvation = -246.271476 kcal Electronic energy + Delta-G solvation = -30633.108135 eV Core-core repulsion = 26265.914987 eV Total energy + Delta-G solvation = -4367.193148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.41535 -41.49426 -40.20423 -38.71141 -37.47712 -36.96834 -36.64793 -34.68077 -34.18057 -33.29079 -31.70439 -28.92390 -28.04850 -26.86026 -25.91893 -24.12197 -23.40368 -22.26334 -21.62554 -21.33114 -20.02285 -19.19753 -18.85471 -18.64885 -18.27348 -17.79666 -17.68449 -17.15904 -16.86791 -16.71727 -16.33323 -15.93136 -15.86559 -15.42280 -14.99794 -14.79708 -14.69488 -14.52423 -14.24556 -14.21123 -13.90673 -13.76927 -13.65491 -13.40042 -12.98211 -12.87677 -12.84909 -12.66554 -12.47106 -12.34551 -12.16743 -12.07171 -11.89820 -11.75563 -11.74323 -11.57223 -11.45374 -11.35631 -11.33354 -11.24677 -10.75542 -10.68425 -9.95565 -8.29291 -6.31829 1.01934 1.14235 1.34522 1.35766 1.44151 1.48420 1.69939 1.98901 2.06248 2.35856 3.06316 3.37221 3.43674 3.63786 3.69379 3.73572 3.96909 4.00333 4.12702 4.14275 4.20903 4.34565 4.36762 4.40119 4.44354 4.55610 4.59117 4.64437 4.67688 4.74870 4.79995 4.82949 4.85310 4.99800 5.12826 5.17629 5.20817 5.24467 5.28376 5.40187 5.61128 5.66591 5.69384 5.76265 6.06092 6.30486 6.67759 6.76262 6.92219 7.14073 7.33039 8.87266 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.002816 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.055056 B = 9941.596107 C =12423.191614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.476 3.524 4 O -0.527 6.527 5 C -0.097 4.097 6 H 0.123 0.877 7 C -0.094 4.094 8 C -0.115 4.115 9 C 0.148 3.852 10 H 0.132 0.868 11 C 0.490 3.510 12 O -0.539 6.539 13 O -0.519 6.519 14 N -0.602 5.602 15 C 0.509 3.491 16 O -0.552 6.552 17 C -0.128 4.128 18 C -0.096 4.096 19 C -0.092 4.092 20 C -0.017 4.017 21 C -0.528 4.528 22 H 0.040 0.960 23 C 0.005 3.995 24 N -0.950 5.950 25 Si 0.945 3.055 26 H -0.269 1.269 27 H -0.281 1.281 28 H -0.253 1.253 29 C 0.118 3.882 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.422 0.578 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.013 0.987 45 H 0.009 0.991 46 H 0.266 0.734 47 H 0.122 0.878 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.632 29.901 3.402 32.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.319 3.681 4 O -0.415 6.415 5 C -0.117 4.117 6 H 0.141 0.859 7 C -0.132 4.132 8 C -0.153 4.153 9 C 0.045 3.955 10 H 0.150 0.850 11 C 0.333 3.667 12 O -0.428 6.428 13 O -0.332 6.332 14 N -0.339 5.339 15 C 0.299 3.701 16 O -0.431 6.431 17 C -0.167 4.167 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.055 4.055 21 C -0.566 4.566 22 H 0.058 0.942 23 C -0.192 4.192 24 N -0.591 5.591 25 Si 0.769 3.231 26 H -0.194 1.194 27 H -0.207 1.207 28 H -0.177 1.177 29 C -0.003 4.003 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.283 0.717 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.031 0.969 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.140 0.860 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.455 29.991 3.599 32.673 hybrid contribution 1.381 -0.615 0.227 1.529 sum -11.074 29.377 3.826 31.627 Atomic orbital electron populations 1.23542 0.74717 1.05569 1.02671 1.86530 1.24978 1.32763 1.83361 1.23576 0.91677 0.81304 0.71511 1.90682 1.67570 1.37129 1.46158 1.21524 0.86793 1.00627 1.02733 0.85938 1.21392 0.93353 0.92840 1.05566 1.21876 0.95791 1.02389 0.95212 1.20996 0.85897 0.85166 1.03489 0.85044 1.22964 0.91274 0.72624 0.79810 1.90699 1.74854 1.41657 1.35583 1.84388 1.26045 1.75777 1.46989 1.48122 1.07736 1.04177 1.73817 1.21453 0.86302 0.87945 0.74358 1.90746 1.17049 1.84316 1.50959 1.21753 0.99832 0.88494 1.06642 1.21276 0.97090 0.93656 1.01429 1.21323 0.97690 0.92497 1.01471 1.19574 0.96153 0.93854 0.95878 1.21543 0.93991 0.92133 1.48947 0.94187 1.25955 1.04038 0.94783 0.94392 1.70056 1.37099 0.99717 1.52246 0.85734 0.79819 0.78729 0.78835 1.19409 1.20711 1.17712 1.21951 0.77056 1.04093 0.97206 0.91942 0.91477 0.85729 0.89041 0.89296 0.87293 0.91340 0.71738 0.86244 0.85727 0.93040 0.93473 0.92273 0.92045 0.96894 0.97230 0.92532 0.86026 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.44 16 2 O -0.36 -4.52 10.50 -51.39 -0.54 -5.06 16 3 C 0.48 6.21 7.26 71.24 0.52 6.73 16 4 O -0.53 -9.46 15.73 21.97 0.35 -9.12 16 5 C -0.10 -0.95 2.78 -11.46 -0.03 -0.98 16 6 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 7 C -0.09 -0.81 4.46 30.62 0.14 -0.68 16 8 C -0.11 -1.28 5.29 30.67 0.16 -1.12 16 9 C 0.15 2.30 3.35 44.23 0.15 2.45 16 10 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 11 C 0.49 11.62 4.90 71.24 0.35 11.96 16 12 O -0.54 -17.46 15.26 29.84 0.46 -17.01 16 13 O -0.52 -10.34 13.42 -49.15 -0.66 -11.00 16 14 N -0.60 -9.93 2.97 -799.19 -2.38 -12.30 16 15 C 0.51 12.48 7.56 87.66 0.66 13.14 16 16 O -0.55 -18.75 11.51 22.97 0.26 -18.49 16 17 C -0.13 -2.77 4.08 29.85 0.12 -2.65 16 18 C -0.10 -3.07 4.50 30.59 0.14 -2.93 16 19 C -0.09 -3.45 5.15 30.59 0.16 -3.30 16 20 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 21 C -0.53 -30.91 9.66 25.60 0.25 -30.67 16 22 H 0.04 2.51 7.99 -2.91 -0.02 2.49 16 23 C 0.00 0.30 5.47 84.65 0.46 0.76 16 24 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 25 Si 0.94 46.13 27.47 68.60 1.88 48.01 16 26 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 28 H -0.25 -11.80 6.54 99.48 0.65 -11.14 16 29 C 0.12 1.13 5.55 86.36 0.48 1.61 16 30 H 0.06 0.57 8.13 -2.38 -0.02 0.55 16 31 H 0.07 0.56 8.13 -2.39 -0.02 0.54 16 32 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.66 8.13 -2.39 -0.02 0.64 16 34 H 0.09 0.78 8.07 -2.39 -0.02 0.76 16 35 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.06 7.87 -2.39 -0.02 1.04 16 37 H 0.42 6.09 9.10 -74.06 -0.67 5.41 16 38 H 0.12 2.06 7.54 -2.39 -0.02 2.04 16 39 H 0.12 2.02 8.07 -2.39 -0.02 2.01 16 40 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 41 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 45 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.12 0.96 5.95 -2.39 -0.01 0.95 16 48 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -85.89 391.43 4.78 -81.11 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.24 Total: 8.84 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 4.87 Total: -4.94 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -2.08 Total: -72.36 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -0.13 Total: -60.67 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.01 kcal Total: -85.89 4.78 -81.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598779647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.160 kcal (2) G-P(sol) polarization free energy of solvation -85.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds