Wall clock time and date at job start Sat Apr 11 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47430 * 2 1 4 4 C 1.52989 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47265 * 180.02562 * 4 3 2 6 6 N 1.30303 * 126.33877 * 269.99679 * 5 4 3 7 7 N 1.28528 * 110.07710 * 179.76146 * 6 5 4 8 8 C 1.31287 * 109.85512 * 0.39377 * 7 6 5 9 9 S 1.76200 * 126.48026 * 179.87886 * 8 7 6 10 10 C 1.81005 * 100.00207 * 359.69092 * 9 8 7 11 11 H 1.09000 * 109.47264 * 54.99640 * 10 9 8 12 12 C 1.53001 * 109.46883 * 294.99852 * 10 9 8 13 13 C 1.50696 * 109.47234 * 174.99696 * 10 9 8 14 14 O 1.21280 * 120.00095 * 25.00309 * 13 10 9 15 15 N 1.34771 * 119.99966 * 204.99860 * 13 10 9 16 16 C 1.46496 * 120.00157 * 359.97438 * 15 13 10 17 17 C 1.46506 * 120.00084 * 180.02562 * 15 13 10 18 18 C 1.50699 * 109.46928 * 270.00021 * 17 15 13 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 15 20 20 C 1.37873 * 119.99865 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00518 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46948 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47174 * 120.00320 * 22 20 18 25 25 H 1.48497 * 109.47378 * 240.00235 * 22 20 18 26 26 N 1.36532 * 107.03279 * 359.61768 * 8 7 6 27 27 N 1.36601 * 127.14368 * 180.22355 * 26 8 7 28 28 H 1.09001 * 109.47062 * 60.00004 * 1 2 3 29 29 H 1.09000 * 109.47806 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47047 * 300.00338 * 1 2 3 31 31 H 1.08995 * 109.46635 * 239.99613 * 2 1 3 32 32 H 1.09000 * 109.46430 * 120.00409 * 2 1 3 33 33 H 1.08994 * 109.46900 * 59.99738 * 3 2 1 34 34 H 1.09001 * 109.46995 * 300.00038 * 3 2 1 35 35 H 1.09001 * 109.47225 * 59.99738 * 4 3 2 36 36 H 1.09001 * 109.47186 * 299.99887 * 4 3 2 37 37 H 1.09002 * 109.47083 * 59.99936 * 12 10 9 38 38 H 1.09007 * 109.46967 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.46998 * 299.99951 * 12 10 9 40 40 H 1.08995 * 109.47445 * 269.99904 * 16 15 13 41 41 H 1.09001 * 109.47057 * 30.00532 * 16 15 13 42 42 H 1.08999 * 109.47333 * 150.00092 * 16 15 13 43 43 H 1.09004 * 109.47073 * 29.99849 * 17 15 13 44 44 H 1.09000 * 109.47212 * 149.99932 * 17 15 13 45 45 H 0.96992 * 120.00316 * 179.97438 * 21 20 18 46 46 H 1.00900 * 111.00130 * 89.97558 * 27 26 8 47 47 H 1.00896 * 111.00190 * 213.93172 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8631 0.0000 6 7 4.3295 3.5917 -1.0493 7 7 4.7362 4.7564 -0.6889 8 6 4.7688 4.8316 0.6214 9 16 5.2617 6.2263 1.5788 10 6 5.6723 7.3883 0.2531 11 1 4.8172 7.4950 -0.4144 12 6 6.8719 6.8591 -0.5355 13 6 6.0148 8.7295 0.8488 14 8 6.4266 8.7999 1.9874 15 7 5.8637 9.8506 0.1163 16 6 5.3670 9.7655 -1.2592 17 6 6.1972 11.1544 0.6953 18 6 4.9787 11.7317 1.3682 19 1 4.0489 11.1822 1.3653 20 6 5.0510 12.9609 1.9885 21 7 6.1833 13.6299 1.9925 22 14 3.5403 13.6769 2.8220 23 1 2.4017 12.7348 2.6767 24 1 3.8249 13.8903 4.2638 25 1 3.1937 14.9745 2.1886 26 7 4.3430 3.6266 1.1019 27 7 4.2141 3.2597 2.4114 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9329 0.9286 -0.8908 36 1 3.9337 0.9284 0.8891 37 1 6.6241 5.8891 -0.9664 38 1 7.1189 7.5587 -1.3341 39 1 7.7270 6.7525 0.1320 40 1 6.2082 9.6507 -1.9428 41 1 4.7026 8.9065 -1.3531 42 1 4.8207 10.6760 -1.5053 43 1 6.9942 11.0330 1.4290 44 1 6.5298 11.8283 -0.0943 45 1 6.2341 14.4948 2.4286 46 1 3.2920 3.4770 2.7587 47 1 4.4258 2.2810 2.5352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079014500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:11 Heat of formation + Delta-G solvation = 56.370787 kcal Electronic energy + Delta-G solvation = -27163.681032 eV Core-core repulsion = 23316.949811 eV Total energy + Delta-G solvation = -3846.731221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.17415 -39.15389 -36.95240 -36.30831 -34.90815 -33.31455 -32.50287 -32.12920 -30.07578 -29.12577 -27.80795 -25.94753 -25.01585 -24.46372 -22.99545 -22.40313 -21.86746 -21.40304 -19.19591 -18.19307 -17.77914 -17.05154 -16.74408 -16.43061 -15.99050 -15.53865 -15.39769 -14.98151 -14.65073 -14.44343 -14.21109 -13.92797 -13.74233 -13.22278 -13.05605 -12.94767 -12.45618 -12.23603 -12.07560 -11.97653 -11.94366 -11.87257 -11.70602 -11.69029 -11.59467 -11.35929 -11.22024 -11.17515 -10.87597 -10.79311 -10.60996 -10.17092 -10.15902 -10.03086 -9.78481 -9.62261 -9.03553 -8.44429 -7.72154 -7.57418 -6.05148 -4.09881 0.98419 1.35504 1.96814 2.07534 2.53026 3.29631 3.30336 3.37970 3.42503 3.60312 3.85687 4.09777 4.31655 4.37304 4.44334 4.53478 4.71519 4.89220 4.94892 5.01191 5.03019 5.04056 5.19959 5.20543 5.28285 5.29762 5.39314 5.42620 5.58058 5.62095 5.67379 5.70123 5.78315 5.81338 5.92547 5.96053 6.07539 6.20548 6.32058 6.98044 7.08785 7.39896 7.47388 7.90713 8.20882 8.29187 8.38981 8.82429 8.98808 9.55098 11.03033 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002310 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.966502 B =12116.764382 C =12739.349744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.031 4.031 5 C 0.143 3.857 6 N -0.269 5.269 7 N -0.292 5.292 8 C 0.181 3.819 9 S 0.098 5.902 10 C -0.118 4.118 11 H 0.120 0.880 12 C -0.140 4.140 13 C 0.526 3.474 14 O -0.528 6.528 15 N -0.590 5.590 16 C 0.078 3.922 17 C 0.245 3.755 18 C -0.526 4.526 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.283 1.283 26 N -0.309 5.309 27 N -0.583 5.583 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.036 0.964 45 H 0.263 0.737 46 H 0.366 0.634 47 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 -27.678 -4.590 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.071 4.071 5 C -0.128 4.128 6 N -0.109 5.109 7 N -0.138 5.138 8 C -0.193 4.193 9 S 0.327 5.673 10 C -0.250 4.250 11 H 0.138 0.862 12 C -0.199 4.199 13 C 0.310 3.690 14 O -0.405 6.405 15 N -0.322 5.322 16 C -0.066 4.066 17 C 0.126 3.874 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.210 1.210 26 N -0.092 5.092 27 N -0.214 5.214 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.185 0.815 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.168 -26.342 -4.044 27.355 hybrid contribution -1.860 -0.739 0.225 2.014 sum -8.028 -27.082 -3.820 28.504 Atomic orbital electron populations 1.21772 0.95453 1.01847 1.02088 1.21513 0.96315 0.95813 1.02389 1.21638 0.93019 0.97792 1.03087 1.20067 0.96208 0.86070 1.04711 1.25415 1.05904 0.98243 0.83227 1.73933 1.14847 0.98774 1.23348 1.74820 1.20638 1.12541 1.05780 1.27277 1.04157 0.92650 0.95236 1.86527 1.79271 0.97930 1.03561 1.23771 1.04837 0.96166 1.00271 0.86221 1.21971 0.95431 1.02528 0.99950 1.19308 0.79607 0.84009 0.86126 1.90715 1.46203 1.86194 1.17416 1.48060 1.63010 1.07992 1.13116 1.21779 0.98711 1.02860 0.83266 1.19380 0.97190 0.76463 0.94346 1.21453 0.96743 1.03121 1.35206 0.92312 1.24936 0.96333 0.96825 0.96028 1.69938 1.25012 1.14227 1.44108 0.86433 0.82835 0.78771 0.79341 1.19766 1.20845 1.20958 1.44976 1.50631 1.11480 1.02129 1.59598 1.36638 1.27875 0.97328 0.92482 0.92507 0.92751 0.91411 0.91882 0.92290 0.90634 0.87718 0.90357 0.89976 0.90979 0.91293 0.93224 0.92146 0.90392 0.93592 0.94625 0.92734 0.81531 0.80875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.50 5.93 -26.73 -0.16 -0.66 16 3 C -0.12 -0.64 5.20 -26.74 -0.14 -0.78 16 4 C -0.03 -0.18 5.69 -27.89 -0.16 -0.34 16 5 C 0.14 1.53 7.38 -153.99 -1.14 0.40 16 6 N -0.27 -3.83 12.18 33.00 0.40 -3.43 16 7 N -0.29 -4.52 9.76 30.68 0.30 -4.22 16 8 C 0.18 2.61 7.88 -88.34 -0.70 1.91 16 9 S 0.10 1.57 21.02 -107.50 -2.26 -0.69 16 10 C -0.12 -1.95 2.02 -27.88 -0.06 -2.01 16 11 H 0.12 1.87 6.06 -51.92 -0.31 1.55 16 12 C -0.14 -2.04 8.97 37.16 0.33 -1.70 16 13 C 0.53 11.14 6.79 -10.99 -0.07 11.06 16 14 O -0.53 -13.29 15.72 5.56 0.09 -13.20 16 15 N -0.59 -12.63 2.86 -182.96 -0.52 -13.15 16 16 C 0.08 1.26 9.91 59.84 0.59 1.86 16 17 C 0.25 6.40 5.16 -5.19 -0.03 6.38 16 18 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 19 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 22 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 N -0.31 -3.44 3.81 -9.93 -0.04 -3.48 16 27 N -0.58 -4.38 10.41 60.35 0.63 -3.75 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.28 7.41 -51.93 -0.38 -0.10 16 37 H 0.08 1.18 5.92 -51.93 -0.31 0.87 16 38 H 0.07 0.96 7.66 -51.93 -0.40 0.56 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.69 8.01 -51.93 -0.42 0.28 16 41 H 0.06 0.85 5.85 -51.93 -0.30 0.55 16 42 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 43 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 44 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.37 2.07 9.21 -181.36 -1.67 0.40 16 47 H 0.37 1.60 8.27 -181.37 -1.50 0.10 16 LS Contribution 400.93 15.07 6.04 6.04 Total: -1.00 -35.79 400.93 -11.09 -46.88 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -9.87 Total: -4.29 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.57 Total: 2.18 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 1.51 Total: -53.82 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.26 Total: -0.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.79 -11.09 -46.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079014500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.246 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds