Wall clock time and date at job start Sat Apr 11 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47430 * 2 1 4 4 C 1.52989 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47265 * 180.02562 * 4 3 2 6 6 N 1.30303 * 126.33877 * 269.99679 * 5 4 3 7 7 N 1.28528 * 110.07710 * 179.76146 * 6 5 4 8 8 C 1.31287 * 109.85512 * 0.39377 * 7 6 5 9 9 S 1.76200 * 126.48026 * 179.87886 * 8 7 6 10 10 C 1.81005 * 100.00207 * 359.69092 * 9 8 7 11 11 H 1.09000 * 109.47264 * 54.99640 * 10 9 8 12 12 C 1.53001 * 109.46883 * 294.99852 * 10 9 8 13 13 C 1.50696 * 109.47234 * 174.99696 * 10 9 8 14 14 O 1.21280 * 120.00095 * 25.00309 * 13 10 9 15 15 N 1.34771 * 119.99966 * 204.99860 * 13 10 9 16 16 C 1.46496 * 120.00157 * 359.97438 * 15 13 10 17 17 C 1.46506 * 120.00084 * 180.02562 * 15 13 10 18 18 C 1.50699 * 109.46928 * 270.00021 * 17 15 13 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 15 20 20 C 1.37873 * 119.99865 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00518 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46948 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47174 * 120.00320 * 22 20 18 25 25 H 1.48497 * 109.47378 * 240.00235 * 22 20 18 26 26 N 1.36532 * 107.03279 * 359.61768 * 8 7 6 27 27 N 1.36601 * 127.14368 * 180.22355 * 26 8 7 28 28 H 1.09001 * 109.47062 * 60.00004 * 1 2 3 29 29 H 1.09000 * 109.47806 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47047 * 300.00338 * 1 2 3 31 31 H 1.08995 * 109.46635 * 239.99613 * 2 1 3 32 32 H 1.09000 * 109.46430 * 120.00409 * 2 1 3 33 33 H 1.08994 * 109.46900 * 59.99738 * 3 2 1 34 34 H 1.09001 * 109.46995 * 300.00038 * 3 2 1 35 35 H 1.09001 * 109.47225 * 59.99738 * 4 3 2 36 36 H 1.09001 * 109.47186 * 299.99887 * 4 3 2 37 37 H 1.09002 * 109.47083 * 59.99936 * 12 10 9 38 38 H 1.09007 * 109.46967 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.46998 * 299.99951 * 12 10 9 40 40 H 1.08995 * 109.47445 * 269.99904 * 16 15 13 41 41 H 1.09001 * 109.47057 * 30.00532 * 16 15 13 42 42 H 1.08999 * 109.47333 * 150.00092 * 16 15 13 43 43 H 1.09004 * 109.47073 * 29.99849 * 17 15 13 44 44 H 1.09000 * 109.47212 * 149.99932 * 17 15 13 45 45 H 0.96992 * 120.00316 * 179.97438 * 21 20 18 46 46 H 1.00900 * 111.00130 * 89.97558 * 27 26 8 47 47 H 1.00896 * 111.00190 * 213.93172 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8631 0.0000 6 7 4.3295 3.5917 -1.0493 7 7 4.7362 4.7564 -0.6889 8 6 4.7688 4.8316 0.6214 9 16 5.2617 6.2263 1.5788 10 6 5.6723 7.3883 0.2531 11 1 4.8172 7.4950 -0.4144 12 6 6.8719 6.8591 -0.5355 13 6 6.0148 8.7295 0.8488 14 8 6.4266 8.7999 1.9874 15 7 5.8637 9.8506 0.1163 16 6 5.3670 9.7655 -1.2592 17 6 6.1972 11.1544 0.6953 18 6 4.9787 11.7317 1.3682 19 1 4.0489 11.1822 1.3653 20 6 5.0510 12.9609 1.9885 21 7 6.1833 13.6299 1.9925 22 14 3.5403 13.6769 2.8220 23 1 2.4017 12.7348 2.6767 24 1 3.8249 13.8903 4.2638 25 1 3.1937 14.9745 2.1886 26 7 4.3430 3.6266 1.1019 27 7 4.2141 3.2597 2.4114 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9329 0.9286 -0.8908 36 1 3.9337 0.9284 0.8891 37 1 6.6241 5.8891 -0.9664 38 1 7.1189 7.5587 -1.3341 39 1 7.7270 6.7525 0.1320 40 1 6.2082 9.6507 -1.9428 41 1 4.7026 8.9065 -1.3531 42 1 4.8207 10.6760 -1.5053 43 1 6.9942 11.0330 1.4290 44 1 6.5298 11.8283 -0.0943 45 1 6.2341 14.4948 2.4286 46 1 3.2920 3.4770 2.7587 47 1 4.4258 2.2810 2.5352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079014500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:10 Heat of formation + Delta-G solvation = 33.907622 kcal Electronic energy + Delta-G solvation = -27164.655108 eV Core-core repulsion = 23316.949811 eV Total energy + Delta-G solvation = -3847.705297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.11945 -40.85326 -37.70784 -36.82027 -36.70617 -35.04283 -34.04754 -33.01367 -30.90049 -29.95688 -29.64554 -27.48896 -26.10978 -25.57992 -24.26685 -23.92193 -22.46683 -21.96896 -20.53130 -19.38511 -18.72515 -18.54612 -18.22142 -18.07328 -17.11202 -16.53348 -16.36810 -16.25961 -16.08837 -15.72730 -15.27673 -14.78084 -14.69497 -14.57640 -14.18780 -14.07089 -13.64959 -13.55659 -13.42271 -13.38315 -13.13417 -13.04133 -12.80273 -12.78260 -12.57468 -12.54303 -12.33700 -12.25889 -12.22461 -11.92309 -11.80182 -11.69118 -11.50477 -11.25516 -11.04615 -10.75051 -10.64587 -10.55295 -9.51693 -8.76315 -8.22937 -6.37171 -0.16900 0.43150 0.83683 1.13178 1.37061 1.39299 1.51144 1.54262 1.66884 2.20777 2.41368 2.98540 3.07080 3.41715 3.49159 3.72068 3.88892 3.90009 3.92016 4.04971 4.13922 4.35410 4.39429 4.47405 4.53492 4.59717 4.66962 4.68889 4.72153 4.77922 4.90503 4.93136 4.97132 4.97441 5.04681 5.13816 5.21257 5.24034 5.33668 5.44732 5.51676 5.64366 5.77827 6.04060 6.35580 6.56807 6.71597 7.17759 7.35618 7.40765 8.84585 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002310 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.966502 B =12116.764382 C =12739.349744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.110 4.110 4 C -0.029 4.029 5 C 0.165 3.835 6 N -0.309 5.309 7 N -0.310 5.310 8 C 0.166 3.834 9 S 0.075 5.925 10 C -0.102 4.102 11 H 0.132 0.868 12 C -0.131 4.131 13 C 0.521 3.479 14 O -0.577 6.577 15 N -0.596 5.596 16 C 0.072 3.928 17 C 0.259 3.741 18 C -0.542 4.542 19 H 0.053 0.947 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.967 3.033 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.269 1.269 26 N -0.304 5.304 27 N -0.585 5.585 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.004 0.996 44 H 0.031 0.969 45 H 0.268 0.732 46 H 0.379 0.621 47 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 -29.973 -4.836 31.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.149 4.149 4 C -0.069 4.069 5 C -0.107 4.107 6 N -0.149 5.149 7 N -0.155 5.155 8 C -0.210 4.210 9 S 0.303 5.697 10 C -0.234 4.234 11 H 0.150 0.850 12 C -0.190 4.190 13 C 0.307 3.693 14 O -0.458 6.458 15 N -0.327 5.327 16 C -0.070 4.070 17 C 0.138 3.862 18 C -0.581 4.581 19 H 0.071 0.929 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.194 1.194 26 N -0.085 5.085 27 N -0.221 5.221 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.022 0.978 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.199 0.801 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.776 -28.678 -4.334 30.028 hybrid contribution -1.382 -0.161 0.303 1.424 sum -9.158 -28.839 -4.031 30.526 Atomic orbital electron populations 1.21796 0.95909 1.02136 1.01613 1.21483 0.95850 0.94773 1.03391 1.21569 0.92457 0.98704 1.02210 1.20357 0.96433 0.83354 1.06754 1.26250 1.02951 0.99219 0.82252 1.73881 1.16977 0.99012 1.24989 1.74717 1.20941 1.13522 1.06344 1.26874 1.05754 0.93230 0.95092 1.86523 1.80242 0.99009 1.03902 1.23559 1.06010 0.93578 1.00295 0.85031 1.21927 0.94212 1.03018 0.99824 1.20003 0.78430 0.85405 0.85497 1.90681 1.48269 1.87166 1.19660 1.48044 1.62987 1.06573 1.15060 1.22063 1.00259 1.03887 0.80747 1.18873 0.95379 0.78673 0.93256 1.21695 0.97056 1.03526 1.35816 0.92884 1.25838 0.99479 0.97224 0.96542 1.70047 1.27034 1.14707 1.44797 0.85373 0.79008 0.78399 0.78067 1.19202 1.20676 1.19407 1.44981 1.49483 1.10494 1.03567 1.59643 1.37758 1.29521 0.95212 0.93383 0.91851 0.92863 0.91036 0.90230 0.92101 0.92694 0.86971 0.86995 0.89389 0.89538 0.91996 0.90390 0.89603 0.90676 0.97798 0.95134 0.92353 0.80078 0.78652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.91 71.98 0.71 -0.40 16 2 C -0.12 -0.63 5.93 30.59 0.18 -0.45 16 3 C -0.11 -0.95 5.20 30.59 0.16 -0.79 16 4 C -0.03 -0.26 5.69 29.84 0.17 -0.09 16 5 C 0.16 3.20 7.38 137.63 1.02 4.21 16 6 N -0.31 -8.43 12.18 -49.52 -0.60 -9.03 16 7 N -0.31 -9.31 9.76 -56.85 -0.55 -9.86 16 8 C 0.17 4.65 7.88 179.55 1.41 6.06 16 9 S 0.07 2.39 21.02 -56.49 -1.19 1.21 16 10 C -0.10 -3.35 2.02 29.85 0.06 -3.29 16 11 H 0.13 3.96 6.06 -2.39 -0.01 3.95 16 12 C -0.13 -3.72 8.97 71.98 0.65 -3.07 16 13 C 0.52 22.48 6.79 87.66 0.60 23.07 16 14 O -0.58 -30.24 15.72 -3.03 -0.05 -30.29 16 15 N -0.60 -25.84 2.86 -851.14 -2.43 -28.27 16 16 C 0.07 2.27 9.91 127.77 1.27 3.53 16 17 C 0.26 14.03 5.16 85.63 0.44 14.47 16 18 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 19 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 20 C 0.01 0.48 5.46 84.65 0.46 0.94 16 21 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 22 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 N -0.30 -6.22 3.81 -185.32 -0.71 -6.93 16 27 N -0.59 -7.44 10.41 37.02 0.39 -7.05 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 0.30 7.41 -2.39 -0.02 0.28 16 37 H 0.09 2.45 5.92 -2.39 -0.01 2.43 16 38 H 0.09 2.17 7.66 -2.38 -0.02 2.16 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 2.01 8.01 -2.39 -0.02 2.00 16 41 H 0.09 2.25 5.85 -2.39 -0.01 2.24 16 42 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 43 H 0.00 0.24 7.42 -2.38 -0.02 0.22 16 44 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 45 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.38 3.38 9.21 -210.56 -1.94 1.44 16 47 H 0.39 2.09 8.27 -210.56 -1.74 0.35 16 Total: -1.00 -80.43 400.93 1.85 -78.58 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -2.68 Total: 7.14 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 7.37 Total: 13.03 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -3.62 Total: -116.84 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.05 Total: -30.29 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.19 Total: 1.21 kcal Total: -80.43 1.85 -78.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079014500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.487 kcal (2) G-P(sol) polarization free energy of solvation -80.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds