Wall clock time and date at job start Sat Apr 11 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46832 * 2 1 4 4 C 1.53000 * 109.47308 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47025 * 179.97438 * 4 3 2 6 6 N 1.30290 * 126.34086 * 89.98185 * 5 4 3 7 7 N 1.28524 * 110.08135 * 179.97438 * 6 5 4 8 8 C 1.31284 * 109.85398 * 359.97438 * 7 6 5 9 9 S 1.76209 * 126.48497 * 179.74060 * 8 7 6 10 10 C 1.80998 * 99.99789 * 0.02562 * 9 8 7 11 11 C 1.50704 * 109.47289 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99615 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00135 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00050 * 0.02562 * 13 11 10 15 15 C 1.52999 * 109.47159 * 89.99797 * 14 13 11 16 16 C 1.46495 * 119.99694 * 180.02562 * 13 11 10 17 17 C 1.50701 * 109.47377 * 90.00050 * 16 13 11 18 18 H 1.07998 * 119.99857 * 0.02562 * 17 16 13 19 19 C 1.37876 * 119.99884 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99664 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00100 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47072 * 90.00363 * 21 19 17 23 23 H 1.48504 * 109.46995 * 209.99787 * 21 19 17 24 24 H 1.48498 * 109.47436 * 330.00183 * 21 19 17 25 25 N 1.36540 * 107.03385 * 359.97438 * 8 7 6 26 26 N 1.36593 * 127.14462 * 179.97438 * 25 8 7 27 27 H 1.08989 * 109.47271 * 60.00344 * 1 2 3 28 28 H 1.08997 * 109.46379 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47149 * 299.99565 * 1 2 3 30 30 H 1.08997 * 109.47291 * 240.00134 * 2 1 3 31 31 H 1.08997 * 109.47109 * 119.99400 * 2 1 3 32 32 H 1.09005 * 109.47467 * 59.99528 * 3 2 1 33 33 H 1.09005 * 109.47194 * 300.00102 * 3 2 1 34 34 H 1.09000 * 109.46785 * 59.99557 * 4 3 2 35 35 H 1.09000 * 109.46653 * 300.00026 * 4 3 2 36 36 H 1.08998 * 109.47424 * 300.00146 * 10 9 8 37 37 H 1.09005 * 109.47255 * 59.99890 * 10 9 8 38 38 H 1.09005 * 109.46974 * 209.99947 * 14 13 11 39 39 H 1.09003 * 109.47190 * 329.99242 * 14 13 11 40 40 H 1.09007 * 109.47045 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.46863 * 299.99785 * 15 14 13 42 42 H 1.08998 * 109.47087 * 59.99811 * 15 14 13 43 43 H 1.09002 * 109.47135 * 209.99903 * 16 13 11 44 44 H 1.09004 * 109.47160 * 329.99710 * 16 13 11 45 45 H 0.96998 * 119.99650 * 180.02562 * 20 19 17 46 46 H 1.00902 * 111.00484 * 90.02749 * 26 25 8 47 47 H 1.00900 * 111.00191 * 213.98563 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3287 3.5922 1.0492 7 7 4.7407 4.7551 0.6888 8 6 4.7699 4.8315 -0.6215 9 16 5.2586 6.2276 -1.5790 10 6 5.6627 7.3919 -0.2534 11 6 6.1196 8.6969 -0.8529 12 8 6.1669 8.8271 -2.0578 13 7 6.4747 9.7196 -0.0501 14 6 6.4170 9.5625 1.4053 15 6 7.7590 9.0327 1.9147 16 6 6.9183 10.9883 -0.6329 17 6 5.7289 11.8913 -0.8355 18 1 4.7414 11.5540 -0.5574 19 6 5.9017 13.1484 -1.3748 20 7 4.8637 13.9366 -1.5510 21 14 7.6101 13.7325 -1.8537 22 1 7.8826 13.3610 -3.2654 23 1 7.6881 15.2082 -1.7064 24 1 8.6178 13.0929 -0.9702 25 7 4.3450 3.6261 -1.1020 26 7 4.2170 3.2589 -2.4114 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6766 1.9565 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9287 -0.8891 35 1 3.9329 0.9290 0.8909 36 1 4.7790 7.5637 0.3613 37 1 6.4596 6.9773 0.3640 38 1 6.2085 10.5277 1.8669 39 1 5.6265 8.8579 1.6637 40 1 7.7159 8.9154 2.9975 41 1 7.9673 8.0676 1.4530 42 1 8.5494 9.7373 1.6563 43 1 7.6287 11.4686 0.0400 44 1 7.3984 10.7989 -1.5930 45 1 4.9852 14.8208 -1.9308 46 1 5.0713 2.8477 -2.7568 47 1 3.4372 2.6310 -2.5363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079016546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:13 Heat of formation + Delta-G solvation = 53.640915 kcal Electronic energy + Delta-G solvation = -26849.892369 eV Core-core repulsion = 23003.042772 eV Total energy + Delta-G solvation = -3846.849597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.18879 -39.21613 -36.95971 -36.29946 -35.50030 -32.78424 -32.47600 -30.61750 -30.15574 -29.96471 -29.07135 -27.20403 -24.98574 -23.03107 -22.99611 -22.36506 -21.83211 -21.43117 -19.09314 -18.22870 -17.71112 -17.11101 -16.92761 -16.62219 -15.96726 -15.59888 -15.56085 -15.06212 -14.92762 -14.33409 -14.06777 -13.89024 -13.64828 -13.50098 -13.33986 -12.89445 -12.74690 -12.39050 -12.18557 -12.14342 -12.01926 -11.91589 -11.79424 -11.67809 -11.45792 -11.38624 -11.15111 -10.97096 -10.95726 -10.73701 -10.52375 -10.32797 -10.16918 -10.09282 -9.82712 -9.56141 -9.24572 -8.58665 -7.83107 -7.59132 -6.08236 -4.07417 0.94235 1.33767 1.94046 2.07014 2.51869 3.15315 3.29634 3.35432 3.37332 3.59493 3.74007 4.06784 4.32312 4.39087 4.39728 4.55447 4.73185 4.78418 4.96628 5.01657 5.05208 5.13901 5.21530 5.24795 5.25732 5.30028 5.40428 5.43409 5.49873 5.56599 5.60701 5.64766 5.72290 5.73252 5.81494 6.02116 6.05267 6.15526 6.41671 6.66089 6.90541 7.06819 7.25507 7.59507 8.10922 8.36761 8.44873 8.77598 8.95764 9.51279 11.05023 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021732 B = 0.002126 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.096440 B =13168.951945 C =13475.672829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.118 4.118 4 C -0.030 4.030 5 C 0.144 3.856 6 N -0.268 5.268 7 N -0.295 5.295 8 C 0.175 3.825 9 S 0.107 5.893 10 C -0.151 4.151 11 C 0.527 3.473 12 O -0.528 6.528 13 N -0.582 5.582 14 C 0.102 3.898 15 C -0.170 4.170 16 C 0.217 3.783 17 C -0.530 4.530 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.266 1.266 25 N -0.309 5.309 26 N -0.583 5.583 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.038 0.962 45 H 0.265 0.735 46 H 0.366 0.634 47 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 -29.048 3.488 29.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.070 4.070 5 C -0.127 4.127 6 N -0.108 5.108 7 N -0.140 5.140 8 C -0.199 4.199 9 S 0.335 5.665 10 C -0.303 4.303 11 C 0.311 3.689 12 O -0.405 6.405 13 N -0.314 5.314 14 C -0.022 4.022 15 C -0.228 4.228 16 C 0.097 3.903 17 C -0.568 4.568 18 H 0.094 0.906 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 N -0.092 5.092 26 N -0.214 5.214 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.184 0.816 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.831 -27.431 2.913 27.646 hybrid contribution 0.662 -1.130 0.033 1.310 sum -1.169 -28.561 2.946 28.737 Atomic orbital electron populations 1.21771 0.95413 1.01816 1.02170 1.21514 0.96370 0.95824 1.02301 1.21664 0.92832 0.97784 1.03383 1.20071 0.96449 0.85939 1.04573 1.25441 1.06195 0.97876 0.83191 1.73919 1.14645 0.98943 1.23343 1.74853 1.20597 1.12738 1.05828 1.27382 1.04695 0.92503 0.95283 1.86591 1.79794 0.97251 1.02857 1.23930 1.07428 0.97063 1.01850 1.19321 0.78713 0.83819 0.87041 1.90718 1.53721 1.82187 1.13907 1.47839 1.64287 1.13575 1.05674 1.21545 0.96995 1.02721 0.80915 1.22224 0.98469 1.01224 1.00890 1.19717 0.96221 0.79961 0.94445 1.21314 0.94446 0.98628 1.42461 0.90630 1.24853 0.96795 0.96429 0.94908 1.69898 1.29687 1.09215 1.44609 0.86857 0.84999 0.78047 0.79824 1.19884 1.21062 1.19054 1.44970 1.51629 1.10485 1.02119 1.59582 1.11676 1.52812 0.97374 0.92642 0.92554 0.92477 0.91914 0.91504 0.90588 0.91883 0.90544 0.87754 0.86029 0.86293 0.89346 0.91016 0.91717 0.92943 0.92150 0.94921 0.94397 0.92542 0.81573 0.80770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.51 5.93 -26.73 -0.16 -0.67 16 3 C -0.12 -0.66 5.20 -26.73 -0.14 -0.80 16 4 C -0.03 -0.18 5.52 -27.88 -0.15 -0.34 16 5 C 0.14 1.54 7.38 -154.00 -1.14 0.40 16 6 N -0.27 -3.85 12.17 32.99 0.40 -3.45 16 7 N -0.29 -4.60 11.60 30.68 0.36 -4.24 16 8 C 0.18 2.50 8.20 -88.34 -0.72 1.77 16 9 S 0.11 1.64 21.40 -107.50 -2.30 -0.66 16 10 C -0.15 -2.37 4.27 36.01 0.15 -2.22 16 11 C 0.53 10.67 7.69 -10.98 -0.08 10.59 16 12 O -0.53 -12.73 15.44 5.55 0.09 -12.64 16 13 N -0.58 -11.84 2.46 -175.06 -0.43 -12.27 16 14 C 0.10 1.60 5.93 -4.04 -0.02 1.58 16 15 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 16 C 0.22 5.24 4.23 -5.20 -0.02 5.22 16 17 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 18 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 21 Si 0.88 21.49 27.47 -169.99 -4.67 16.83 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 25 N -0.31 -3.40 3.81 -9.93 -0.04 -3.43 16 26 N -0.58 -4.25 10.41 60.35 0.63 -3.62 16 27 H 0.05 0.26 8.14 -51.94 -0.42 -0.17 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.12 1.83 7.40 -51.92 -0.38 1.45 16 37 H 0.12 1.65 7.19 -51.91 -0.37 1.27 16 38 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 39 H 0.07 0.99 6.44 -51.93 -0.33 0.65 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.65 7.22 -51.93 -0.38 0.28 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 44 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.37 1.84 9.21 -181.37 -1.67 0.17 16 47 H 0.37 1.63 8.85 -181.37 -1.60 0.03 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -36.73 403.66 -11.22 -47.95 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -10.13 Total: -3.61 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.98 Total: -0.08 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 1.69 Total: -53.86 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.30 Total: -0.66 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.73 -11.22 -47.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079016546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.589 kcal (2) G-P(sol) polarization free energy of solvation -36.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds