Wall clock time and date at job start Sat Apr 11 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46832 * 2 1 4 4 C 1.53000 * 109.47308 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47025 * 179.97438 * 4 3 2 6 6 N 1.30290 * 126.34086 * 89.98185 * 5 4 3 7 7 N 1.28524 * 110.08135 * 179.97438 * 6 5 4 8 8 C 1.31284 * 109.85398 * 359.97438 * 7 6 5 9 9 S 1.76209 * 126.48497 * 179.74060 * 8 7 6 10 10 C 1.80998 * 99.99789 * 0.02562 * 9 8 7 11 11 C 1.50704 * 109.47289 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99615 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00135 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00050 * 0.02562 * 13 11 10 15 15 C 1.52999 * 109.47159 * 89.99797 * 14 13 11 16 16 C 1.46495 * 119.99694 * 180.02562 * 13 11 10 17 17 C 1.50701 * 109.47377 * 90.00050 * 16 13 11 18 18 H 1.07998 * 119.99857 * 0.02562 * 17 16 13 19 19 C 1.37876 * 119.99884 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99664 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00100 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47072 * 90.00363 * 21 19 17 23 23 H 1.48504 * 109.46995 * 209.99787 * 21 19 17 24 24 H 1.48498 * 109.47436 * 330.00183 * 21 19 17 25 25 N 1.36540 * 107.03385 * 359.97438 * 8 7 6 26 26 N 1.36593 * 127.14462 * 179.97438 * 25 8 7 27 27 H 1.08989 * 109.47271 * 60.00344 * 1 2 3 28 28 H 1.08997 * 109.46379 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47149 * 299.99565 * 1 2 3 30 30 H 1.08997 * 109.47291 * 240.00134 * 2 1 3 31 31 H 1.08997 * 109.47109 * 119.99400 * 2 1 3 32 32 H 1.09005 * 109.47467 * 59.99528 * 3 2 1 33 33 H 1.09005 * 109.47194 * 300.00102 * 3 2 1 34 34 H 1.09000 * 109.46785 * 59.99557 * 4 3 2 35 35 H 1.09000 * 109.46653 * 300.00026 * 4 3 2 36 36 H 1.08998 * 109.47424 * 300.00146 * 10 9 8 37 37 H 1.09005 * 109.47255 * 59.99890 * 10 9 8 38 38 H 1.09005 * 109.46974 * 209.99947 * 14 13 11 39 39 H 1.09003 * 109.47190 * 329.99242 * 14 13 11 40 40 H 1.09007 * 109.47045 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.46863 * 299.99785 * 15 14 13 42 42 H 1.08998 * 109.47087 * 59.99811 * 15 14 13 43 43 H 1.09002 * 109.47135 * 209.99903 * 16 13 11 44 44 H 1.09004 * 109.47160 * 329.99710 * 16 13 11 45 45 H 0.96998 * 119.99650 * 180.02562 * 20 19 17 46 46 H 1.00902 * 111.00484 * 90.02749 * 26 25 8 47 47 H 1.00900 * 111.00191 * 213.98563 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3287 3.5922 1.0492 7 7 4.7407 4.7551 0.6888 8 6 4.7699 4.8315 -0.6215 9 16 5.2586 6.2276 -1.5790 10 6 5.6627 7.3919 -0.2534 11 6 6.1196 8.6969 -0.8529 12 8 6.1669 8.8271 -2.0578 13 7 6.4747 9.7196 -0.0501 14 6 6.4170 9.5625 1.4053 15 6 7.7590 9.0327 1.9147 16 6 6.9183 10.9883 -0.6329 17 6 5.7289 11.8913 -0.8355 18 1 4.7414 11.5540 -0.5574 19 6 5.9017 13.1484 -1.3748 20 7 4.8637 13.9366 -1.5510 21 14 7.6101 13.7325 -1.8537 22 1 7.8826 13.3610 -3.2654 23 1 7.6881 15.2082 -1.7064 24 1 8.6178 13.0929 -0.9702 25 7 4.3450 3.6261 -1.1020 26 7 4.2170 3.2589 -2.4114 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6766 1.9565 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9287 -0.8891 35 1 3.9329 0.9290 0.8909 36 1 4.7790 7.5637 0.3613 37 1 6.4596 6.9773 0.3640 38 1 6.2085 10.5277 1.8669 39 1 5.6265 8.8579 1.6637 40 1 7.7159 8.9154 2.9975 41 1 7.9673 8.0676 1.4530 42 1 8.5494 9.7373 1.6563 43 1 7.6287 11.4686 0.0400 44 1 7.3984 10.7989 -1.5930 45 1 4.9852 14.8208 -1.9308 46 1 5.0713 2.8477 -2.7568 47 1 3.4372 2.6310 -2.5363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079016546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:13 Heat of formation + Delta-G solvation = 29.707980 kcal Electronic energy + Delta-G solvation = -26850.930179 eV Core-core repulsion = 23003.042772 eV Total energy + Delta-G solvation = -3847.887407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.12570 -40.84018 -37.70894 -37.12415 -36.80760 -34.89110 -33.14593 -32.25823 -31.31237 -30.89490 -29.88480 -28.99236 -25.56997 -24.52867 -24.19552 -23.89188 -22.45619 -21.97849 -20.36977 -19.40926 -19.09498 -18.46226 -18.17626 -18.11146 -17.15132 -16.71654 -16.38400 -16.32325 -15.97368 -15.73879 -15.05816 -14.81222 -14.76889 -14.72172 -14.51485 -14.17270 -14.00446 -13.69863 -13.38899 -13.35329 -13.21512 -13.09842 -12.62719 -12.57654 -12.41586 -12.34396 -12.27308 -12.05866 -11.99569 -11.91614 -11.86619 -11.73534 -11.50209 -11.41199 -11.04494 -10.92656 -10.81752 -10.57767 -9.52338 -8.74796 -8.32702 -6.38198 -0.17243 0.42438 0.88125 1.12146 1.34302 1.38301 1.46534 1.53467 1.56904 2.20581 2.32134 2.98137 3.01352 3.38620 3.46658 3.89210 3.90354 3.93258 4.04544 4.05480 4.15536 4.27035 4.36850 4.39016 4.49295 4.54235 4.60380 4.67619 4.76279 4.78032 4.87989 4.91301 4.96933 4.98537 5.01087 5.05809 5.25307 5.34818 5.36949 5.45907 5.45974 5.57022 5.64328 6.22117 6.34872 6.52538 6.63543 7.12738 7.28388 7.39140 8.84161 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021732 B = 0.002126 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.096440 B =13168.951945 C =13475.672829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C -0.112 4.112 4 C -0.028 4.028 5 C 0.165 3.835 6 N -0.310 5.310 7 N -0.317 5.317 8 C 0.161 3.839 9 S 0.091 5.909 10 C -0.135 4.135 11 C 0.520 3.480 12 O -0.574 6.574 13 N -0.589 5.589 14 C 0.095 3.905 15 C -0.161 4.161 16 C 0.226 3.774 17 C -0.537 4.537 18 H 0.029 0.971 19 C 0.011 3.989 20 N -0.944 5.944 21 Si 0.948 3.052 22 H -0.275 1.275 23 H -0.276 1.276 24 H -0.236 1.236 25 N -0.304 5.304 26 N -0.585 5.585 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.142 0.858 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.024 0.976 45 H 0.268 0.732 46 H 0.381 0.619 47 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 -31.684 3.853 31.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.068 4.068 5 C -0.107 4.107 6 N -0.150 5.150 7 N -0.163 5.163 8 C -0.214 4.214 9 S 0.318 5.682 10 C -0.286 4.286 11 C 0.307 3.693 12 O -0.455 6.455 13 N -0.319 5.319 14 C -0.027 4.027 15 C -0.219 4.219 16 C 0.104 3.896 17 C -0.576 4.576 18 H 0.047 0.953 19 C -0.187 4.187 20 N -0.584 5.584 21 Si 0.770 3.230 22 H -0.201 1.201 23 H -0.201 1.201 24 H -0.159 1.159 25 N -0.085 5.085 26 N -0.222 5.222 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.160 0.840 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.202 0.798 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.314 -30.119 3.328 30.304 hybrid contribution 0.012 -0.446 -0.085 0.454 sum -0.301 -30.565 3.243 30.738 Atomic orbital electron populations 1.21799 0.95946 1.02127 1.01625 1.21482 0.95834 0.94710 1.03396 1.21600 0.92452 0.98746 1.02342 1.20353 0.96497 0.83252 1.06695 1.26275 1.03352 0.98816 0.82253 1.73855 1.16823 0.99232 1.25092 1.74745 1.21164 1.13767 1.06599 1.27070 1.06107 0.93160 0.95104 1.86585 1.80628 0.97987 1.03019 1.23718 1.08211 0.94822 1.01865 1.19987 0.77688 0.85096 0.86541 1.90685 1.55530 1.83319 1.15974 1.47926 1.63924 1.12367 1.07704 1.21846 0.99699 1.03124 0.78070 1.22153 0.96037 1.01054 1.02626 1.19391 0.94541 0.81063 0.94627 1.21541 0.94126 0.99688 1.42211 0.95265 1.25857 1.01622 0.96536 0.94729 1.70055 1.32532 1.09890 1.45965 0.85719 0.79731 0.77941 0.79596 1.20090 1.20118 1.15932 1.44979 1.50509 1.09500 1.03558 1.59624 1.13397 1.53936 0.95199 0.92811 0.91822 0.93470 0.90116 0.91074 0.92815 0.91863 0.87054 0.86962 0.85411 0.84028 0.90224 0.89065 0.88840 0.92273 0.92796 0.92812 0.95803 0.92278 0.79810 0.78750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.12 -0.66 5.93 30.60 0.18 -0.48 16 3 C -0.11 -1.03 5.20 30.59 0.16 -0.88 16 4 C -0.03 -0.26 5.52 29.85 0.16 -0.09 16 5 C 0.16 3.23 7.38 137.63 1.02 4.25 16 6 N -0.31 -8.65 12.17 -49.53 -0.60 -9.25 16 7 N -0.32 -9.72 11.60 -56.85 -0.66 -10.38 16 8 C 0.16 4.47 8.20 179.55 1.47 5.94 16 9 S 0.09 2.76 21.40 -56.49 -1.21 1.55 16 10 C -0.13 -4.19 4.27 71.24 0.30 -3.89 16 11 C 0.52 21.31 7.69 87.66 0.67 21.99 16 12 O -0.57 -28.46 15.44 -3.04 -0.05 -28.51 16 13 N -0.59 -23.97 2.46 -826.15 -2.03 -25.99 16 14 C 0.09 2.87 5.93 86.38 0.51 3.39 16 15 C -0.16 -3.75 10.24 71.98 0.74 -3.01 16 16 C 0.23 10.94 4.23 85.63 0.36 11.30 16 17 C -0.54 -31.68 9.94 25.60 0.25 -31.43 16 18 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 19 C 0.01 0.63 5.47 84.65 0.46 1.09 16 20 N -0.94 -60.04 13.96 21.45 0.30 -59.74 16 21 Si 0.95 44.39 27.47 68.60 1.88 46.28 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 25 N -0.30 -6.19 3.81 -185.32 -0.71 -6.90 16 26 N -0.59 -7.22 10.41 37.02 0.39 -6.83 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.13 3.81 7.40 -2.40 -0.02 3.79 16 37 H 0.14 3.73 7.19 -2.39 -0.02 3.71 16 38 H 0.08 2.55 8.07 -2.38 -0.02 2.53 16 39 H 0.09 2.39 6.44 -2.39 -0.02 2.38 16 40 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 2.38 7.13 -2.39 -0.02 2.36 16 44 H 0.02 1.23 6.85 -2.39 -0.02 1.21 16 45 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 46 H 0.38 2.85 9.21 -210.56 -1.94 0.91 16 47 H 0.39 2.26 8.85 -210.56 -1.86 0.40 16 Total: -1.00 -83.97 403.66 1.47 -82.50 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -2.86 Total: 9.56 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 7.01 Total: 7.70 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -3.31 Total: -119.09 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.05 Total: -28.51 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.21 Total: 1.55 kcal Total: -83.97 1.47 -82.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079016546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.209 kcal (2) G-P(sol) polarization free energy of solvation -83.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds