Wall clock time and date at job start Sat Apr 11 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30586 * 125.42757 * 2 1 4 4 N 1.40419 * 107.01308 * 180.02562 * 3 2 1 5 5 H 0.96999 * 126.83754 * 179.97438 * 4 3 2 6 6 C 1.35070 * 106.33110 * 0.02562 * 4 3 2 7 7 S 1.76204 * 126.09035 * 180.02562 * 6 4 3 8 8 C 1.80998 * 99.99963 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47041 * 179.97438 * 8 7 6 10 10 O 1.21287 * 120.00054 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00185 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99671 * 0.02562 * 11 9 8 13 13 C 1.50696 * 109.47023 * 90.00235 * 12 11 9 14 14 H 1.07992 * 120.00201 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99795 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99979 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46974 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47312 * 120.00058 * 17 15 13 20 20 H 1.48504 * 109.47343 * 240.00356 * 17 15 13 21 21 C 1.46494 * 119.99903 * 180.02562 * 11 9 8 22 22 C 1.53000 * 109.47328 * 90.00049 * 21 11 9 23 23 C 1.53002 * 109.47293 * 179.97438 * 22 21 11 24 24 N 1.46903 * 109.47150 * 180.02562 * 23 22 21 25 25 C 1.46898 * 110.99924 * 170.00303 * 24 23 22 26 26 C 1.46902 * 110.99521 * 293.95127 * 24 23 22 27 27 N 1.31654 * 107.82630 * 359.97438 * 6 4 3 28 28 H 1.09002 * 109.47411 * 269.97403 * 1 2 3 29 29 H 1.08999 * 109.47323 * 29.98282 * 1 2 3 30 30 H 1.09012 * 109.46929 * 149.98070 * 1 2 3 31 31 H 1.08997 * 109.47210 * 300.00117 * 8 7 6 32 32 H 1.08995 * 109.46992 * 60.00149 * 8 7 6 33 33 H 1.09007 * 109.46676 * 210.00038 * 12 11 9 34 34 H 1.09000 * 109.47141 * 329.99855 * 12 11 9 35 35 H 0.97004 * 119.99763 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.46806 * 209.99772 * 21 11 9 37 37 H 1.08993 * 109.47274 * 329.99892 * 21 11 9 38 38 H 1.08997 * 109.46970 * 300.00090 * 22 21 11 39 39 H 1.09006 * 109.47258 * 59.99602 * 22 21 11 40 40 H 1.09003 * 109.46989 * 299.99814 * 23 22 21 41 41 H 1.08997 * 109.47034 * 59.99475 * 23 22 21 42 42 H 1.09001 * 109.47554 * 59.99263 * 25 24 23 43 43 H 1.08997 * 109.47327 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.46771 * 299.99680 * 25 24 23 45 45 H 1.08998 * 109.47267 * 60.00225 * 26 24 23 46 46 H 1.09002 * 109.46912 * 180.02562 * 26 24 23 47 47 H 1.08997 * 109.47201 * 299.99958 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0641 0.0000 4 7 3.5963 0.6205 -0.0006 5 1 4.3933 1.1734 -0.0011 6 6 3.5472 -0.7293 -0.0015 7 16 4.9324 -1.8183 -0.0019 8 6 4.0778 -3.4139 -0.0024 9 6 5.0931 -4.5275 -0.0034 10 8 6.2779 -4.2680 -0.0034 11 7 4.6846 -5.8119 -0.0044 12 6 3.2535 -6.1253 -0.0051 13 6 2.7633 -6.2319 -1.4261 14 1 3.4490 -6.0808 -2.2466 15 6 1.4393 -6.5223 -1.6786 16 7 0.6042 -6.7058 -0.6794 17 14 0.8315 -6.6536 -3.4401 18 1 1.9596 -6.4042 -4.3729 19 1 0.2857 -8.0145 -3.6752 20 1 -0.2343 -5.6459 -3.6724 21 6 5.6717 -6.8944 -0.0049 22 6 6.0149 -7.2723 1.4374 23 6 7.0453 -8.4033 1.4370 24 7 7.3743 -8.7666 2.8218 25 6 8.1740 -9.9980 2.8672 26 6 8.0651 -7.6648 3.5050 27 7 2.2800 -1.0865 -0.0009 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5142 31 1 3.4533 -3.4918 0.8876 32 1 3.4533 -3.4912 -0.8923 33 1 3.0889 -7.0729 0.5081 34 1 2.7080 -5.3341 0.5091 35 1 -0.3272 -6.9104 -0.8571 36 1 5.2589 -7.7622 -0.5194 37 1 6.5742 -6.5630 -0.5182 38 1 6.4275 -6.4046 1.9520 39 1 5.1122 -7.6038 1.9508 40 1 6.6321 -9.2710 0.9225 41 1 7.9479 -8.0723 0.9234 42 1 9.1019 -9.8493 2.3150 43 1 8.4040 -10.2438 3.9039 44 1 7.6098 -10.8144 2.4164 45 1 7.4218 -6.7850 3.5179 46 1 8.2975 -7.9604 4.5281 47 1 8.9891 -7.4316 2.9759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081292757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:16 Heat of formation + Delta-G solvation = 49.818752 kcal Electronic energy + Delta-G solvation = -27299.883682 eV Core-core repulsion = 23452.868343 eV Total energy + Delta-G solvation = -3847.015339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.86104 -39.31776 -37.60969 -35.33127 -33.23682 -32.99980 -31.90358 -31.59016 -29.38355 -28.28294 -27.62833 -27.43559 -25.64832 -23.23089 -23.05461 -22.47275 -20.69527 -20.47431 -19.11132 -18.17849 -16.72483 -16.54437 -16.39490 -15.81346 -15.73285 -15.40563 -15.13021 -14.79717 -14.56351 -14.38264 -14.02884 -13.67186 -13.49104 -13.07128 -12.83953 -12.76084 -12.41347 -12.40452 -12.28081 -12.04055 -11.99547 -11.81204 -11.71304 -11.46801 -11.33751 -11.22339 -10.90924 -10.84495 -10.56110 -10.30145 -10.20436 -10.11636 -10.00644 -9.92663 -9.77923 -9.37233 -8.59091 -8.37208 -7.89975 -7.66943 -6.21105 -4.29072 1.05773 1.50041 2.09400 2.86691 2.89593 3.11987 3.21311 3.30464 3.34061 3.71809 4.04580 4.31505 4.47253 4.69174 4.98888 5.11229 5.12976 5.16231 5.25238 5.35083 5.50584 5.54002 5.57721 5.61033 5.64500 5.65557 5.73775 5.77250 5.81863 5.86134 5.96667 6.00409 6.11010 6.19703 6.40869 6.48489 6.54928 6.68363 6.86963 7.01225 7.03737 7.11535 7.38901 7.72330 7.99306 8.03157 8.13463 8.64665 8.82621 9.39434 10.85829 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007955 B = 0.003565 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.860710 B = 7853.112151 C =10561.650096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.235 3.765 3 N -0.320 5.320 4 N -0.470 5.470 5 H 0.441 0.559 6 C 0.253 3.747 7 S 0.062 5.938 8 C -0.125 4.125 9 C 0.534 3.466 10 O -0.565 6.565 11 N -0.582 5.582 12 C 0.234 3.766 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.123 3.877 22 C -0.130 4.130 23 C 0.059 3.941 24 N -0.548 5.548 25 C 0.025 3.975 26 C 0.022 3.978 27 N -0.530 5.530 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.099 4.550 4.962 10.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.049 4.049 3 N -0.152 5.152 4 N -0.191 5.191 5 H 0.287 0.713 6 C -0.133 4.133 7 S 0.288 5.712 8 C -0.276 4.276 9 C 0.319 3.681 10 O -0.447 6.447 11 N -0.311 5.311 12 C 0.114 3.886 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.001 4.001 22 C -0.169 4.169 23 C -0.069 4.069 24 N -0.272 5.272 25 C -0.123 4.123 26 C -0.126 4.126 27 N -0.263 5.263 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.725 5.124 5.255 11.402 hybrid contribution -0.526 -0.026 -1.382 1.479 sum 8.199 5.097 3.873 10.403 Atomic orbital electron populations 1.20132 0.83724 1.04241 1.03848 1.24376 0.98405 0.85512 0.96601 1.77819 0.86501 1.22338 1.28511 1.47776 1.07791 1.04601 1.58910 0.71256 1.26868 0.99264 0.87829 0.99321 1.86056 0.97375 0.96295 1.91482 1.23780 1.01748 0.91363 1.10699 1.19457 0.87953 0.83916 0.76730 1.90641 1.17360 1.83601 1.53059 1.48092 1.09892 1.03694 1.69440 1.19565 0.73171 0.97986 0.97878 1.21463 0.94643 1.49946 0.92056 0.91992 1.24905 0.96535 0.94595 0.97401 1.69925 1.04651 1.47042 1.30770 0.86491 0.78966 0.77810 0.84538 1.19684 1.20842 1.20733 1.21258 0.92597 0.90420 0.95810 1.21950 0.99335 0.97620 0.97949 1.22075 0.97879 0.98805 0.88180 1.61972 1.44453 1.04208 1.16524 1.22369 0.95679 0.92658 1.01627 1.22428 0.96966 0.94795 0.98424 1.71099 0.98401 1.30551 1.26243 0.89741 0.90129 0.89075 0.85781 0.84331 0.94114 0.94112 0.92485 0.90004 0.90973 0.91800 0.90725 0.90565 0.94799 0.95905 0.91617 0.91331 0.90842 0.91767 0.95779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.51 36.01 0.38 -0.33 16 2 C 0.24 3.71 8.13 -156.87 -1.28 2.43 16 3 N -0.32 -4.90 12.78 32.42 0.41 -4.49 16 4 N -0.47 -6.46 7.47 30.45 0.23 -6.23 16 5 H 0.44 4.43 8.96 -182.36 -1.63 2.80 16 6 C 0.25 3.99 8.31 -89.38 -0.74 3.25 16 7 S 0.06 0.95 21.45 -107.50 -2.31 -1.35 16 8 C -0.12 -2.24 4.25 36.01 0.15 -2.08 16 9 C 0.53 10.37 7.69 -10.98 -0.08 10.29 16 10 O -0.56 -11.61 15.44 5.55 0.09 -11.52 16 11 N -0.58 -11.41 2.46 -175.06 -0.43 -11.84 16 12 C 0.23 5.24 4.97 -5.19 -0.03 5.21 16 13 C -0.54 -13.51 9.28 -34.44 -0.32 -13.83 16 14 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 17 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 C 0.12 2.10 5.41 -4.04 -0.02 2.08 16 22 C -0.13 -1.96 5.46 -26.73 -0.15 -2.11 16 23 C 0.06 0.76 4.96 -3.82 -0.02 0.75 16 24 N -0.55 -6.85 5.02 -251.26 -1.26 -8.11 16 25 C 0.03 0.25 9.57 60.06 0.57 0.83 16 26 C 0.02 0.25 9.32 60.07 0.56 0.81 16 27 N -0.53 -9.32 10.58 -10.85 -0.11 -9.43 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.10 8.14 -51.92 -0.42 0.67 16 31 H 0.12 2.21 7.40 -51.92 -0.38 1.82 16 32 H 0.14 2.72 8.00 -51.92 -0.42 2.30 16 33 H 0.04 0.96 8.07 -51.92 -0.42 0.54 16 34 H 0.04 0.95 6.44 -51.93 -0.33 0.62 16 35 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.08 1.38 8.07 -51.93 -0.42 0.97 16 37 H 0.07 1.24 7.42 -51.93 -0.39 0.85 16 38 H 0.06 1.02 6.55 -51.93 -0.34 0.68 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 41 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 45 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 46 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 47 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 405.56 15.07 6.11 6.11 Total: -1.00 -30.11 405.56 -11.48 -41.59 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.86 Total: 4.16 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.07 Total: 8.98 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -0.43 Total: -63.15 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.31 Total: -1.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.11 -11.48 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081292757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.405 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds