Wall clock time and date at job start Sat Apr 11 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30586 * 125.42757 * 2 1 4 4 N 1.40419 * 107.01308 * 180.02562 * 3 2 1 5 5 H 0.96999 * 126.83754 * 179.97438 * 4 3 2 6 6 C 1.35070 * 106.33110 * 0.02562 * 4 3 2 7 7 S 1.76204 * 126.09035 * 180.02562 * 6 4 3 8 8 C 1.80998 * 99.99963 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47041 * 179.97438 * 8 7 6 10 10 O 1.21287 * 120.00054 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00185 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99671 * 0.02562 * 11 9 8 13 13 C 1.50696 * 109.47023 * 90.00235 * 12 11 9 14 14 H 1.07992 * 120.00201 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99795 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99979 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46974 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47312 * 120.00058 * 17 15 13 20 20 H 1.48504 * 109.47343 * 240.00356 * 17 15 13 21 21 C 1.46494 * 119.99903 * 180.02562 * 11 9 8 22 22 C 1.53000 * 109.47328 * 90.00049 * 21 11 9 23 23 C 1.53002 * 109.47293 * 179.97438 * 22 21 11 24 24 N 1.46903 * 109.47150 * 180.02562 * 23 22 21 25 25 C 1.46898 * 110.99924 * 170.00303 * 24 23 22 26 26 C 1.46902 * 110.99521 * 293.95127 * 24 23 22 27 27 N 1.31654 * 107.82630 * 359.97438 * 6 4 3 28 28 H 1.09002 * 109.47411 * 269.97403 * 1 2 3 29 29 H 1.08999 * 109.47323 * 29.98282 * 1 2 3 30 30 H 1.09012 * 109.46929 * 149.98070 * 1 2 3 31 31 H 1.08997 * 109.47210 * 300.00117 * 8 7 6 32 32 H 1.08995 * 109.46992 * 60.00149 * 8 7 6 33 33 H 1.09007 * 109.46676 * 210.00038 * 12 11 9 34 34 H 1.09000 * 109.47141 * 329.99855 * 12 11 9 35 35 H 0.97004 * 119.99763 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.46806 * 209.99772 * 21 11 9 37 37 H 1.08993 * 109.47274 * 329.99892 * 21 11 9 38 38 H 1.08997 * 109.46970 * 300.00090 * 22 21 11 39 39 H 1.09006 * 109.47258 * 59.99602 * 22 21 11 40 40 H 1.09003 * 109.46989 * 299.99814 * 23 22 21 41 41 H 1.08997 * 109.47034 * 59.99475 * 23 22 21 42 42 H 1.09001 * 109.47554 * 59.99263 * 25 24 23 43 43 H 1.08997 * 109.47327 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.46771 * 299.99680 * 25 24 23 45 45 H 1.08998 * 109.47267 * 60.00225 * 26 24 23 46 46 H 1.09002 * 109.46912 * 180.02562 * 26 24 23 47 47 H 1.08997 * 109.47201 * 299.99958 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0641 0.0000 4 7 3.5963 0.6205 -0.0006 5 1 4.3933 1.1734 -0.0011 6 6 3.5472 -0.7293 -0.0015 7 16 4.9324 -1.8183 -0.0019 8 6 4.0778 -3.4139 -0.0024 9 6 5.0931 -4.5275 -0.0034 10 8 6.2779 -4.2680 -0.0034 11 7 4.6846 -5.8119 -0.0044 12 6 3.2535 -6.1253 -0.0051 13 6 2.7633 -6.2319 -1.4261 14 1 3.4490 -6.0808 -2.2466 15 6 1.4393 -6.5223 -1.6786 16 7 0.6042 -6.7058 -0.6794 17 14 0.8315 -6.6536 -3.4401 18 1 1.9596 -6.4042 -4.3729 19 1 0.2857 -8.0145 -3.6752 20 1 -0.2343 -5.6459 -3.6724 21 6 5.6717 -6.8944 -0.0049 22 6 6.0149 -7.2723 1.4374 23 6 7.0453 -8.4033 1.4370 24 7 7.3743 -8.7666 2.8218 25 6 8.1740 -9.9980 2.8672 26 6 8.0651 -7.6648 3.5050 27 7 2.2800 -1.0865 -0.0009 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5142 31 1 3.4533 -3.4918 0.8876 32 1 3.4533 -3.4912 -0.8923 33 1 3.0889 -7.0729 0.5081 34 1 2.7080 -5.3341 0.5091 35 1 -0.3272 -6.9104 -0.8571 36 1 5.2589 -7.7622 -0.5194 37 1 6.5742 -6.5630 -0.5182 38 1 6.4275 -6.4046 1.9520 39 1 5.1122 -7.6038 1.9508 40 1 6.6321 -9.2710 0.9225 41 1 7.9479 -8.0723 0.9234 42 1 9.1019 -9.8493 2.3150 43 1 8.4040 -10.2438 3.9039 44 1 7.6098 -10.8144 2.4164 45 1 7.4218 -6.7850 3.5179 46 1 8.2975 -7.9604 4.5281 47 1 8.9891 -7.4316 2.9759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081292757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:15 Heat of formation + Delta-G solvation = 31.717852 kcal Electronic energy + Delta-G solvation = -27300.668596 eV Core-core repulsion = 23452.868343 eV Total energy + Delta-G solvation = -3847.800253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.05555 -40.89525 -38.63710 -36.93340 -34.77981 -34.36376 -33.34012 -32.85114 -30.79129 -29.31808 -29.24401 -28.47607 -26.91051 -24.92951 -24.42818 -23.66947 -21.78805 -21.64335 -20.47005 -19.60582 -18.59309 -18.10364 -17.73724 -17.14531 -16.97326 -16.54803 -16.50990 -16.23680 -15.95917 -15.60365 -15.26799 -14.82411 -14.63101 -14.50547 -14.39043 -14.00982 -13.80133 -13.49650 -13.37077 -13.29734 -13.23839 -13.18349 -12.91138 -12.86889 -12.66451 -12.55617 -12.40418 -12.34588 -12.04311 -11.83373 -11.66525 -11.48563 -11.44867 -11.25958 -11.06657 -10.97978 -10.56297 -9.55433 -9.30353 -8.93269 -8.18403 -6.32160 -0.21593 0.29323 0.73599 1.41597 1.45104 1.52299 1.56762 1.65621 1.82642 2.22283 2.44401 3.05173 3.13559 3.39027 3.46603 3.58173 3.97338 4.02565 4.13004 4.24092 4.42279 4.44266 4.49279 4.52279 4.63981 4.68014 4.70891 4.72374 4.76118 4.82282 4.82713 4.91934 5.01306 5.02881 5.02984 5.13648 5.21327 5.31757 5.39526 5.63890 5.78859 5.86680 6.05436 6.07032 6.13205 6.45212 6.78881 6.84703 7.11585 7.40130 8.87814 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007955 B = 0.003565 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.860710 B = 7853.112151 C =10561.650096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.222 3.778 3 N -0.325 5.325 4 N -0.456 5.456 5 H 0.457 0.543 6 C 0.244 3.756 7 S 0.097 5.903 8 C -0.125 4.125 9 C 0.533 3.467 10 O -0.574 6.574 11 N -0.585 5.585 12 C 0.251 3.749 13 C -0.546 4.546 14 H 0.054 0.946 15 C 0.028 3.972 16 N -0.915 5.915 17 Si 0.950 3.050 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.281 1.281 21 C 0.122 3.878 22 C -0.115 4.115 23 C 0.065 3.935 24 N -0.565 5.565 25 C 0.025 3.975 26 C 0.023 3.977 27 N -0.564 5.564 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.027 0.973 34 H 0.030 0.970 35 H 0.267 0.733 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.783 4.805 4.770 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.062 4.062 3 N -0.157 5.157 4 N -0.178 5.178 5 H 0.306 0.694 6 C -0.142 4.142 7 S 0.323 5.677 8 C -0.276 4.276 9 C 0.320 3.680 10 O -0.457 6.457 11 N -0.314 5.314 12 C 0.130 3.870 13 C -0.585 4.585 14 H 0.073 0.927 15 C -0.173 4.173 16 N -0.554 5.554 17 Si 0.776 3.224 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.206 1.206 21 C -0.001 4.001 22 C -0.154 4.154 23 C -0.063 4.063 24 N -0.289 5.289 25 C -0.123 4.123 26 C -0.125 4.125 27 N -0.298 5.298 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 9.448 5.389 5.066 11.999 hybrid contribution -0.689 -0.061 -1.291 1.465 sum 8.759 5.328 3.775 10.925 Atomic orbital electron populations 1.20285 0.81501 1.04958 1.05052 1.25048 0.99888 0.84992 0.96251 1.77777 0.86907 1.22427 1.28598 1.47733 1.08152 1.04119 1.57817 0.69371 1.26862 0.99089 0.88590 0.99682 1.85849 0.96226 0.94064 1.91529 1.23604 1.01444 0.92907 1.09651 1.19633 0.88057 0.84068 0.76278 1.90627 1.17755 1.83730 1.53566 1.48070 1.09247 1.04591 1.69489 1.19170 0.74601 0.96779 0.96433 1.21646 0.94657 1.49338 0.92844 0.92733 1.25553 0.96783 0.94450 1.00552 1.70007 1.04952 1.48041 1.32404 0.85623 0.78316 0.77821 0.80633 1.19557 1.20317 1.20640 1.21389 0.91900 0.89679 0.97174 1.21768 0.99353 0.98130 0.96138 1.21968 0.97266 0.98057 0.89025 1.61960 1.45681 1.05322 1.15943 1.22423 0.95629 0.91534 1.02693 1.22426 0.96610 0.94137 0.99328 1.71081 0.99381 1.32002 1.27341 0.88230 0.88033 0.89662 0.86034 0.86135 0.95454 0.95187 0.92344 0.89976 0.90801 0.92710 0.92128 0.89907 0.94387 0.95255 0.90327 0.90920 0.92221 0.90169 0.95447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.32 10.51 71.24 0.75 -0.57 16 2 C 0.22 6.82 8.13 138.64 1.13 7.95 16 3 N -0.33 -9.55 12.78 -51.34 -0.66 -10.20 16 4 N -0.46 -11.95 7.47 -57.58 -0.43 -12.38 16 5 H 0.46 8.44 8.96 -213.12 -1.91 6.53 16 6 C 0.24 7.54 8.31 179.91 1.50 9.03 16 7 S 0.10 2.94 21.45 -56.49 -1.21 1.73 16 8 C -0.12 -4.53 4.25 71.24 0.30 -4.23 16 9 C 0.53 20.85 7.69 87.66 0.67 21.53 16 10 O -0.57 -23.38 15.44 -3.05 -0.05 -23.43 16 11 N -0.58 -23.25 2.46 -826.15 -2.03 -25.28 16 12 C 0.25 11.50 4.97 85.63 0.43 11.92 16 13 C -0.55 -27.47 9.28 25.60 0.24 -27.23 16 14 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 15 C 0.03 1.42 5.46 84.65 0.46 1.89 16 16 N -0.92 -49.53 13.29 21.45 0.28 -49.25 16 17 Si 0.95 41.35 29.54 68.60 2.03 43.38 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 C 0.12 4.16 5.41 86.38 0.47 4.63 16 22 C -0.11 -3.48 5.46 30.60 0.17 -3.31 16 23 C 0.07 1.64 4.96 86.30 0.43 2.07 16 24 N -0.56 -13.40 5.02 -948.83 -4.76 -18.17 16 25 C 0.02 0.45 9.57 127.69 1.22 1.68 16 26 C 0.02 0.50 9.32 127.69 1.19 1.69 16 27 N -0.56 -19.73 10.58 -188.25 -1.99 -21.72 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.12 4.44 7.40 -2.40 -0.02 4.43 16 32 H 0.12 4.85 8.00 -2.40 -0.02 4.83 16 33 H 0.03 1.33 8.07 -2.38 -0.02 1.31 16 34 H 0.03 1.45 6.44 -2.39 -0.02 1.43 16 35 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 36 H 0.08 2.78 8.07 -2.39 -0.02 2.76 16 37 H 0.07 2.51 7.42 -2.39 -0.02 2.49 16 38 H 0.05 1.76 6.55 -2.39 -0.02 1.74 16 39 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.08 1.96 8.06 -2.39 -0.02 1.94 16 41 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 42 H 0.03 0.49 8.14 -2.39 -0.02 0.48 16 43 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 44 H 0.07 1.25 8.12 -2.38 -0.02 1.23 16 45 H 0.06 1.44 6.47 -2.39 -0.02 1.42 16 46 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 47 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -62.87 405.56 -0.80 -63.68 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.94 Total: 24.61 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 8.95 Total: 27.03 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -9.58 Total: -136.99 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.21 Total: 1.73 kcal Total: -62.87 -0.80 -63.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081292757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.395 kcal (2) G-P(sol) polarization free energy of solvation -62.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds