Wall clock time and date at job start Sat Apr 11 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00271 * 2 1 4 4 O 1.21278 * 119.99854 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00161 * 180.02562 * 3 2 1 6 6 N 1.46899 * 109.47107 * 180.02562 * 5 3 2 7 7 C 1.49041 * 110.99844 * 54.43754 * 6 5 3 8 8 C 1.54949 * 106.85203 * 145.37900 * 7 6 5 9 9 C 1.53044 * 104.02942 * 2.29285 * 8 7 6 10 10 H 1.08994 * 110.51860 * 90.00281 * 9 8 7 11 11 C 1.52082 * 116.26433 * 216.96321 * 9 8 7 12 12 N 1.47758 * 106.33293 * 172.41201 * 11 9 8 13 13 C 1.34777 * 119.69588 * 128.27973 * 12 11 9 14 14 O 1.21282 * 120.00439 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99705 * 180.02562 * 13 12 11 16 16 S 1.80996 * 109.47152 * 179.97438 * 15 13 12 17 17 C 1.76205 * 100.00217 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99552 * 0.02562 * 17 16 15 19 19 C 1.38792 * 120.00103 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00073 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00126 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46792 * 90.00375 * 21 19 17 23 23 H 1.48496 * 109.46796 * 209.99970 * 21 19 17 24 24 H 1.48495 * 109.46976 * 330.00064 * 21 19 17 25 25 C 1.46593 * 120.60125 * 308.26076 * 12 11 9 26 26 C 1.52047 * 110.76398 * 47.28199 * 25 12 11 27 27 C 1.46718 * 111.00198 * 169.99854 * 6 5 3 28 28 H 1.09003 * 109.91389 * 313.96902 * 27 6 5 29 29 H 1.09004 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47021 * 299.99722 * 1 2 3 31 31 H 1.09001 * 109.47001 * 59.99554 * 1 2 3 32 32 H 0.97005 * 120.00266 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47152 * 60.00245 * 5 3 2 34 34 H 1.09001 * 109.46980 * 300.00345 * 5 3 2 35 35 H 1.08995 * 109.98588 * 264.72911 * 7 6 5 36 36 H 1.09007 * 109.98327 * 26.03230 * 7 6 5 37 37 H 1.08998 * 110.52081 * 243.65540 * 8 7 6 38 38 H 1.09000 * 110.63331 * 120.98336 * 8 7 6 39 39 H 1.09001 * 110.07934 * 291.61534 * 11 9 8 40 40 H 1.09001 * 110.07653 * 53.09728 * 11 9 8 41 41 H 1.08997 * 109.47426 * 300.00036 * 15 13 12 42 42 H 1.09004 * 109.47196 * 60.00113 * 15 13 12 43 43 H 0.97005 * 120.00090 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.23764 * 168.00953 * 25 12 11 45 45 H 1.08998 * 109.23843 * 287.44553 * 25 12 11 46 46 H 1.08994 * 110.01313 * 189.19122 * 26 25 12 47 47 H 1.08997 * 108.78822 * 68.70414 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 7 4.1356 2.5521 0.0002 7 6 3.5511 3.3246 1.1328 8 6 4.6408 4.3183 1.6085 9 6 5.8053 4.0815 0.6440 10 1 5.7207 4.7345 -0.2246 11 6 7.2015 4.1678 1.2407 12 7 8.1336 3.7264 0.1826 13 6 9.1879 4.5000 -0.1437 14 8 9.3684 5.5529 0.4306 15 6 10.1425 4.0567 -1.2223 16 16 11.4416 5.3003 -1.4266 17 6 12.3872 4.5473 -2.7087 18 1 12.0835 3.5937 -3.1146 19 6 13.5221 5.1796 -3.1968 20 7 14.2282 4.6173 -4.1548 21 14 14.0469 6.8295 -2.4951 22 1 14.9649 6.6103 -1.3485 23 1 14.7448 7.6143 -3.5449 24 1 12.8483 7.5751 -2.0342 25 6 7.9222 2.4546 -0.5152 26 6 6.4740 2.3165 -0.9572 27 6 5.5827 2.5981 0.2375 28 1 5.8438 1.9419 1.0678 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9500 -0.8401 -0.0004 33 1 4.0089 0.6535 -0.8909 34 1 4.0096 0.6530 0.8891 35 1 2.6703 3.8710 0.7958 36 1 3.2827 2.6492 1.9452 37 1 4.9411 4.0948 2.6321 38 1 4.2839 5.3454 1.5317 39 1 7.4224 5.1955 1.5290 40 1 7.2791 3.5116 2.1076 41 1 10.5917 3.1043 -0.9409 42 1 9.6010 3.9398 -2.1611 43 1 15.0217 5.0591 -4.4957 44 1 8.5750 2.4105 -1.3869 45 1 8.1645 1.6316 0.1571 46 1 6.2913 1.3075 -1.3266 47 1 6.2769 3.0425 -1.7460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732599679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:14 Heat of formation + Delta-G solvation = -79.721797 kcal Electronic energy + Delta-G solvation = -27606.644454 eV Core-core repulsion = 23721.719065 eV Total energy + Delta-G solvation = -3884.925390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.84942 -40.79401 -39.68273 -37.01141 -35.55868 -34.66256 -34.10148 -32.72076 -31.48227 -29.52952 -28.86143 -27.84255 -26.40073 -24.97534 -23.92724 -22.13578 -21.58693 -21.16457 -20.55958 -19.49782 -18.18163 -18.01984 -17.40135 -17.15175 -16.85221 -16.78167 -16.60422 -16.14685 -15.98075 -15.68683 -15.37168 -15.18888 -14.91126 -14.67056 -14.38071 -14.28023 -13.95564 -13.88736 -13.70165 -13.35652 -13.33546 -13.17856 -13.06528 -13.00900 -12.69198 -12.52409 -12.38525 -12.18639 -12.01289 -11.85645 -11.63487 -11.18950 -11.16314 -10.91641 -10.76455 -10.50010 -10.11413 -9.75499 -9.41034 -8.99273 -8.50674 -6.21348 0.98405 1.31426 1.46473 1.52408 1.54725 1.64303 2.04012 2.18725 2.25646 2.69234 2.87567 2.89487 3.37822 3.60874 3.67430 3.80502 3.90814 4.06615 4.13946 4.20400 4.21163 4.28484 4.35152 4.41608 4.42372 4.46989 4.50455 4.51710 4.62421 4.69691 4.72224 4.78780 4.86018 4.93685 4.95457 5.05049 5.12792 5.26884 5.31851 5.48431 5.54038 5.71858 5.82367 5.99853 6.12385 6.23071 6.59537 6.94803 7.08393 7.30515 8.61452 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.002094 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.902321 B =13366.233059 C =14058.577479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.725 5.725 3 C 0.504 3.496 4 O -0.571 6.571 5 C 0.027 3.973 6 N -0.510 5.510 7 C 0.054 3.946 8 C -0.119 4.119 9 C -0.102 4.102 10 H 0.063 0.937 11 C 0.128 3.872 12 N -0.606 5.606 13 C 0.532 3.468 14 O -0.565 6.565 15 C -0.106 4.106 16 S -0.181 6.181 17 C -0.526 4.526 18 H 0.065 0.935 19 C 0.047 3.953 20 N -0.915 5.915 21 Si 0.912 3.088 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.239 1.239 25 C 0.103 3.897 26 C -0.111 4.111 27 C 0.070 3.930 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.419 0.581 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.277 0.723 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.108 0.892 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.138 -15.711 12.397 33.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.379 5.379 3 C 0.291 3.709 4 O -0.449 6.449 5 C -0.104 4.104 6 N -0.234 5.234 7 C -0.073 4.073 8 C -0.157 4.157 9 C -0.122 4.122 10 H 0.082 0.918 11 C 0.006 3.994 12 N -0.340 5.340 13 C 0.319 3.681 14 O -0.443 6.443 15 C -0.256 4.256 16 S 0.046 5.954 17 C -0.674 4.674 18 H 0.083 0.917 19 C -0.159 4.159 20 N -0.553 5.553 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.184 1.184 24 H -0.163 1.163 25 C -0.020 4.020 26 C -0.150 4.150 27 C -0.038 4.038 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.256 0.744 33 H 0.145 0.855 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.126 0.874 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.354 -13.246 12.594 32.899 hybrid contribution 0.663 -1.179 -0.267 1.379 sum -26.691 -14.425 12.327 32.748 Atomic orbital electron populations 1.21605 0.79132 1.04023 1.01088 1.45732 1.08208 1.08743 1.75190 1.21007 0.90887 0.83736 0.75287 1.90708 1.71169 1.32763 1.50290 1.22343 0.90776 0.91752 1.05542 1.64523 1.04468 1.11079 1.43328 1.23099 0.97360 0.95768 0.91065 1.22235 0.94012 1.00162 0.99322 1.22099 0.93455 0.97372 0.99281 0.91825 1.21542 0.86671 1.01629 0.89558 1.48251 1.25455 1.21903 1.38347 1.20079 0.81670 0.83503 0.82818 1.90672 1.74311 1.24692 1.54648 1.23300 0.98093 1.03072 1.01167 1.84767 1.29821 1.31312 1.49495 1.22438 1.13444 1.09220 1.22270 0.91725 1.25528 0.95101 1.01019 0.94249 1.70010 1.17457 1.40558 1.27308 0.85893 0.80845 0.80451 0.79345 1.18660 1.18379 1.16298 1.21690 0.97751 0.84381 0.98154 1.21329 0.92249 1.04082 0.97299 1.22404 0.87513 0.96127 0.97796 0.90921 0.87243 0.93442 0.93692 0.74406 0.85463 0.89078 0.91125 0.93454 0.89484 0.91069 0.90754 0.88894 0.86722 0.87113 0.91393 0.89045 0.88823 0.87421 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.70 127.77 1.37 2.01 16 2 N -0.73 -5.61 5.71 -484.52 -2.77 -8.37 16 3 C 0.50 7.48 7.44 87.66 0.65 8.14 16 4 O -0.57 -14.09 13.94 -3.02 -0.04 -14.13 16 5 C 0.03 0.27 5.42 85.56 0.46 0.73 16 6 N -0.51 -8.43 5.15 -863.77 -4.45 -12.88 16 7 C 0.05 0.98 5.15 86.55 0.45 1.42 16 8 C -0.12 -1.96 6.63 31.28 0.21 -1.75 16 9 C -0.10 -1.95 2.73 -10.25 -0.03 -1.97 16 10 H 0.06 1.58 8.05 -2.39 -0.02 1.56 16 11 C 0.13 2.75 6.01 85.84 0.52 3.26 16 12 N -0.61 -15.07 3.00 -821.91 -2.47 -17.54 16 13 C 0.53 18.81 7.69 87.66 0.67 19.48 16 14 O -0.56 -24.71 15.22 -3.04 -0.05 -24.75 16 15 C -0.11 -4.00 4.49 71.24 0.32 -3.68 16 16 S -0.18 -9.20 18.55 -56.49 -1.05 -10.25 16 17 C -0.53 -30.54 10.04 67.95 0.68 -29.86 16 18 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 19 C 0.05 2.73 5.50 84.86 0.47 3.20 16 20 N -0.92 -55.54 13.97 21.65 0.30 -55.24 16 21 Si 0.91 45.25 27.74 68.60 1.90 47.15 16 22 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 25 C 0.10 1.74 6.18 86.05 0.53 2.27 16 26 C -0.11 -1.58 5.87 29.85 0.18 -1.41 16 27 C 0.07 1.01 1.65 45.35 0.07 1.09 16 28 H 0.07 0.80 7.80 -2.39 -0.02 0.78 16 29 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.42 0.18 8.83 -92.70 -0.82 -0.64 16 33 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.48 7.89 -2.39 -0.02 0.46 16 35 H 0.07 1.68 6.84 -2.39 -0.02 1.66 16 36 H 0.05 0.75 7.65 -2.38 -0.02 0.74 16 37 H 0.09 1.13 8.06 -2.39 -0.02 1.11 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.99 7.00 -2.39 -0.02 1.98 16 40 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 41 H 0.11 3.92 7.99 -2.40 -0.02 3.90 16 42 H 0.11 3.90 7.55 -2.39 -0.02 3.88 16 43 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 44 H 0.09 1.66 5.84 -2.39 -0.01 1.64 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 46 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.06 1.13 8.06 -2.39 -0.02 1.11 16 Total: -1.00 -82.31 382.75 -1.95 -84.26 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.12 Total: 8.82 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 6.55 Total: 2.93 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -9.38 Total: -94.03 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.09 Total: -38.88 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.05 Total: -10.25 kcal Total: -82.31 -1.95 -84.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732599679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.542 kcal (2) G-P(sol) polarization free energy of solvation -82.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds