Wall clock time and date at job start Sat Apr 11 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46765 * 124.34406 * 2 1 4 4 C 1.54481 * 105.47148 * 162.98461 * 3 2 1 5 5 C 1.54627 * 101.76449 * 25.41076 * 4 3 2 6 6 H 1.09003 * 110.48853 * 216.39107 * 5 4 3 7 7 N 1.46900 * 110.48696 * 93.88498 * 5 4 3 8 8 C 1.48566 * 110.99679 * 289.28655 * 7 5 4 9 9 C 1.54390 * 104.59328 * 200.95971 * 8 7 5 10 10 C 1.54257 * 105.06073 * 23.85144 * 9 8 7 11 11 C 1.48564 * 111.00295 * 173.86880 * 7 5 4 12 12 H 1.08997 * 110.40873 * 40.25669 * 11 7 5 13 13 C 1.53001 * 110.40916 * 277.81695 * 11 7 5 14 14 N 1.46495 * 109.47027 * 174.86507 * 13 11 7 15 15 C 1.34773 * 120.00412 * 184.77151 * 14 13 11 16 16 O 1.21290 * 119.99748 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00486 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47070 * 179.97438 * 17 15 14 19 19 C 1.76206 * 99.99893 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99804 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99939 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99961 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47355 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47204 * 120.00284 * 23 21 19 26 26 H 1.48505 * 109.46903 * 239.99956 * 23 21 19 27 27 C 1.34413 * 124.35309 * 179.97438 * 2 1 3 28 28 O 1.21289 * 124.94121 * 0.44153 * 27 2 1 29 29 H 1.09005 * 109.46746 * 90.00611 * 1 2 3 30 30 H 1.09000 * 109.46714 * 209.99777 * 1 2 3 31 31 H 1.08997 * 109.46960 * 330.00394 * 1 2 3 32 32 H 1.08994 * 110.24872 * 43.97859 * 3 2 1 33 33 H 1.09006 * 110.24267 * 281.97690 * 3 2 1 34 34 H 1.08994 * 110.96783 * 267.29381 * 4 3 2 35 35 H 1.08998 * 110.96981 * 143.53265 * 4 3 2 36 36 H 1.09001 * 110.41080 * 319.73651 * 8 7 5 37 37 H 1.08995 * 110.41057 * 82.18098 * 8 7 5 38 38 H 1.09004 * 110.31837 * 264.95829 * 9 8 7 39 39 H 1.08992 * 110.40870 * 142.79447 * 9 8 7 40 40 H 1.08998 * 110.32404 * 241.10472 * 10 9 8 41 41 H 1.09001 * 110.41128 * 118.93766 * 10 9 8 42 42 H 1.09004 * 109.47207 * 294.86368 * 13 11 7 43 43 H 1.09003 * 109.47055 * 54.86321 * 13 11 7 44 44 H 0.96999 * 120.00246 * 4.77330 * 14 13 11 45 45 H 1.08995 * 109.47139 * 300.00100 * 17 15 14 46 46 H 1.08996 * 109.46904 * 60.00081 * 17 15 14 47 47 H 0.96998 * 119.99995 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7489 0.4357 5 6 3.6898 -0.7377 0.0102 6 1 4.2347 -1.3454 0.7326 7 7 4.2689 -0.8930 -1.3309 8 6 3.3639 -0.3364 -2.3693 9 6 3.8041 -1.0253 -3.6789 10 6 4.4853 -2.3356 -3.2331 11 6 4.3993 -2.3282 -1.6917 12 1 3.5242 -2.8853 -1.3570 13 6 5.6733 -2.9177 -1.0833 14 7 5.7195 -4.3579 -1.3474 15 6 6.7076 -5.1083 -0.8212 16 8 7.5590 -4.5911 -0.1293 17 6 6.7554 -6.5897 -1.0934 18 16 8.1885 -7.3111 -0.2557 19 6 8.0030 -8.9980 -0.7298 20 1 7.1770 -9.2942 -1.3594 21 6 8.9184 -9.9461 -0.2941 22 7 9.9247 -9.5852 0.4736 23 14 8.7220 -11.7342 -0.7974 24 1 7.5192 -11.8776 -1.6565 25 1 9.9239 -12.1708 -1.5525 26 1 8.5672 -12.5759 0.4163 27 6 2.2236 -1.1097 0.0005 28 8 1.7947 -2.2442 -0.0067 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.8983 1.9384 0.7101 33 1 2.3306 1.6429 -1.0005 34 1 3.8269 0.8450 1.5141 35 1 4.4753 1.3012 -0.0967 36 1 2.3267 -0.5817 -2.1407 37 1 3.4920 0.7433 -2.4461 38 1 4.5114 -0.3956 -4.2186 39 1 2.9380 -1.2425 -4.3039 40 1 5.5268 -2.3491 -3.5541 41 1 3.9539 -3.1971 -3.6377 42 1 6.5446 -2.4384 -1.5297 43 1 5.6754 -2.7455 -0.0070 44 1 5.0389 -4.7716 -1.9011 45 1 5.8436 -7.0571 -0.7218 46 1 6.8392 -6.7594 -2.1669 47 1 10.5646 -10.2476 0.7778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753097770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:20 Heat of formation + Delta-G solvation = -53.695449 kcal Electronic energy + Delta-G solvation = -27717.977321 eV Core-core repulsion = 23834.180519 eV Total energy + Delta-G solvation = -3883.796803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63250 -39.28106 -38.31491 -36.85422 -34.48339 -33.59452 -32.38791 -30.90492 -30.37773 -28.60895 -27.47317 -26.72963 -25.49952 -24.72609 -22.42347 -21.59488 -20.74221 -20.23974 -19.50917 -17.86453 -17.55811 -17.06408 -16.56726 -16.18915 -15.87566 -15.38277 -15.19084 -15.00652 -14.76758 -14.42856 -14.32484 -13.98659 -13.84341 -13.62815 -13.47408 -13.05447 -12.99690 -12.86031 -12.63499 -12.60175 -12.47433 -12.31595 -11.73975 -11.67375 -11.49508 -11.42714 -11.06217 -11.02621 -10.97468 -10.82929 -10.71545 -10.62355 -9.76221 -9.33878 -9.20359 -9.03716 -8.84359 -8.78532 -8.17804 -6.44810 -6.17736 -3.87537 2.07813 2.52670 3.00017 3.18787 3.24636 3.27922 3.33616 3.49621 3.83491 3.94822 3.96593 4.21657 4.24441 4.31508 4.42133 4.58919 4.66108 4.77397 4.80721 4.90729 4.94125 5.04445 5.11475 5.17421 5.18176 5.22005 5.24143 5.33866 5.36342 5.45573 5.48260 5.57957 5.67800 5.74031 5.77064 5.89994 5.93932 5.97513 6.00417 6.20966 6.35737 6.43943 6.59528 6.73213 7.64158 7.70897 7.78996 8.39779 8.69807 9.27734 10.89788 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.002065 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.363676 B =13557.769417 C =13702.327086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.624 5.624 3 C 0.098 3.902 4 C -0.124 4.124 5 C 0.038 3.962 6 H 0.121 0.879 7 N -0.472 5.472 8 C 0.025 3.975 9 C -0.123 4.123 10 C -0.121 4.121 11 C 0.040 3.960 12 H 0.079 0.921 13 C 0.140 3.860 14 N -0.737 5.737 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.491 3.509 28 O -0.521 6.521 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.397 0.603 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.614 26.457 -5.886 33.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.360 5.360 3 C -0.025 4.025 4 C -0.162 4.162 5 C -0.075 4.075 6 H 0.138 0.862 7 N -0.196 5.196 8 C -0.103 4.103 9 C -0.161 4.161 10 C -0.160 4.160 11 C -0.068 4.068 12 H 0.097 0.903 13 C 0.016 3.984 14 N -0.392 5.392 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.277 3.723 28 O -0.396 6.396 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.231 0.769 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.830 26.948 -4.603 32.638 hybrid contribution -2.430 -2.214 -1.296 3.534 sum -20.260 24.733 -5.899 32.511 Atomic orbital electron populations 1.21556 0.78102 1.03226 1.01872 1.48314 1.06530 1.07564 1.73566 1.22243 0.90887 0.87268 1.02111 1.22673 0.96541 0.94203 1.02819 1.22826 0.91046 0.99102 0.94494 0.86158 1.65550 1.41498 1.12946 0.99652 1.23325 0.94853 1.00377 0.91739 1.22278 1.00571 0.96701 0.96519 1.22396 1.02267 0.97709 0.93583 1.23043 0.98837 0.89070 0.95855 0.90300 1.21033 0.96366 0.80500 1.00535 1.45902 1.30382 1.08153 1.54726 1.20266 0.80474 0.88513 0.78844 1.90702 1.37821 1.73707 1.36956 1.23525 1.07294 0.93941 1.05590 1.85385 1.27777 1.04948 1.65292 1.22916 1.15253 0.93032 1.36983 0.90893 1.24996 0.94519 0.99450 0.94708 1.70029 1.13149 1.34561 1.32582 0.86116 0.78202 0.82774 0.78392 1.19633 1.20594 1.20590 1.21810 0.90381 0.84619 0.75531 1.90752 1.78733 1.20990 1.49118 0.92645 0.90665 0.90927 0.90122 0.90849 0.89115 0.87667 0.93344 0.89488 0.90588 0.91296 0.90113 0.90934 0.90897 0.91549 0.76945 0.89240 0.89229 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.96 59.85 0.66 1.20 16 2 N -0.62 -4.55 2.79 -180.28 -0.50 -5.06 16 3 C 0.10 0.42 6.52 -3.12 -0.02 0.40 16 4 C -0.12 -0.64 6.64 -25.10 -0.17 -0.80 16 5 C 0.04 0.33 3.09 -67.73 -0.21 0.12 16 6 H 0.12 1.18 7.19 -51.93 -0.37 0.81 16 7 N -0.47 -4.18 5.04 -214.24 -1.08 -5.26 16 8 C 0.02 0.18 4.82 -2.17 -0.01 0.17 16 9 C -0.12 -0.88 7.00 -25.34 -0.18 -1.06 16 10 C -0.12 -1.06 6.33 -25.35 -0.16 -1.22 16 11 C 0.04 0.42 2.21 -66.07 -0.15 0.27 16 12 H 0.08 0.98 6.23 -51.93 -0.32 0.66 16 13 C 0.14 1.82 5.27 -4.04 -0.02 1.80 16 14 N -0.74 -10.68 5.45 -60.29 -0.33 -11.01 16 15 C 0.53 10.43 7.85 -10.99 -0.09 10.34 16 16 O -0.52 -12.18 15.86 5.55 0.09 -12.09 16 17 C -0.15 -3.20 6.16 36.00 0.22 -2.98 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 20 H 0.07 2.01 7.80 -52.49 -0.41 1.61 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 23 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 C 0.49 5.16 5.23 -10.87 -0.06 5.10 16 28 O -0.52 -7.69 16.17 5.55 0.09 -7.60 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.54 7.93 -51.93 -0.41 0.13 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.25 6.79 -51.93 -0.35 -0.10 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.05 0.42 5.71 -51.93 -0.30 0.12 16 37 H 0.09 0.49 7.18 -51.93 -0.37 0.12 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.74 7.74 -51.93 -0.40 0.34 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.99 7.97 -51.93 -0.41 0.58 16 43 H 0.07 0.95 7.23 -51.93 -0.38 0.58 16 44 H 0.40 4.73 8.37 -40.82 -0.34 4.39 16 45 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 46 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 386.85 15.07 5.83 5.83 Total: -1.00 -37.46 386.85 -9.82 -47.28 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.43 Total: 0.72 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 0.02 Total: 0.15 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -1.18 Total: -47.15 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.18 Total: -19.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.46 -9.82 -47.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753097770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.419 kcal (2) G-P(sol) polarization free energy of solvation -37.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds